cluster # 2224

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Oryza sativa
cluster # 2224 cluster # 2224 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2224#0 length = 899 sequences # 1

consensus_2224#1 length = 632 sequences # 1

consensusID : consensus_2224#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 899
fasta sequence

                              [AGCCTGCAATCGCCTACTCACCTACTCACCTACTCACCTACTCATCAACTCACCAACTCGCAAGGTCTTCTCTACAGCCATCGAGCTTCATCATTAACTTTTGATCCACCCAACAACCAACCTCAAAAACCTCTATTCATCATGCAGCTCACTACCGTCCTTCCTCTGGCCTTGGTCGCCCTCTCCTCGGCCATGCCCGAGCCGACTCAGGCACCGGCCCTGGCCCAGGTTGAGCGTCGTCAACAGACCACCGCAACCCCCACCAACAGCGCTTTCAGCAGCGTGACGAGCCTCGCCTCGCTTCTCGGCCAATGCGGCTCGTCGCTCAGCTCCCTCCAGAGCAACTTCCCCGCCATCCCTACCGCCCTGAACCCCTACGTCGGCCTGGTCTTCCAGGACTCCAACTGCACCTTCACCATGGCCGAGTCGGTCAGCTCCGACTNTGTCAAGCTGTCGTCCGACGTGAGCGTGTGGGCCTCGACCAGCTGGAGCTCNGTCAAAGGCCGCAGCAGCACCTTGCTCGCCGTCTTGAGCACCCTCGGGCTTTAACCTCGACACCTCAACTTGTCGCCCAGCGTCGCTGTCGCTTGACCGGNGCNACCAGACCANGACCGAGAACTCAGGAGATTGCGTAACGAAGCACCGCCACTAACCACCAAACAACGNTGTGTGCGTGTAACGTGGACGTGGAAAAGCCTTGAACTTTGACTCCAACACCGAAGTGCGCTGCCAACACTCGGTTCTTTCTGGGCTGCGTTTGGTTCGTATGGATAAGAAACGTGGAGAATAATTACTTCACCGTGATGGAGAGGGGCAAATATCTTTTCTTCGCTGGGTTGCGTTTCTNNCNNNNNNAAAAATAAAAAAAAAAAAAAAAAAGCGCGCCCTCTCCTCCTATC]

[+] EMBL AW155542             [AGCCTGCAATCGCCTACTCACCTACTCACCTACTCACCTACTCATCAACTCACCAACTCGCAAGGTCTTCTCTACAGCCATCGAGCTTCATCATTAACTTTTGATCCACCCAACAACCAACCTCAAAAACCTCTATTCATCATGCAGCTCACTACCGTCCTTCCTCTGGCCTTGGTCGCCCTCTCCTCGGCCATGCCCGAGCCGACTCAGGCACCGGCCCTGGCCCAGGTTGAGCGTCGTCAACAGACCACCGCAACCCCCACCAACAGCGCTTTCAGCAGCGTGACGAGCCTCGCCTCGCTTCTCGGCCAATGCGGCTCGTCGCTCAGCTCCCTCCAGAGCAACTTCCCCGCCATCCCTACCGCCCTGAACCCCTACGTCGGCCTGGTCTTCCAGGACTCCAACTGCACCTTCACCATGGCCGAGTCGGTCAGCTCCGACTNTGTCAAGCTGTCGTCCGACGTGAGCGTGTGGGCCTCGACCAGCTGGAGCTCNGTCAAAGGCCGCAGCAGCACCTTGCTCGCCGTCTTGAGCACCCTCGGGCTTTAACCTCGACACCTCAACTTGTCGCCCAGCGTCGCTGTCGCTTGACCGGNGCNACCAGACCANGACCGAGAACTCAGGAGATTGCGTAACGAAGCACCGCCACTAACCACCAAACAACGNTGTGTGCGTGTAACGTGGACGTGGAAAAGCCTTGAACTTTGACTCCAACACCGAAGTGCGCTGCCAACACTCGGTTCTTTCTGGGCTGCGTTTGGTTCGTATGGATAAGAAACGTGGAGAATAATTACTTCACCGTGATGGAGAGGGGCAAATATCTTTTCTTCGCTGGGTTGCGTTTCTNNCNNNNNNAAAAATAAAAAAAAAAAAAAAAAAGCGCGCCCTCTCCTCCTATC]




