These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2219#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 884 fasta sequence [GATTTCGACCTCTGCCACTTGAAATCGCCCATTCGACGCCGACCCGAGTAGACGACCGACCAGCAAACCTCCAAAACACCAAAGGCACCGGGCCCCCGAAGGAGAATAAACAACACATCAGACACAATGGCCGACGCAGCACCCCGTGGCGGCGGTTTCGCATCGCGTGGAGGAGACCGTGGCGGCGACCGCGGCCGTGGTGACCGTGGCCGTGGACGTGGACGTGGCCGTGGCCGTCGTGGCGGCAAGTCCGACGAGAAGGAGTGGCAGCCCGTTACCAAGCTCGGCCGTCTCGTGAAGGCCGGCAAGATCAAGAGCATGGAGGAGATCTACTTGCACTCGCTCCCCATCAAGGAGTACCAGATCGTCGACTNTNTCCTGCCCAAGCTCAAGGACGAGGTCATGAAGATCAAGCCCGTCCAGAAGCAGACCCGTGCCCGTCAGCGTACCCGTNTCAAAGCCATCGTCATCATTGGTGAACTCGANGGGCACGTTGGTCTGGTATCAAGACCTCCAAGGAGTTGCACTGCTATCGCGCGCCATCATTATTGCCAGCTTACGTCATCCCCGTCCGTCGGGTAACTGGGTACACACTNGTACTCTACTCNCTCCCGTCAAGAAACCGCAAGTGGGTCGTACTGCGCCTATCCTCTCNCGGACCGGCTGGTGCTNCCTTGAACTTTCTCACCTGTGTATAGATCCTACATGTGAGGTACAAACTAAACACTAAGCATTTTGCGTAAATAGGTTTCCACTGAGACACTATACCCTGAGTCCTGGCCGCGTTAAAAGAGATATTTGGCGTTTTTTTTTTNTGGTTTTTTTGTGCGCGCCCCCCCCNNANAAAAAAAAAAAAAAAAAAAAGGTTGGTTTTTTATTTTGGC] [+] EMBL AW155491 [GATTTCGACCTCTGCCACTTGAAATCGCCCATTCGACGCCGACCCGAGTAGACGACCGACCAGCAAACCTCCAAAACACCAAAGGCACCGGGCCCCCGAAGGAGAATAAACAACACATCAGACACAATGGCCGACGCAGCACCCCGTGGCGGCGGTTTCGCATCGCGTGGAGGAGACCGTGGCGGCGACCGCGGCCGTGGTGACCGTGGCCGTGGACGTGGACGTGGCCGTGGCCGTCGTGGCGGCAAGTCCGACGAGAAGGAGTGGCAGCCCGTTACCAAGCTCGGCCGTCTCGTGAAGGCCGGCAAGATCAAGAGCATGGAGGAGATCTACTTGCACTCGCTCCCCATCAAGGAGTACCAGATCGTCGACTNTNTCCTGCCCAAGCTCAAGGACGAGGTCATGAAGATCAAGCCCGTCCAGAAGCAGACCCGTGCCCGTCAGCGTACCCGTNTCAAAGCCATCGTCATCATTGGTGAACTCGANGGGCACGTTGGTCTGGTATCAAGACCTCCAAGGAGTTGCACTGCTATCGCGCGCCATCATTATTGCCAGCTTACGTCATCCCCGTCCGTCGGGTAACTGGGTACACACTNGTACTCTACTCNCTCCCGTCAAGAAACCGCAAGTGGGTCGTACTGCGCCTATCCTCTCNCGGACCGGCTGGTGCTNCCTTGAACTTTCTCACCTGTGTATAGATCCTACATGTGAGGTACAAACTAAACACTAAGCATTTTGCGTAAATAGGTTTCCACTGAGACACTATACCCTGAGTCCTGGCCGCGTTAAAAGAGATATTTGGCGTTTTTTTTTTNTGGTTTTTTTGTGCGCGCCCCCCCCNNANAAAAAAAAAAAAAAAAAAAAGGTTGGTTTTTTATTTTGGC] consensusID : consensus_2219#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 650 fasta sequence [GATTTCGACCTCTGCCACTTGAAATCGCCCATTCGACGCCGACCCGAGTAGACGACCGACCAGCAAACCTCCAAAACACCAAAGGCACCGGGCCCCCGAAGGAGAATAAACAACACATCAGACACAATGGCCGACGCAGCACCCCGTGGCGGCGGTTTCGCATCGCGTGGAGGAGACCGTGGCGGCGACCGCGGCCGTGGTGACCGTGGCCGTGGACGTGGACGTGGCCGTGGCCGTCGTGGCGGCAAGTCCGACGAGAAGGAGTGGCAGCCCGTTACCAAGCTCGGCCGTCTCGTGAAGGCCGGCAAGATCAAGAGCATGGAGGAGATCTACTTGCACTCGCTCCCCATCAAGGAGTACCAGATCGTCGACTTTTTCCTGCCCAAGCTCAAGGACGAGGTCATGAAGATCAAGCCCGTCCAGAAGCAGACCCGTGCCGGGCAGCGTACCCGTGTTAAAGGGCTATGGCATTATTTGGGAGACTCCCAGGGCCACTTGGGTCTGGGGTATAAAGACCTCCAAGGAGGTTGCCCTGCTTTCCGCCCCGCCCTCATTATTGCCAAGCTTAGCGTNATCCCCCGTCGGCGTGTTAACTGGGGAACAAACCCTTGTACTCCCTACTCGCTCGGGCAAAGAGAGCGGCAAGTGCG] [+] EMBL AW155306 [GATTTCGACCTCTGCCACTTGAAATCGCCCATTCGACGCCGACCCGAGTAGACGACCGACCAGCAAACCTCCAAAACACCAAAGGCACCGGGCCCCCGAAGGAGAATAAACAACACATCAGACACAATGGCCGACGCAGCACCCCGTGGCGGCGGTTTCGCATCGCGTGGAGGAGACCGTGGCGGCGACCGCGGCCGTGGTGACCGTGGCCGTGGACGTGGACGTGGCCGTGGCCGTCGTGGCGGCAAGTCCGACGAGAAGGAGTGGCAGCCCGTTACCAAGCTCGGCCGTCTCGTGAAGGCCGGCAAGATCAAGAGCATGGAGGAGATCTACTTGCACTCGCTCCCCATCAAGGAGTACCAGATCGTCGACTTTTTCCTGCCCAAGCTCAAGGACGAGGTCATGAAGATCAAGCCCGTCCAGAAGCAGACCCGTGCCGGGCAGCGTACCCGTGTTAAAGGGCTATGGCATTATTTGGGAGACTCCCAGGGCCACTTGGGTCTGGGGTATAAAGACCTCCAAGGAGGTTGCCCTGCTTTCCGCCCCGCCCTCATTATTGCCAAGCTTAGCGTNATCCCCCGTCGGCGTGTTAACTGGGGAACAAACCCTTGTACTCCCTACTCGCTCGGGCAAAGAGAGCGGCAAGTGCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2219#0 GATTTCGACCTCTGCCACTTGAAATCGCCCATTCGACGCCGACCCGAGTAGACGACCGAC 60 consensus_2219#1 GATTTCGACCTCTGCCACTTGAAATCGCCCATTCGACGCCGACCCGAGTAGACGACCGAC 60 ************************************************************ consensus_2219#0 CAGCAAACCTCCAAAACACCAAAGGCACCGGGCCCCCGAAGGAGAATAAACAACACATCA 120 consensus_2219#1 CAGCAAACCTCCAAAACACCAAAGGCACCGGGCCCCCGAAGGAGAATAAACAACACATCA 120 ************************************************************ consensus_2219#0 GACACAATGGCCGACGCAGCACCCCGTGGCGGCGGTTTCGCATCGCGTGGAGGAGACCGT 180 consensus_2219#1 GACACAATGGCCGACGCAGCACCCCGTGGCGGCGGTTTCGCATCGCGTGGAGGAGACCGT 180 ************************************************************ consensus_2219#0 GGCGGCGACCGCGGCCGTGGTGACCGTGGCCGTGGACGTGGACGTGGCCGTGGCCGTCGT 240 consensus_2219#1 GGCGGCGACCGCGGCCGTGGTGACCGTGGCCGTGGACGTGGACGTGGCCGTGGCCGTCGT 240 ************************************************************ consensus_2219#0 GGCGGCAAGTCCGACGAGAAGGAGTGGCAGCCCGTTACCAAGCTCGGCCGTCTCGTGAAG 300 consensus_2219#1 