cluster # 2214

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Oryza sativa
cluster # 2214 cluster # 2214 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2214#0 length = 925 sequences # 1

consensus_2214#1 length = 868 sequences # 1

consensusID : consensus_2214#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 925
fasta sequence

                              [GAATTCGGCACGAGTCCAGCAGCCACAACATCCCCTAATTCATTCAATACATCTGTGACCCGAAGTTTTCCATCAGCTTTGGGTTCACAAATATTTCCTCTTCTCTTTTCATCTTAATCCCATCCGTCTGATATTATTCTGTTCGCAATCCCGATAGCTCCGCGACAAAGCCGCCCATCATGAAGGGAGCTATGATGACAGCAGCTGTGCTGCTTGGCACCGCCGAGGCCGGTGTCCACAAGCTCAAGATGAAGAAGATTCCCTTGGAGGACCAGCTTAAAACCTTCGACCTCAATGCACAGATGCGAGGTCTCGGCCAGAAGTACCTCGGCATCCGCCCTGAATCGCACCAGCAGGCTGTCTTCAGCAATGATGCCGTTCAGGCCAGCGGGAACCACCCTGTGCCGATCAGCAACTTCATGAACGCGCAGTACTTCTCTCAGATCACCATCGGCACTCCTCCCCAGAATTTCAAGGTCATCCTCGACACTGGAAGCTCTAAACCTCTGGTCCCTCATCGTCTNGCGGTCTATNCGCTGTATCTCACAACAAGTACGATCGCTTCTCATCACTACAAGAAAACNGGACGAGTTAGATCATATGGTCNGCGCATGGAGGTGTCTTCNACATGTTTACCATCGAGACTCAGATCAGAACTTGCTTCTCGAACTCTAAAGACCTGGTGCTTTGCTTTGCGATTACGAAACCCGATGTGTAAAGCTGCGGAAAAATGCCCTCTATCCTGGACAAACTATTAAACTGTTCCTTCTCTTAAAAAAAACAGGAGTTTGGTTGGCCNCCGAAACAAACCCCCACGCGTGTGGGTTTGTGTGTTTTCTTAAATGATACNCCTTCTCTTCACTTCTTCTANTCTTTTNTCTTCTGGAAGGAAGAAGAGATGATGAACATGCACTCCGATATGTTG]

[+] EMBL AW155193             [GAATTCGGCACGAGTCCAGCAGCCACAACATCCCCTAATTCATTCAATACATCTGTGACCCGAAGTTTTCCATCAGCTTTGGGTTCACAAATATTTCCTCTTCTCTTTTCATCTTAATCCCATCCGTCTGATATTATTCTGTTCGCAATCCCGATAGCTCCGCGACAAAGCCGCCCATCATGAAGGGAGCTATGATGACAGCAGCTGTGCTGCTTGGCACCGCCGAGGCCGGTGTCCACAAGCTCAAGATGAAGAAGATTCCCTTGGAGGACCAGCTTAAAACCTTCGACCTCAATGCACAGATGCGAGGTCTCGGCCAGAAGTACCTCGGCATCCGCCCTGAATCGCACCAGCAGGCTGTCTTCAGCAATGATGCCGTTCAGGCCAGCGGGAACCACCCTGTGCCGATCAGCAACTTCATGAACGCGCAGTACTTCTCTCAGATCACCATCGGCACTCCTCCCCAGAATTTCAAGGTCATCCTCGACACTGGAAGCTCTAAACCTCTGGTCCCTCATCGTCTNGCGGTCTATNCGCTGTATCTCACAACAAGTACGATCGCTTCTCATCACTACAAGAAAACNGGACGAGTTAGATCATATGGTCNGCGCATGGAGGTGTCTTCNACATGTTTACCATCGAGACTCAGATCAGAACTTGCTTCTCGAACTCTAAAGACCTGGTGCTTTGCTTTGCGATTACGAAACCCGATGTGTAAAGCTGCGGAAAAATGCCCTCTATCCTGGACAAACTATTAAACTGTTCCTTCTCTTAAAAAAAACAGGAGTTTGGTTGGCCNCCGAAACAAACCCCCACGCGTGTGGGTTTGTGTGTTTTCTTAAATGATACNCCTTCTCTTCACTTCTTCTANTCTTTTNTCTTCTGGAAGGAAGAAGAGATGATGAACATGCACTCCGATATGTTG]




