cluster # 2232

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Oryza sativa
cluster # 2232 cluster # 2232 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2232#0 length = 418 sequences # 1

consensus_2232#1 length = 331 sequences # 1

consensusID : consensus_2232#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 418
fasta sequence

                              [TTTGGGACGGATGAAATAATGTGTTTTTTAGAGAAAAGAATCGAGCGTCAGTATGCTTCGCTGACAAGGGGATGGCCCACGTGTCAGTGAATCGAGGAGTATGGTACCACGTGATAGATATACTGATATACATATATAGAGGCGTATGAGAAGAGAGAAGTAAAAAAATACAATAAATACTGGAAACATTATTGTAAATATACACTTTGTTTTATTCTTTTTATATTTCTTGTTTGGTCATGGATTTGTTTCATTTTTGTAAAATGTAGAACGGTGCTATGTGATGTGTAGTTTCCCATAGTTTGTAATGTTGAACTACTGGATGGTTGAAGCTGTTGTATTTTGTCCCACTTTCACATGAAGCCTGGTTAAATAATAAATAAAGAAAAGGGTAACAAACATTTTTCATGCCAAAAAA]

[+] EMBL BI811979             [TTTGGGACGGATGAAATAATGTGTTTTTTAGAGAAAAGAATCGAGCGTCAGTATGCTTCGCTGACAAGGGGATGGCCCACGTGTCAGTGAATCGAGGAGTATGGTACCACGTGATAGATATACTGATATACATATATAGAGGCGTATGAGAAGAGAGAAGTAAAAAAATACAATAAATACTGGAAACATTATTGTAAATATACACTTTGTTTTATTCTTTTTATATTTCTTGTTTGGTCATGGATTTGTTTCATTTTTGTAAAATGTAGAACGGTGCTATGTGATGTGTAGTTTCCCATAGTTTGTAATGTTGAACTACTGGATGGTTGAAGCTGTTGTATTTTGTCCCACTTTCACATGAAGCCTGGTTAAATAATAAATAAAGAAAAGGGTAACAAACATTTTTCATGCCAAAAAA]




>consensus_2232#0
TTTGGGACGGATGAAATAATGTGTTTTTTAGAGAAAAGAATCGAGCGTCAGTATGCTTCG
CTGACAAGGGGATGGCCCACGTGTCAGTGAATCGAGGAGTATGGTACCACGTGATAGATA
TACTGATATACATATATAGAGGCGTATGAGAAGAGAGAAGTAAAAAAATACAATAAATAC
TGGAAACATTATTGTAAATATACACTTTGTTTTATTCTTTTTATATTTCTTGTTTGGTCA
TGGATTTGTTTCATTTTTGTAAAATGTAGAACGGTGCTATGTGATGTGTAGTTTCCCATA
GTTTGTAATGTTGAACTACTGGATGGTTGAAGCTGTTGTATTTTGTCCCACTTTCACATG
AAGCCTGGTTAAATAATAAATAAAGAAAAGGGTAACAAACATTTTTCATGCCAAAAAA

consensusID : consensus_2232#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 331
fasta sequence

                              [CATGTCAGTGAATCGAGGAGTATGGTACCNGTAGTAGATATACTGATATACATGTAGAGAGGCGTATGAGAAGAGAGAAGTAAAAAAATATAATAAATACTGGAAACATTATTGTAAATATACACTTTGTTTTATTCTTTTTATATTTCTTGTTTGGTTGTGGATTTGTTTTAATTTTTGTAAAATGTAGAACGGTGCTATGTGATGTATAGTTTCCCACTTTCCCATAGTTTGTAATGTTGAACTACTGAATGGTTGAAGCTGCTGTATTTTGTCCAACTTTCACATGAGGCCTGGTTAAATAATAAATAAAGAAAAAGGTAACAGAACA]

[+] EMBL CA764727             [CATGTCAGTGAATCGAGGAGTATGGTACCNGTAGTAGATATACTGATATACATGTAGAGAGGCGTATGAGAAGAGAGAAGTAAAAAAATATAATAAATACTGGAAACATTATTGTAAATATACACTTTGTTTTATTCTTTTTATATTTCTTGTTTGGTTGTGGATTTGTTTTAATTTTTGTAAAATGTAGAACGGTGCTATGTGATGTATAGTTTCCCACTTTCCCATAGTTTGTAATGTTGAACTACTGAATGGTTGAAGCTGCTGTATTTTGTCCAACTTTCACATGAGGCCTGGTTAAATAATAAATAAAGAAAAAGGTAACAGAACA]




>consensus_2232#1
CATGTCAGTGAATCGAGGAGTATGGTACCNGTAGTAGATATACTGATATACATGTAGAGA
GGCGTATGAGAAGAGAGAAGTAAAAAAATATAATAAATACTGGAAACATTATTGTAAATA
TACACTTTGTTTTATTCTTTTTATATTTCTTGTTTGGTTGTGGATTTGTTTTAATTTTTG
TAAAATGTAGAACGGTGCTATGTGATGTATAGTTTCCCACTTTCCCATAGTTTGTAATGT
TGAACTACTGAATGGTTGAAGCTGCTGTATTTTGTCCAACTTTCACATGAGGCCTGGTTA
AATAATAAATAAAGAAAAAGGTAACAGAACA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2232#0      TTTGGGACGGATGAAATAATGTGTTTTTTAGAGAAAAGAATCGAGCGTCAGTATGCTTCG 60
consensus_2232#1      ------------------------------------------------------------
                                                                                  

consensus_2232#0      CTGACAAGGGGATGGCCCACGTGTCAGTGAATCGAGGAGTATGGTACCACGTGATAGATA 120
consensus_2232#1      -------------------CATGTCAGTGAATCGAGGAGTATGGTACCN-GTAGTAGATA 40
                                         * ***************************  **  ******

consensus_2232#0      TACTGATATACATATATAGAGGCGTATGAGAAGAGAGAAGTAAAAAAATACAATAAATAC 180
consensus_2232#1      TACTGATATACATGTAGAGAGGCGTATGAGAAGAGAGAAGTAAAAAAATATAATAAATAC 100
                      ************* ** ********************************* *********

consensus_2232#0      TGGAAACATTATTGTAAATATACACTTTGTTTTATTCTTTTTATATTTCTTGTTTGGTCA 240
consensus_2232#1      TGGAAACATTATTGTAAATATACACTTTGTTTTATTCTTTTTATATTTCTTGTTTGGTTG 160
                      **********************************************************  

consensus_2232#0      TGGATTTGTTTCA-TTTTTGTAAAATGTAGAACGGTGCTATGTGATGTGTAGTTTCCCA- 298
consensus_2232#1      TGGATTTGTTTTAATTTTTGTAAAATGTAGAACGGTGCTATGTGATGTATAGTTTCCCAC 220
                      *********** * ********************************** ********** 

consensus_2232#0      -------TAGTTTGTAATGTTGAACTACTGGATGGTTGAAGCTGTTGTATTTTGTCCCAC 351
consensus_2232#1      TTTCCCATAGTTTGTAATGTTGAACTACTGAATGGTTGAAGCTGCTGTATTTTGTCCAAC 280
                             *********************** ************* ************ **

consensus_2232#0      TTTCACATGAAGCCTGGTTAAATAATAAATAAAGAAAAGGGTAACA-AACATTTTTCATG 410
consensus_2232#1      TTTCACATGAGGCCTGGTTAAATAATAAATAAAGAAAAAGGTAACAGAACA--------- 331
                      ********** *************************** ******* ****         

consensus_2232#0      CCAAAAAA 418
consensus_2232#1      --------