GGCGGCAAGTCCGACGAGAAGGAGTGGCAGCCCGTTACCAAGCTCGGCCGTCTCGTGAAG 300 ************************************************************ consensus_2219#0 GCCGGCAAGATCAAGAGCATGGAGGAGATCTACTTGCACTCGCTCCCCATCAAGGAGTAC 360 consensus_2219#1 GCCGGCAAGATCAAGAGCATGGAGGAGATCTACTTGCACTCGCTCCCCATCAAGGAGTAC 360 ************************************************************ consensus_2219#0 CAGATCGTCGACTNTNTCCTGCCCAAGCTCAAGGACGAGGTCATGAAGATCAAGCCCGTC 420 consensus_2219#1 CAGATCGTCGACTTTTTCCTGCCCAAGCTCAAGGACGAGGTCATGAAGATCAAGCCCGTC 420 ************* * ******************************************** consensus_2219#0 CAGAAGCAGACCCGTGCCCGTCAGCGTACCCGTNTCAAAGCCAT-CGTCATCATT--GGT 477 consensus_2219#1 CAGAAGCAGACCCGTGCCGGGCAGCGTACCCGTGTTAAAGGGCTATGGCATTATTTGGGA 480 ****************** * ************ * **** * * *** *** ** consensus_2219#0 GAACTCGANGGGCACGTTGGTCTGG--TATCAAGACCTCCAAGGAG-TTGCACTGCTATC 534 consensus_2219#1 GACTCCCAGGGCCACTTGGGTCTGGGGTATAAAGACCTCCAAGGAGGTTGCCCTGCTTTC 540 ** * * ** *** * ******* *** *************** **** ***** ** consensus_2219#0 G--CGCGCCATCATTATTGCCA-GCTTA-CGTCATCCCCGTCCGTCGGGT-AACTGGG-- 587 consensus_2219#1 CGCCCCGCCCTCATTATTGCCAAGCTTAGCGTNATCCCCCGTCGGCGTGTTAACTGGGGA 600 * **** ************ ***** *** ****** ** ** ** ******* consensus_2219#0 -TACACACTNGTACTC--TACTCNCTCCCGTCAAGAAACCG-CAAGTGGGTCGTACTGCG 643 consensus_2219#1 ACAAACCCTTGTACTCCCTACTCGCTCGGGCAAAGAGAGCGGCAAGTGCG---------- 650 * ** ** ****** ***** *** * **** * ** ****** * consensus_2219#0 CCTATCCTCTCNCGGACCGGCTGGTGCTNCCTTGAACTTTCTCACCTGTGTATAGATCCT 703 consensus_2219#1 ------------------------------------------------------------ consensus_2219#0 ACATGTGAGGTACAAACTAAACACTAAGCATTTTGCGTAAATAGGTTTCCACTGAGACAC 763 consensus_2219#1 ------------------------------------------------------------ consensus_2219#0 TATACCCTGAGTCCTGGCCGCGTTAAAAGAGATATTTGGCGTTTTTTTTTTNTGGTTTTT 823 consensus_2219#1 ------------------------------------------------------------ consensus_2219#0 TTGTGCGCGCCCCCCCCNNANAAAAAAAAAAAAAAAAAAAAGGTTGGTTTTTTATTTTGG 883 consensus_2219#1 ------------------------------------------------------------ consensus_2219#0 C 884 consensus_2219#1 - |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||