>consensus_2224#0
AGCCTGCAATCGCCTACTCACCTACTCACCTACTCACCTACTCATCAACTCACCAACTCG
CAAGGTCTTCTCTACAGCCATCGAGCTTCATCATTAACTTTTGATCCACCCAACAACCAA
CCTCAAAAACCTCTATTCATCATGCAGCTCACTACCGTCCTTCCTCTGGCCTTGGTCGCC
CTCTCCTCGGCCATGCCCGAGCCGACTCAGGCACCGGCCCTGGCCCAGGTTGAGCGTCGT
CAACAGACCACCGCAACCCCCACCAACAGCGCTTTCAGCAGCGTGACGAGCCTCGCCTCG
CTTCTCGGCCAATGCGGCTCGTCGCTCAGCTCCCTCCAGAGCAACTTCCCCGCCATCCCT
ACCGCCCTGAACCCCTACGTCGGCCTGGTCTTCCAGGACTCCAACTGCACCTTCACCATG
GCCGAGTCGGTCAGCTCCGACTNTGTCAAGCTGTCGTCCGACGTGAGCGTGTGGGCCTCG
ACCAGCTGGAGCTCNGTCAAAGGCCGCAGCAGCACCTTGCTCGCCGTCTTGAGCACCCTC
GGGCTTTAACCTCGACACCTCAACTTGTCGCCCAGCGTCGCTGTCGCTTGACCGGNGCNA
CCAGACCANGACCGAGAACTCAGGAGATTGCGTAACGAAGCACCGCCACTAACCACCAAA
CAACGNTGTGTGCGTGTAACGTGGACGTGGAAAAGCCTTGAACTTTGACTCCAACACCGA
AGTGCGCTGCCAACACTCGGTTCTTTCTGGGCTGCGTTTGGTTCGTATGGATAAGAAACG
TGGAGAATAATTACTTCACCGTGATGGAGAGGGGCAAATATCTTTTCTTCGCTGGGTTGC
GTTTCTNNCNNNNNNAAAAATAAAAAAAAAAAAAAAAAAGCGCGCCCTCTCCTCCTATC

consensusID : consensus_2224#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 632
fasta sequence

                              [AGCCTGCAATCGCCTACTCACCTACTCACCTACTCACCTACTCATCAACTCACCAACTCGCAAGGTCTTCTCTACAGCCATCGAGCTTCATCATTAACTTTTGATCCACCCAACAACCAACCTCAAAAACCTCTATTCATCATGCAGCTCACTACCGTCCTTCCTCTGGCCTTGGTCGCCCTCTCCTCGGCCATGCCCGAGCCGACTCAGGCACCGGCCCTGGCCCAGGTTGAGCGTCGTCAACAGACCACCGCAACCCCCACCAACAGCGCTTTCAGCAGCGTGACGAGCCTCGCCTCGCTTCTCGGCCAATGCGGCTCGTCGCTCAGCTCCCTCCAGAGCAACTTCCCCGCCATCCCTACCGCCCTGAACCCCTACGTCGGCCTGGTCTTCCAGGACTCCAACTGCACCTTCACCATGGCCGAGTCGGTCAGCTCCGACTTTGTCAAGCTGTCGTTCCACATGAGCGCGTGGGGCTCTAACAACTCTGGAGCTCGGCAAGGCCCCCAGCAACACCTGCTCGCCCGTCTTGAGCACCNCTGGCTTAACCTTGAAACCTAACTGCTTCCCAGCTGTGTGCTTCTGACCGGCGCAACCAACCAGACCGAGACTTCGATGATGCGTCACGAGCC]