>consensus_2214#0
GAATTCGGCACGAGTCCAGCAGCCACAACATCCCCTAATTCATTCAATACATCTGTGACC
CGAAGTTTTCCATCAGCTTTGGGTTCACAAATATTTCCTCTTCTCTTTTCATCTTAATCC
CATCCGTCTGATATTATTCTGTTCGCAATCCCGATAGCTCCGCGACAAAGCCGCCCATCA
TGAAGGGAGCTATGATGACAGCAGCTGTGCTGCTTGGCACCGCCGAGGCCGGTGTCCACA
AGCTCAAGATGAAGAAGATTCCCTTGGAGGACCAGCTTAAAACCTTCGACCTCAATGCAC
AGATGCGAGGTCTCGGCCAGAAGTACCTCGGCATCCGCCCTGAATCGCACCAGCAGGCTG
TCTTCAGCAATGATGCCGTTCAGGCCAGCGGGAACCACCCTGTGCCGATCAGCAACTTCA
TGAACGCGCAGTACTTCTCTCAGATCACCATCGGCACTCCTCCCCAGAATTTCAAGGTCA
TCCTCGACACTGGAAGCTCTAAACCTCTGGTCCCTCATCGTCTNGCGGTCTATNCGCTGT
ATCTCACAACAAGTACGATCGCTTCTCATCACTACAAGAAAACNGGACGAGTTAGATCAT
ATGGTCNGCGCATGGAGGTGTCTTCNACATGTTTACCATCGAGACTCAGATCAGAACTTG
CTTCTCGAACTCTAAAGACCTGGTGCTTTGCTTTGCGATTACGAAACCCGATGTGTAAAG
CTGCGGAAAAATGCCCTCTATCCTGGACAAACTATTAAACTGTTCCTTCTCTTAAAAAAA
ACAGGAGTTTGGTTGGCCNCCGAAACAAACCCCCACGCGTGTGGGTTTGTGTGTTTTCTT
AAATGATACNCCTTCTCTTCACTTCTTCTANTCTTTTNTCTTCTGGAAGGAAGAAGAGAT
GATGAACATGCACTCCGATATGTTG

consensusID : consensus_2214#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 868
fasta sequence

                              [CAGCAGCCACAACATCCCCTAATTCATTCAATACATCTGTGACCCGAAGTTTTCCATCAGCTTTGGGTTCACAAATATTTCCTCTTCTCTTTTCATCTTAATCCCATCCGTCTGATATTATTCTGTTCGCAATCCCGATAGCTCCGCGACAAAGCCGCCCATCATGAAGGGAGCTATGATGACAGCAGCTGTGCTGCTTGGCACCGCCGAGGCCGGTGTCCACAAGCTCAAGATGAAGAAGATTCCCTTGGAGGACCAGCTTAAAACCTTCGACCTCAATGCACAGATGCGAGGTCTCGGCCAGAAGTACCTCGGCATCCGCCCTGAATCGCACCAGCATGCTGTCTTCAGCAATGATGCCGTTCAGGCCAGCGGGAACCACCCTGTGCCGATCAGCAACTTCATGAACGCGCAGTACTTCTCCGAGATCACCATCAGCACTCCTGCTCAGAATTTCAGGGCATCCTCGACACTGGAAGCTCTACGCTCTGGGTCCCTCATCGTCTTGGGGTCTATGGTAGTAATCTCACAACAAGTCGAATCGTCTGCTTATTGACTACATAAGAACGGACCGATTTAGAACCATTAGCTCCGCGCTTGAGGGTTGTTTCCACAGGTTTGACTTCGGAACTTGGACATACCTGGATGTCCAACTCTATGACCTGGTTGCTATGCTTTGCCATTAACGAATCTCGATGGTTTAAGGCTGTCGAATAAATGTCCGCCTTCCCTGGTGCCAACTATGTACACTGGACTTTACTCTGTGAAGATATCGGTTTATGGGTTATACTACTTAGAAACTTCTCTGTGGCGTTTAGGGCGATTTGTTGTGGGATGTTCCATAGAACTCTTGTTCGCTCTATGTTAG]

