These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2226#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 875 fasta sequence [TTTAATTACGCCATCTGTATCAACACCATCTTTTCTTCATAGAACAGCCTTCCCTTTTCGAAATCTTATCCTACCATTGACCATTTTGATCAAGCTTCGCGTCGATTCTAACAGACAAAATGAGGACTACTCTTCTTCGACCCCTCGTTCCCCGCCAGAACATCTTCTCTTCCTCCATCCCCAGAACTTCTTTTGTTAAACCGAACTTCGTTGCTACACCGAAATCTCCCATCAACAACACCACCCGAGTTCGCTTCTATTCCTCCACCATGTCTAAGCCTAACGTTNTCTTCGACATATTCTTCAACGGCGTGACCAAACGCCGTCGAGTCAACCTCTACGATGATGTAGGTCCCAAGACCGCCGACAACTNCATGCGTCTTTGCGTTTGCGAGCCCCCGCGTNGAGGCTACAAGGACTCTGCTTTCACCGATCATCCCGACTCATGCTCCGGGGGTGACTACACCGTGCACCGACCCGTTGCAGTCGTCTCGGCAGGAGTTGCTGCAGGAACTCTATCAGCAACCAGCCTGATTCTTGCATGCCAACGCGGCCCACCACAACGGTGCGATTTAATACCATGCAAGACCATGGTGACGGAAGCACTCCTTTTGCAAGGTAGTCGTTTAAGATGATTAACCAATGAGGTTGGTTGCCCCGGCCCACACAACAGACCANTAAACCGGGCCATAATAGCTTTGGGAGAGTTTGTCTATGGGCCTCTCGAGGGGTATATATTCGTTCTGTGTAGGAAAGCGGTGGGAGAAGGAACAGAGCCTCTTTCTCTACACACTGTGGTGAAAAAAAAAAAAAAGAGGNNNNNNNANNNNGGGGGGNTTTTNTTGCGTGAGGTTTTTAAGGCCCGGGGGGTGGCC] [+] EMBL AW155373 [TTTAATTACGCCATCTGTATCAACACCATCTTTTCTTCATAGAACAGCCTTCCCTTTTCGAAATCTTATCCTACCATTGACCATTTTGATCAAGCTTCGCGTCGATTCTAACAGACAAAATGAGGACTACTCTTCTTCGACCCCTCGTTCCCCGCCAGAACATCTTCTCTTCCTCCATCCCCAGAACTTCTTTTGTTAAACCGAACTTCGTTGCTACACCGAAATCTCCCATCAACAACACCACCCGAGTTCGCTTCTATTCCTCCACCATGTCTAAGCCTAACGTTNTCTTCGACATATTCTTCAACGGCGTGACCAAACGCCGTCGAGTCAACCTCTACGATGATGTAGGTCCCAAGACCGCCGACAACTNCATGCGTCTTTGCGTTTGCGAGCCCCCGCGTNGAGGCTACAAGGACTCTGCTTTCACCGATCATCCCGACTCATGCTCCGGGGGTGACTACACCGTGCACCGACCCGTTGCAGTCGTCTCGGCAGGAGTTGCTGCAGGAACTCTATCAGCAACCAGCCTGATTCTTGCATGCCAACGCGGCCCACCACAACGGTGCGATTTAATACCATGCAAGACCATGGTGACGGAAGCACTCCTTTTGCAAGGTAGTCGTTTAAGATGATTAACCAATGAGGTTGGTTGCCCCGGCCCACACAACAGACCANTAAACCGGGCCATAATAGCTTTGGGAGAGTTTGTCTATGGGCCTCTCGAGGGGTATATATTCGTTCTGTGTAGGAAAGCGGTGGGAGAAGGAACAGAGCCTCTTTCTCTACACACTGTGGTGAAAAAAAAAAAAAAGAGGNNNNNNNANNNNGGGGGGNTTTTNTTGCGTGAGGTTTTTAAGGCCCGGGGGGTGGCC] consensusID : consensus_2226#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 861 fasta sequence [TTTAATTACGCCATCTGTATCAACACCATCTTTTCTTCATAGAACAGCCTTCCCGTTTCGAAATCTTATCCTACCATTGACCATTTTGATCAAGCTTCGCGTCGATTCTAACAGACAAAATGAGGACTACTCTTCTTCGACCCCTCGTTCCCCGCCAGAACATCTTCTCTTCCTCCATCCCCAGAACTTCTTTTGTTAAACCGAACTTCGTTGCTACACCGAAATCTCCCATCAACAACACCACCCGAGTTCGCTTCTATTCCTCCACCATGTCTAAGCCTAACGTTTTCTTCGACATTATCTTCAACGGCGTGACCAAGCGCGTCGAGTTCAAGCTCTACGATGATGTAGTCCCCAAGACCGCCGACAACTTCATGCGTCTTTGCGTTGGCGAGCCCGGCGTTGGAGGCTACAAGGACTCTGGCTTTCACCGATCATCCTCGACTTCATGCTGCAGAGCGGTGACTTCACCCGTCGCAACAGCAGCCGGTGGCAAGNCGTCTACTGCGAGAAGATTTGCGACGAGACTACCAGATATGCACACCAGGCCTGGAGTACTGTCATGGTCGACGCGGCCCCACACAACAGGTGGCAGTGTCATCACACTGTGAGACTAATGGTGGACGCAGGCACCGCTCTTTGTAGGAGTCTCCGCTTAAGAGGATAAACCATGAGGTCTGTTCTCACGGGCCCACACAAGGGCATTGGACGTGGCCCGTAATGGCTTTGTGGAAGTTTTGTCTCTGGGGCGCTCTCGAGGGGGGTGGGAAATTTTTCTTGTATGAGAAACCGGGGGGGAAGGGGAAAAATAGATTATTTTTCTCTCTAATCTCTGTGGTCTTAGGAAGATATAAAAAAATA] [+] EMBL AW155439 [TTTAATTACGCCATCTGTATCAACACCATCTTTTCTTCATAGAACAGCCTTCCCGTTTCGAAATCTTATCCTACCATTGACCATTTTGATCAAGCTTCGCGTCGATTCTAACAGACAAAATGAGGACTACTCTTCTTCGACCCCTCGTTCCCCGCCAGAACATCTTCTCTTCCTCCATCCCCAGAACTTCTTTTGTTAAACCGAACTTCGTTGCTACACCGAAATCTCCCATCAACAACACCACCCGAGTTCGCTTCTATTCCTCCACCATGTCTAAGCCTAACGTTTTCTTCGACATTATCTTCAACGGCGTGACCAAGCGCGTCGAGTTCAAGCTCTACGATGATGTAGTCCCCAAGACCGCCGACAACTTCATGCGTCTTTGCGTTGGCGAGCCCGGCGTTGGAGGCTACAAGGACTCTGGCTTTCACCGATCATCCTCGACTTCATGCTGCAGAGCGGTGACTTCACCCGTCGCAACAGCAGCCGGTGGCAAGNCGTCTACTGCGAGAAGATTTGCGACGAGACTACCAGATATGCACACCAGGCCTGGAGTACTGTCATGGTCGACGCGGCCCCACACAACAGGTGGCAGTGTCATCACACTGTGAGACTAATGGTGGACGCAGGCACCGCTCTTTGTAGGAGTCTCCGCTTAAGAGGATAAACCATGAGGTCTGTTCTCACGGGCCCACACAAGGGCATTGGACGTGGCCCGTAATGGCTTTGTGGAAGTTTTGTCTCTGGGGCGCTCTCGAGGGGGGTGGGAAATTTTTCTTGTATGAGAAACCGGGGGGGAAGGGGAAAAATAGATTATTTTTCTCTCTAATCTCTGTGGTCTTAGGAAGATATAAAAAAATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2226#0 TTTAATTACGCCATCTGTATCAACACCATCTTTTCTTCATAGAACAGCCTTCCCTTTTCG 60 consensus_2226#1 TTTAATTACGCCATCTGTATCAACACCATCTTTTCTTCATAGAACAGCCTTCCCGTTTCG 60 ****************************************************** ***** consensus_2226#0 AAATCTTATCCTACCATTGACCATTTTGATCAAGCTTCGCGTCGATTCTAACAGACAAAA 120 consensus_2226#1 AAATCTTATCCTACCATTGACCATTTTGATCAAGCTTCGCGTCGATTCTAACAGACAAAA 120 ************************************************************ consensus_2226#0 TGAGGACTACTCTTCTTCGACCCCTCGTTCCCCGCCAGAACATCTTCTCTTCCTCCATCC 180 consensus_2226#1 TGAGGACTACTCTTCTTCGACCCCTCGTTCCCCGCCAGAACATCTTCTCTTCCTCCATCC 180 ************************************************************ consensus_2226#0 CCAGAACTTCTTTTGTTAAACCGAACTTCGTTGCTACACCGAAATCTCCCATCAACAACA 240 consensus_2226#1 CCAGAACTTCTTTTGTTAAACCGAACTTCGTTGCTACACCGAAATCTCCCATCAACAACA 240 ************************************************************ consensus_2226#0 CCACCCGAGTTCGCTTCTATTCCTCCACCATGTCTAAGCCTAACGTTNTCTTCGACATAT 300 