cluster # 2222

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Oryza sativa
cluster # 2222 cluster # 2222 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2222#0 length = 814 sequences # 1

consensus_2222#1 length = 642 sequences # 1

consensusID : consensus_2222#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 814
fasta sequence

                              [ACAATCTGACAACCAAACAACCACAACTCTCAACCCAATCCAATAACTCAATCTCACTTTCCCATGAACAACAACACCAAATCATTCACCATGTCTTCCATCGTCAACAAGGTCAAGGACGCTCTCCACCACGACAAGTCTCAGGAGACTAAGACTGGCACCCACGGCCCCCACGACAGCAAGGCTGCCAACGTCGCCGACCCCCGCGTCGACTCTGACCGTGACCACCGCGCCAACCCGGCTTCGGCCACTGGCGCCAACACCCACGCCACCAACCCTTCGATGGCCGGCCACGGCAACGCCCACGGTGCCACCAGCACCACCGGCACCAGCGGTCTTGGCTCGACTGGTACCACCGGCACCGGCATGACCGGCAGCCACGGCACCTCTGGCATGACCAGCTCCAACAACTACNGGAGCTCCGTCTTGGCTCCACCGGTACCTCACCAACTCGGGCCCCACAGGTTCAAATGATGAAAAGGCCGACCCCCGGTTACTCTACCGGAACACCTGCTGCCCCGGTGCATAATGCTCCACAATTCGAAATTGGTTTGGTCACCGCACATGGCCGATGACCGTCATGCTTTGGTTACCCTCCAACTGGAAGATGTCAAAAACGAATGGCTTTGTCCGGCCTGGCGAAAACGGCCGGCCCGGGTTGGGCGCCGCTTAAAATGGCCAATTTAATAAGTAAACGCACCCCCCGCAATGGGAGAAAAAAAAAAAAAATATTCTTTAATTATTAAGCCCTCCCCCTCCCCCCTAAAAAACCACAAANNNAAAAACCGGAGAGGGGGGAAATGGTTTTTGCTTT]

[+] EMBL AW155536             [ACAATCTGACAACCAAACAACCACAACTCTCAACCCAATCCAATAACTCAATCTCACTTTCCCATGAACAACAACACCAAATCATTCACCATGTCTTCCATCGTCAACAAGGTCAAGGACGCTCTCCACCACGACAAGTCTCAGGAGACTAAGACTGGCACCCACGGCCCCCACGACAGCAAGGCTGCCAACGTCGCCGACCCCCGCGTCGACTCTGACCGTGACCACCGCGCCAACCCGGCTTCGGCCACTGGCGCCAACACCCACGCCACCAACCCTTCGATGGCCGGCCACGGCAACGCCCACGGTGCCACCAGCACCACCGGCACCAGCGGTCTTGGCTCGACTGGTACCACCGGCACCGGCATGACCGGCAGCCACGGCACCTCTGGCATGACCAGCTCCAACAACTACNGGAGCTCCGTCTTGGCTCCACCGGTACCTCACCAACTCGGGCCCCACAGGTTCAAATGATGAAAAGGCCGACCCCCGGTTACTCTACCGGAACACCTGCTGCCCCGGTGCATAATGCTCCACAATTCGAAATTGGTTTGGTCACCGCACATGGCCGATGACCGTCATGCTTTGGTTACCCTCCAACTGGAAGATGTCAAAAACGAATGGCTTTGTCCGGCCTGGCGAAAACGGCCGGCCCGGGTTGGGCGCCGCTTAAAATGGCCAATTTAATAAGTAAACGCACCCCCCGCAATGGGAGAAAAAAAAAAAAAATATTCTTTAATTATTAAGCCCTCCCCCTCCCCCCTAAAAAACCACAAANNNAAAAACCGGAGAGGGGGGAAATGGTTTTTGCTTT]




>consensus_2222#0
ACAATCTGACAACCAAACAACCACAACTCTCAACCCAATCCAATAACTCAATCTCACTTT
CCCATGAACAACAACACCAAATCATTCACCATGTCTTCCATCGTCAACAAGGTCAAGGAC
GCTCTCCACCACGACAAGTCTCAGGAGACTAAGACTGGCACCCACGGCCCCCACGACAGC
AAGGCTGCCAACGTCGCCGACCCCCGCGTCGACTCTGACCGTGACCACCGCGCCAACCCG
GCTTCGGCCACTGGCGCCAACACCCACGCCACCAACCCTTCGATGGCCGGCCACGGCAAC
GCCCACGGTGCCACCAGCACCACCGGCACCAGCGGTCTTGGCTCGACTGGTACCACCGGC
ACCGGCATGACCGGCAGCCACGGCACCTCTGGCATGACCAGCTCCAACAACTACNGGAGC
TCCGTCTTGGCTCCACCGGTACCTCACCAACTCGGGCCCCACAGGTTCAAATGATGAAAA
GGCCGACCCCCGGTTACTCTACCGGAACACCTGCTGCCCCGGTGCATAATGCTCCACAAT
TCGAAATTGGTTTGGTCACCGCACATGGCCGATGACCGTCATGCTTTGGTTACCCTCCAA
CTGGAAGATGTCAAAAACGAATGGCTTTGTCCGGCCTGGCGAAAACGGCCGGCCCGGGTT
GGGCGCCGCTTAAAATGGCCAATTTAATAAGTAAACGCACCCCCCGCAATGGGAGAAAAA
AAAAAAAAATATTCTTTAATTATTAAGCCCTCCCCCTCCCCCCTAAAAAACCACAAANNN
AAAAACCGGAGAGGGGGGAAATGGTTTTTGCTTT