[+] EMBL AW155261             [CAGCAGCCACAACATCCCCTAATTCATTCAATACATCTGTGACCCGAAGTTTTCCATCAGCTTTGGGTTCACAAATATTTCCTCTTCTCTTTTCATCTTAATCCCATCCGTCTGATATTATTCTGTTCGCAATCCCGATAGCTCCGCGACAAAGCCGCCCATCATGAAGGGAGCTATGATGACAGCAGCTGTGCTGCTTGGCACCGCCGAGGCCGGTGTCCACAAGCTCAAGATGAAGAAGATTCCCTTGGAGGACCAGCTTAAAACCTTCGACCTCAATGCACAGATGCGAGGTCTCGGCCAGAAGTACCTCGGCATCCGCCCTGAATCGCACCAGCATGCTGTCTTCAGCAATGATGCCGTTCAGGCCAGCGGGAACCACCCTGTGCCGATCAGCAACTTCATGAACGCGCAGTACTTCTCCGAGATCACCATCAGCACTCCTGCTCAGAATTTCAGGGCATCCTCGACACTGGAAGCTCTACGCTCTGGGTCCCTCATCGTCTTGGGGTCTATGGTAGTAATCTCACAACAAGTCGAATCGTCTGCTTATTGACTACATAAGAACGGACCGATTTAGAACCATTAGCTCCGCGCTTGAGGGTTGTTTCCACAGGTTTGACTTCGGAACTTGGACATACCTGGATGTCCAACTCTATGACCTGGTTGCTATGCTTTGCCATTAACGAATCTCGATGGTTTAAGGCTGTCGAATAAATGTCCGCCTTCCCTGGTGCCAACTATGTACACTGGACTTTACTCTGTGAAGATATCGGTTTATGGGTTATACTACTTAGAAACTTCTCTGTGGCGTTTAGGGCGATTTGTTGTGGGATGTTCCATAGAACTCTTGTTCGCTCTATGTTAG]




>consensus_2214#1
CAGCAGCCACAACATCCCCTAATTCATTCAATACATCTGTGACCCGAAGTTTTCCATCAG
CTTTGGGTTCACAAATATTTCCTCTTCTCTTTTCATCTTAATCCCATCCGTCTGATATTA
TTCTGTTCGCAATCCCGATAGCTCCGCGACAAAGCCGCCCATCATGAAGGGAGCTATGAT
GACAGCAGCTGTGCTGCTTGGCACCGCCGAGGCCGGTGTCCACAAGCTCAAGATGAAGAA
GATTCCCTTGGAGGACCAGCTTAAAACCTTCGACCTCAATGCACAGATGCGAGGTCTCGG
CCAGAAGTACCTCGGCATCCGCCCTGAATCGCACCAGCATGCTGTCTTCAGCAATGATGC
CGTTCAGGCCAGCGGGAACCACCCTGTGCCGATCAGCAACTTCATGAACGCGCAGTACTT
CTCCGAGATCACCATCAGCACTCCTGCTCAGAATTTCAGGGCATCCTCGACACTGGAAGC
TCTACGCTCTGGGTCCCTCATCGTCTTGGGGTCTATGGTAGTAATCTCACAACAAGTCGA
ATCGTCTGCTTATTGACTACATAAGAACGGACCGATTTAGAACCATTAGCTCCGCGCTTG
AGGGTTGTTTCCACAGGTTTGACTTCGGAACTTGGACATACCTGGATGTCCAACTCTATG
ACCTGGTTGCTATGCTTTGCCATTAACGAATCTCGATGGTTTAAGGCTGTCGAATAAATG
TCCGCCTTCCCTGGTGCCAACTATGTACACTGGACTTTACTCTGTGAAGATATCGGTTTA
TGGGTTATACTACTTAGAAACTTCTCTGTGGCGTTTAGGGCGATTTGTTGTGGGATGTTC
CATAGAACTCTTGTTCGCTCTATGTTAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2214#0      GAATTCGGCACGAGTCCAGCAGCCACAACATCCCCTAATTCATTCAATACATCTGTGACC 60
consensus_2214#1      ----------------CAGCAGCCACAACATCCCCTAATTCATTCAATACATCTGTGACC 44
                                      ********************************************

consensus_2214#0      CGAAGTTTTCCATCAGCTTTGGGTTCACAAATATTTCCTCTTCTCTTTTCATCTTAATCC 120
consensus_2214#1      CGAAGTTTTCCATCAGCTTTGGGTTCACAAATATTTCCTCTTCTCTTTTCATCTTAATCC 104
                      ************************************************************

consensus_2214#0      CATCCGTCTGATATTATTCTGTTCGCAATCCCGATAGCTCCGCGACAAAGCCGCCCATCA 180
consensus_2214#1      CATCCGTCTGATATTATTCTGTTCGCAATCCCGATAGCTCCGCGACAAAGCCGCCCATCA 164
                      ************************************************************

consensus_2214#0      TGAAGGGAGCTATGATGACAGCAGCTGTGCTGCTTGGCACCGCCGAGGCCGGTGTCCACA 240
consensus_2214#1      TGAAGGGAGCTATGATGACAGCAGCTGTGCTGCTTGGCACCGCCGAGGCCGGTGTCCACA 224
                      ************************************************************