consensus_2226#1 CCACCCGAGTTCGCTTCTATTCCTCCACCATGTCTAAGCCTAACGTTTTCTTCGACATTA 300 *********************************************** ********** consensus_2226#0 TCTTCAACGGCGTGACCAAACGCCGTCGAGT-CAACCTCTACGATGATGTAGGTCCCAAG 359 consensus_2226#1 TCTTCAACGGCGTGACCAAGCGC-GTCGAGTTCAAGCTCTACGATGATGTAGTCCCCAAG 359 ******************* *** ******* *** **************** ****** consensus_2226#0 ACCGCCGACAACTNCATGCGTCTTTGCGTTTGCGAGCCCCCGCGTNGAGGCTACAAGGAC 419 consensus_2226#1 ACCGCCGACAACTTCATGCGTCTTTGCGTTGGCGAGCCCGGCGTTGGAGGCTACAAGGAC 419 ************* **************** ******** * ************** consensus_2226#0 TCTG-CTTTCACCGATCATCC-CGACT-CATGCTCCGGGG--GTGACTACACC-GT---- 469 consensus_2226#1 TCTGGCTTTCACCGATCATCCTCGACTTCATGCTGCAGAGCGGTGACTTCACCCGTCGCA 479 **** **************** ***** ****** * * * ****** **** ** consensus_2226#0 GCACCGACCCGTTGCA-GTCGTCT----CGGCAGGAGTTGCTGCAGGAACTC----TATC 520 consensus_2226#1 ACAGCAGCCGGTGGCAAGNCGTCTACTGCGAGAAGATTTGCGACGAGACTACCAGATATG 539 ** * ** ** *** * ***** ** * ** **** * ** * *** consensus_2226#0 AGCAACCAGCCTGA--TTCTTGCATG-CCAACGCGGCCCACCACAACGGT--GCGATTTA 575 consensus_2226#1 CACACCAGGCCTGGAGTACTGTCATGGTCGACGCGGCCCCACACAACAGGTGGCAGTGTC 599 ** * ***** * ** **** * ********* ****** * ** * * consensus_2226#0 ATACCA-TGCAAGACCA-TGGTG-ACGGAAGCACTCCT-TTTGCAAG-GTAGTCGTTTAA 630 consensus_2226#1 ATCACACTGTGAGACTAATGGTGGACGCAGGCACCGCTCTTTGTAGGAGTCTCCGCTTAA 659 ** ** ** **** * ***** *** * **** ** **** * * ** ** **** consensus_2226#0 GATGATTAACCAATGAGGTTGGTTGCCCCGGCCCACACAACAGACCANTAAAC-CGGGCC 689 consensus_2226#1 GAGGATAAACCA-TGAGGTCTGTTCTCACGGGCC-CACACAAGGGCATTGGACGTGGCCC 717 ** *** ***** ****** *** * *** ** **** ** ** * ** ** ** consensus_2226#0 ATAATAGCTTTGGGAGAGTTT-GTCTATGGGCC--TCTCGAGGGGTAT---ATATTCGTT 743 consensus_2226#1 GTAATGGCTTTGTGGAAGTTTTGTCTCTGGGGCGCTCTCGAGGGGGGTGGGAAATTTTTC 777 **** ****** * ***** **** **** * ********** * * *** * consensus_2226#0 CTGTGTAGGAAAGCGGTGGGAGAAGGAACAGA------GCCTCTTTCTCTACACACTGTG 797 consensus_2226#1 TTGTATGAGAAACCGGGGGGGAAGGGGAAAAATAGATTATTTTTCTCTCTAATCTCTGTG 837 *** * **** *** *** * ** * * * * * ****** * ***** consensus_2226#0 GTGAAAAAAAAAAAAAAGAGGNNNNNNNANNNNGGGGGGNTTTTNTTGCGTGAGGTTTTT 857 consensus_2226#1 GTCTTAGGAAGATATAAAAAAATA------------------------------------ 861 ** * ** * * ** * consensus_2226#0 AAGGCCCGGGGGGTGGCC 875 consensus_2226#1 ------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||