consensusID : consensus_2222#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 642
fasta sequence

                              [ACAATCTGACAACCAAACAACCACAACTCTCAACCCAATGCAATAACTCAATCTCACTTTCCCATCAACAACAACACCAAATCATTCACCATGTCTTCCATCGTCAACAAGGTCAAGGACGCTCTCCACCACGACAAGTCTCAGGAGACTAAGACTGGCACCCACGGCCCCCACGACAGCAAGGCTGCCAACGTCGCCGACCCCCGCGTCGACTCTGACCGTGACCACCGCGCCAACCCGGCTTCGGCCACTGGCGCCAACACCCACGCCACCAACCCTTCGATGGCCGGCCACGGCAACGCCCACGGTGCCACCAGCACCACCGGCACCAGCGGTCTTGGCTCGACTGGTACCACCGGCACCGGCATGACCGGCAGCCACGGCACCTCTGGCATGACCAGCTTCAACAACTACGGGAGCTTCCGTCTTTGCTTCAACGGGAACTTCACCCACATTGGGCCCCACACGTGTCAAACATGATGAACAAGGGCCGACCCCCGCGTAGACTCTGACCGTGACCACCGTGCTGCCCCCGGGGCATGACTGGCTCCACAACTACNGCAGCTCGGGTCTTGGGCTCACCGCACCACTGGTACCGGCATGACCGGCTCCCATGGCACTNGGCATGAACCAGCTCCACAC]

[+] EMBL AW155352             [ACAATCTGACAACCAAACAACCACAACTCTCAACCCAATGCAATAACTCAATCTCACTTTCCCATCAACAACAACACCAAATCATTCACCATGTCTTCCATCGTCAACAAGGTCAAGGACGCTCTCCACCACGACAAGTCTCAGGAGACTAAGACTGGCACCCACGGCCCCCACGACAGCAAGGCTGCCAACGTCGCCGACCCCCGCGTCGACTCTGACCGTGACCACCGCGCCAACCCGGCTTCGGCCACTGGCGCCAACACCCACGCCACCAACCCTTCGATGGCCGGCCACGGCAACGCCCACGGTGCCACCAGCACCACCGGCACCAGCGGTCTTGGCTCGACTGGTACCACCGGCACCGGCATGACCGGCAGCCACGGCACCTCTGGCATGACCAGCTTCAACAACTACGGGAGCTTCCGTCTTTGCTTCAACGGGAACTTCACCCACATTGGGCCCCACACGTGTCAAACATGATGAACAAGGGCCGACCCCCGCGTAGACTCTGACCGTGACCACCGTGCTGCCCCCGGGGCATGACTGGCTCCACAACTACNGCAGCTCGGGTCTTGGGCTCACCGCACCACTGGTACCGGCATGACCGGCTCCCATGGCACTNGGCATGAACCAGCTCCACAC]




>consensus_2222#1
ACAATCTGACAACCAAACAACCACAACTCTCAACCCAATGCAATAACTCAATCTCACTTT
CCCATCAACAACAACACCAAATCATTCACCATGTCTTCCATCGTCAACAAGGTCAAGGAC
GCTCTCCACCACGACAAGTCTCAGGAGACTAAGACTGGCACCCACGGCCCCCACGACAGC
AAGGCTGCCAACGTCGCCGACCCCCGCGTCGACTCTGACCGTGACCACCGCGCCAACCCG
GCTTCGGCCACTGGCGCCAACACCCACGCCACCAACCCTTCGATGGCCGGCCACGGCAAC
GCCCACGGTGCCACCAGCACCACCGGCACCAGCGGTCTTGGCTCGACTGGTACCACCGGC
ACCGGCATGACCGGCAGCCACGGCACCTCTGGCATGACCAGCTTCAACAACTACGGGAGC
TTCCGTCTTTGCTTCAACGGGAACTTCACCCACATTGGGCCCCACACGTGTCAAACATGA
TGAACAAGGGCCGACCCCCGCGTAGACTCTGACCGTGACCACCGTGCTGCCCCCGGGGCA
TGACTGGCTCCACAACTACNGCAGCTCGGGTCTTGGGCTCACCGCACCACTGGTACCGGC
ATGACCGGCTCCCATGGCACTNGGCATGAACCAGCTCCACAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2222#0      ACAATCTGACAACCAAACAACCACAACTCTCAACCCAATCCAATAACTCAATCTCACTTT 60
consensus_2222#1      ACAATCTGACAACCAAACAACCACAACTCTCAACCCAATGCAATAACTCAATCTCACTTT 60
                      *************************************** ********************