consensus_2214#0      AGCTCAAGATGAAGAAGATTCCCTTGGAGGACCAGCTTAAAACCTTCGACCTCAATGCAC 300
consensus_2214#1      AGCTCAAGATGAAGAAGATTCCCTTGGAGGACCAGCTTAAAACCTTCGACCTCAATGCAC 284
                      ************************************************************

consensus_2214#0      AGATGCGAGGTCTCGGCCAGAAGTACCTCGGCATCCGCCCTGAATCGCACCAGCAGGCTG 360
consensus_2214#1      AGATGCGAGGTCTCGGCCAGAAGTACCTCGGCATCCGCCCTGAATCGCACCAGCATGCTG 344
                      ******************************************************* ****

consensus_2214#0      TCTTCAGCAATGATGCCGTTCAGGCCAGCGGGAACCACCCTGTGCCGATCAGCAACTTCA 420
consensus_2214#1      TCTTCAGCAATGATGCCGTTCAGGCCAGCGGGAACCACCCTGTGCCGATCAGCAACTTCA 404
                      ************************************************************

consensus_2214#0      TGAACGCGCAGTACTTCTCTCAGATCACCATCGGCACTCCTCCCCAGAATTTCAAGGTCA 480
consensus_2214#1      TGAACGCGCAGTACTTCTCCGAGATCACCATCAGCACTCCTGCTCAGAATTTCAGGG-CA 463
                      *******************  *********** ******** * ********** ** **

consensus_2214#0      TCCTCGACACTGGAAGCTCTAAACCTCTGGTCCCTCATCGTCTNGCGGTCTATNCGCTGT 540
consensus_2214#1      TCCTCGACACTGGAAGCTCTACGCTCTGGGTCCCTCATCGTCTTGGGGTCTATGGTAGTA 523
                      *********************  *    *************** * *******       

consensus_2214#0      ATCTCACAACAAGTACGATCGCTT-CTCATC-ACTACAAGAAAACNGGACGAGTTAGA-T 597
consensus_2214#1      ATCTCACAACAAGTCGAATCGTCTGCTTATTGACTACATAAGAACGGACCGATTTAGAAC 583
                      **************   ****  * ** **  ******  * *** *  *** *****  

consensus_2214#0      CATATGGTCNGCGCATGGAGGTGTCTTCNACATGTTTACCATCGAGACTCAGATCAGAAC 657
consensus_2214#1      CATTAGCTCCGCGCTTGAGGGTTGTTTCCACAGGTTTGACTTCGGAACTTGGAC--ATAC 641
                      ***  * ** **** **  ***   *** *** ****  * ***  ***  **     **

consensus_2214#0      TTGCTTCTCGAACTCTAAAGACCTGGTGCTTTGCTTTGCGATTA-CGAAACCCGATG-TG 715
consensus_2214#1      CTGGATGTCCAACTCTATGACCTGGTTGCTATGCTTTGCCATTAACGAATCTCGATGGTT 701
                       **  * ** *******    *  * **** ******** **** **** * ***** * 

consensus_2214#0      TAAAGCTGCGGAA-AAATGCCC-TCTATCCTGG-ACAAACTAT-TAAACTGTTCCTT-CT 770
consensus_2214#1      TAAGGCTGTCGAATAAATGTCCGCCTTCCCTGGTGCCAACTATGTACACTGGACTTTACT 761
                      *** ****  *** ***** **  **  *****  * ****** ** ****  * ** **

consensus_2214#0      CTTAAAAAAAACAGGAGTTTGGTTGGCCNCCGAAACAAACCCCCACGCGTGTGGGTTTGT 830
consensus_2214#1      CTGTGAAGATATCGGTTTATGGGTTATACTACTTAGAAACTTCTCTG--TGGCGTTTAGG 819
                      **   ** * *  **  * *** *          * ****  *   *  **  * ** * 

consensus_2214#0      GTGTTTTCTTAAATGATACNCCTTCTCTTCACTTCTTCTANTCTTTTNTCTTCTGGAAGG 890
consensus_2214#1      GCGATTTGTTGTGGGATGTTCCATAGAACTCTTGTTCGCTCTATGTTAG----------- 868
                      * * *** **    ***   ** *        *  *     * * **             

consensus_2214#0      AAGAAGAGATGATGAACATGCACTCCGATATGTTG 925
consensus_2214#1      -----------------------------------