[+] EMBL AW155368             [AGCCTGCAATCGCCTACTCACCTACTCACCTACTCACCTACTCATCAACTCACCAACTCGCAAGGTCTTCTCTACAGCCATCGAGCTTCATCATTAACTTTTGATCCACCCAACAACCAACCTCAAAAACCTCTATTCATCATGCAGCTCACTACCGTCCTTCCTCTGGCCTTGGTCGCCCTCTCCTCGGCCATGCCCGAGCCGACTCAGGCACCGGCCCTGGCCCAGGTTGAGCGTCGTCAACAGACCACCGCAACCCCCACCAACAGCGCTTTCAGCAGCGTGACGAGCCTCGCCTCGCTTCTCGGCCAATGCGGCTCGTCGCTCAGCTCCCTCCAGAGCAACTTCCCCGCCATCCCTACCGCCCTGAACCCCTACGTCGGCCTGGTCTTCCAGGACTCCAACTGCACCTTCACCATGGCCGAGTCGGTCAGCTCCGACTTTGTCAAGCTGTCGTTCCACATGAGCGCGTGGGGCTCTAACAACTCTGGAGCTCGGCAAGGCCCCCAGCAACACCTGCTCGCCCGTCTTGAGCACCNCTGGCTTAACCTTGAAACCTAACTGCTTCCCAGCTGTGTGCTTCTGACCGGCGCAACCAACCAGACCGAGACTTCGATGATGCGTCACGAGCC]




>consensus_2224#1
AGCCTGCAATCGCCTACTCACCTACTCACCTACTCACCTACTCATCAACTCACCAACTCG
CAAGGTCTTCTCTACAGCCATCGAGCTTCATCATTAACTTTTGATCCACCCAACAACCAA
CCTCAAAAACCTCTATTCATCATGCAGCTCACTACCGTCCTTCCTCTGGCCTTGGTCGCC
CTCTCCTCGGCCATGCCCGAGCCGACTCAGGCACCGGCCCTGGCCCAGGTTGAGCGTCGT
CAACAGACCACCGCAACCCCCACCAACAGCGCTTTCAGCAGCGTGACGAGCCTCGCCTCG
CTTCTCGGCCAATGCGGCTCGTCGCTCAGCTCCCTCCAGAGCAACTTCCCCGCCATCCCT
ACCGCCCTGAACCCCTACGTCGGCCTGGTCTTCCAGGACTCCAACTGCACCTTCACCATG
GCCGAGTCGGTCAGCTCCGACTTTGTCAAGCTGTCGTTCCACATGAGCGCGTGGGGCTCT
AACAACTCTGGAGCTCGGCAAGGCCCCCAGCAACACCTGCTCGCCCGTCTTGAGCACCNC
TGGCTTAACCTTGAAACCTAACTGCTTCCCAGCTGTGTGCTTCTGACCGGCGCAACCAAC
CAGACCGAGACTTCGATGATGCGTCACGAGCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2224#0      AGCCTGCAATCGCCTACTCACCTACTCACCTACTCACCTACTCATCAACTCACCAACTCG 60
consensus_2224#1      AGCCTGCAATCGCCTACTCACCTACTCACCTACTCACCTACTCATCAACTCACCAACTCG 60
                      ************************************************************

consensus_2224#0      CAAGGTCTTCTCTACAGCCATCGAGCTTCATCATTAACTTTTGATCCACCCAACAACCAA 120
consensus_2224#1      CAAGGTCTTCTCTACAGCCATCGAGCTTCATCATTAACTTTTGATCCACCCAACAACCAA 120
                      ************************************************************

consensus_2224#0      CCTCAAAAACCTCTATTCATCATGCAGCTCACTACCGTCCTTCCTCTGGCCTTGGTCGCC 180
consensus_2224#1      CCTCAAAAACCTCTATTCATCATGCAGCTCACTACCGTCCTTCCTCTGGCCTTGGTCGCC 180
                      ************************************************************