consensus_2222#0      CCCATGAACAACAACACCAAATCATTCACCATGTCTTCCATCGTCAACAAGGTCAAGGAC 120
consensus_2222#1      CCCATCAACAACAACACCAAATCATTCACCATGTCTTCCATCGTCAACAAGGTCAAGGAC 120
                      ***** ******************************************************

consensus_2222#0      GCTCTCCACCACGACAAGTCTCAGGAGACTAAGACTGGCACCCACGGCCCCCACGACAGC 180
consensus_2222#1      GCTCTCCACCACGACAAGTCTCAGGAGACTAAGACTGGCACCCACGGCCCCCACGACAGC 180
                      ************************************************************

consensus_2222#0      AAGGCTGCCAACGTCGCCGACCCCCGCGTCGACTCTGACCGTGACCACCGCGCCAACCCG 240
consensus_2222#1      AAGGCTGCCAACGTCGCCGACCCCCGCGTCGACTCTGACCGTGACCACCGCGCCAACCCG 240
                      ************************************************************

consensus_2222#0      GCTTCGGCCACTGGCGCCAACACCCACGCCACCAACCCTTCGATGGCCGGCCACGGCAAC 300
consensus_2222#1      GCTTCGGCCACTGGCGCCAACACCCACGCCACCAACCCTTCGATGGCCGGCCACGGCAAC 300
                      ************************************************************

consensus_2222#0      GCCCACGGTGCCACCAGCACCACCGGCACCAGCGGTCTTGGCTCGACTGGTACCACCGGC 360
consensus_2222#1      GCCCACGGTGCCACCAGCACCACCGGCACCAGCGGTCTTGGCTCGACTGGTACCACCGGC 360
                      ************************************************************

consensus_2222#0      ACCGGCATGACCGGCAGCCACGGCACCTCTGGCATGACCAGCTCCAACAACTACNGGAGC 420
consensus_2222#1      ACCGGCATGACCGGCAGCCACGGCACCTCTGGCATGACCAGCTTCAACAACTACGGGAGC 420
                      ******************************************* ********** *****

consensus_2222#0      T-CCGTCTTGGCTCCACCGGTA-CCTCACCAAC-TCGGGCCCCACAGGT-TCAAA--TGA 474
consensus_2222#1      TTCCGTCTTTGCTTCAACGGGAACTTCACCCACATTGGGCCCCACACGTGTCAAACATGA 480
                      * ******* *** ** *** * * ***** ** * ********** ** *****  ***

consensus_2222#0      TGAA--AAGGCCGACCCCCGGTTA--CTCT-ACCG-GAACACC-TGCTGCCCC-GGTGCA 526
consensus_2222#1      TGAACAAGGGCCGACCCCCGCGTAGACTCTGACCGTGACCACCGTGCTGCCCCCGGGGCA 540
                      ****  * ************  **  **** **** ** **** ********* ** ***

consensus_2222#0      TAAT--GCTCCACAATTCGAAATTGGTTTGGTCACCGCACATGGCCGATGACCGTCAT-G 583
consensus_2222#1      TGACTGGCTCCACAACT--ACNGCAGCTCGGGTCTTGGGCTCACCGCACCACTGGTACCG 598
                      * *   ********* *  *     * * **     *  *    *  *  ** *  *  *

consensus_2222#0      CTTTGGTTACCCTCCAACTGGAAGATGTCAAAAACGAATGGCTTTGTCCGGCCTGGCGAA 643
consensus_2222#1      GCATGACCGGCTCCCA--TGGCACTNGGCATGAAC---CAGCTCCACAC----------- 642
                         **     *  ***  *** *   * **  ***     ***     *           

consensus_2222#0      AACGGCCGGCCCGGGTTGGGCGCCGCTTAAAATGGCCAATTTAATAAGTAAACGCACCCC 703
consensus_2222#1      ------------------------------------------------------------
                                                                                  

consensus_2222#0      CCGCAATGGGAGAAAAAAAAAAAAAATATTCTTTAATTATTAAGCCCTCCCCCTCCCCCC 763
consensus_2222#1      ------------------------------------------------------------
                                                                                  

consensus_2222#0      TAAAAAACCACAAANNNAAAAACCGGAGAGGGGGGAAATGGTTTTTGCTTT 814
consensus_2222#1      ---------------------------------------------------