consensus_2224#0      CTCTCCTCGGCCATGCCCGAGCCGACTCAGGCACCGGCCCTGGCCCAGGTTGAGCGTCGT 240
consensus_2224#1      CTCTCCTCGGCCATGCCCGAGCCGACTCAGGCACCGGCCCTGGCCCAGGTTGAGCGTCGT 240
                      ************************************************************

consensus_2224#0      CAACAGACCACCGCAACCCCCACCAACAGCGCTTTCAGCAGCGTGACGAGCCTCGCCTCG 300
consensus_2224#1      CAACAGACCACCGCAACCCCCACCAACAGCGCTTTCAGCAGCGTGACGAGCCTCGCCTCG 300
                      ************************************************************

consensus_2224#0      CTTCTCGGCCAATGCGGCTCGTCGCTCAGCTCCCTCCAGAGCAACTTCCCCGCCATCCCT 360
consensus_2224#1      CTTCTCGGCCAATGCGGCTCGTCGCTCAGCTCCCTCCAGAGCAACTTCCCCGCCATCCCT 360
                      ************************************************************

consensus_2224#0      ACCGCCCTGAACCCCTACGTCGGCCTGGTCTTCCAGGACTCCAACTGCACCTTCACCATG 420
consensus_2224#1      ACCGCCCTGAACCCCTACGTCGGCCTGGTCTTCCAGGACTCCAACTGCACCTTCACCATG 420
                      ************************************************************

consensus_2224#0      GCCGAGTCGGTCAGCTCCGACTNTGTCAAGCTGTCGTCCGACGTGAGCGTGTGGGCCTCG 480
consensus_2224#1      GCCGAGTCGGTCAGCTCCGACTTTGTCAAGCTGTCGTTCCACATGAGCGCGTGGGGCTCT 480
                      ********************** ************** * ** ****** ***** *** 

consensus_2224#0      ACCAGCT--GGAGCTCNGTCAAAGGCCGCAGCAGCACCTTGCTCGCC-GTCTTGAGCACC 537
consensus_2224#1      AACAACTCTGGAGCTCGG-CAAGGCCCCCAGCAACACCT-GCTCGCCCGTCTTGAGCACC 538
                      * ** **  ******* * *** * ** ***** ***** ******* ************

consensus_2224#0      CTCGGGCTTTAACCTCGACACCTCAACTTGTCGCCCAGCGTCGCTGTCGCTTGACCGGNG 597
consensus_2224#1      NCTGG--CTTAACCTTGAAACCTAA--CTGCTTCCCAGCTGTGTGCTT--CTGACCGGCG 592
                         **   ******* ** **** *   **   ******   *   *    ******* *

consensus_2224#0      CNACCAGACCANGACCGAGAACTCAGGAGATTGCGTAACGAAGCACCGCCACTAACCACC 657
consensus_2224#1      CAACCAACC--AGACCGAGACTTC--GATGATGCGTCACGAGCC---------------- 632
                      * ****  *   ********  **  **   ***** ****  *                

consensus_2224#0      AAACAACGNTGTGTGCGTGTAACGTGGACGTGGAAAAGCCTTGAACTTTGACTCCAACAC 717
consensus_2224#1      ------------------------------------------------------------
                                                                                  

consensus_2224#0      CGAAGTGCGCTGCCAACACTCGGTTCTTTCTGGGCTGCGTTTGGTTCGTATGGATAAGAA 777
consensus_2224#1      ------------------------------------------------------------
                                                                                  

consensus_2224#0      ACGTGGAGAATAATTACTTCACCGTGATGGAGAGGGGCAAATATCTTTTCTTCGCTGGGT 837
consensus_2224#1      ------------------------------------------------------------
                                                                                  

consensus_2224#0      TGCGTTTCTNNCNNNNNNAAAAATAAAAAAAAAAAAAAAAAAGCGCGCCCTCTCCTCCTA 897
consensus_2224#1      ------------------------------------------------------------
                                                                                  

consensus_2224#0      TC 899
consensus_2224#1      --