These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2246#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 497 fasta sequence [CGCCGCCGCGGAGGCCCCTCGCCATCGCCGCCCCCCAGCTCCCGCTTCTCCCCCGCGCGCGCGGCACGGCTTCGGCCTCAGCCGCCGCCGCCGCCGCCGCCTCCTCTACCGACTCAGATGCTTGTGCCAAGATCATTGATGGGAAGTTGGTGGCAAAGCAGATAAGAGAGGAAATCGCTGTTGAGATCGCCAAGATGAAGGATGCAATTGGGGTTGTGCCTGGGCTGGCAGTCATCCTAGTTGGGTCAAGGAAGGATTCTCAAACGTATGTGCGCAACAAGAAGAAGGCATGCGAAGCGGTTGGTATCAAGTCATATGAGGTTAATTTGCCGGAAGACAGCTCTGAGGATGAGGTTCTCAAGCACATCGCAACATTTAACAGTGATCCGTCGGTGCATGGCATCTTGGTTCAGTTGCCCCTACCTCATCATATGAATGATGAGAACATTTTGAATGCTGTTAGTATTGAGAAGGATGTTGATGGATTTCATCCACTG] [+] EMBL BP184756 [CGCCGCCGCGGAGGCCCCTCGCCATCGCCGCCCCCCAGCTCCCGCTTCTCCCCCGCGCGCGCGGCACGGCTTCGGCCTCAGCCGCCGCCGCCGCCGCCGCCTCCTCTACCGACTCAGATGCTTGTGCCAAGATCATTGATGGGAAGTTGGTGGCAAAGCAGATAAGAGAGGAAATCGCTGTTGAGATCGCCAAGATGAAGGATGCAATTGGGGTTGTGCCTGGGCTGGCAGTCATCCTAGTTGGGTCAAGGAAGGATTCTCAAACGTATGTGCGCAACAAGAAGAAGGCATGCGAAGCGGTTGGTATCAAGTCATATGAGGTTAATTTGCCGGAAGACAGCTCTGAGGATGAGGTTCTCAAGCACATCGCAACATTTAACAGTGATCCGTCGGTGCATGGCATCTTGGTTCAGTTGCCCCTACCTCATCATATGAATGATGAGAACATTTTGAATGCTGTTAGTATTGAGAAGGATGTTGATGGATTTCATCCACTG] consensusID : consensus_2246#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 188 fasta sequence [AGATCAACAATAGCACTGGGTCCAAGGAAGGTATCTATGCAAACAGTCTATGCGCTAACAAGACGAAGGCATGCGAACGGTGTTGGTATCAAGTCATATGAGGTTAATTTGCCGGAAGACAGCTCTGAGGATGAGGTTCTCAAGCACATCGCAACATTTAACAGTGATCCGTCGGTGCATGGCATCTT] [+] EMBL OS38044 [AGATCAACAATAGCACTGGGTCCAAGGAAGGTATCTATGCAAACAGTCTATGCGCTAACAAGACGAAGGCATGCGAACGGTGTTGGTATCAAGTCATATGAGGTTAATTTGCCGGAAGACAGCTCTGAGGATGAGGTTCTCAAGCACATCGCAACATTTAACAGTGATCCGTCGGTGCATGGCATCTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2246#0 CGCCGCCGCGGAGGCCCCTCGCCATCGCCGCCCCCCAGCTCCCGCTTCTCCCCCGCGCGC 60 consensus_2246#1 ------------------------------------------------------------ consensus_2246#0 GCGGCACGGCTTCGGCCTCAGCCGCCGCCGCCGCCGCCGCCTCCTCTACCGACTCAGATG 120 consensus_2246#1 ------------------------------------------------------------ consensus_2246#0 CTTGTGCCAAGATCATTGATGGGAAGTTGGTGGCAAAGCAGATAAGAGAGGAAATCGCTG 180 consensus_2246#1 ------------------------------------------------------------ consensus_2246#0 TTGAGATCGCCAAGATGAAGGATGCAATTGGGGTTGTGCCTGGGCTGGCAGTCATCCTAG 240 consensus_2246#1 -----------------------------------------AGATCAACAATAGCACTGG 19 * ** * ** * consensus_2246#0 TTGGGTCAAGGAAGGATTCT---CAAAC-GTATGTGCGC-AACAAGAAGAAGGCATGCGA 295 consensus_2246#1 ---GTCCAAGGAAGGTATCTATGCAAACAGTCTATGCGCTAACAAGACGAAGGCATGCGA 76 * ********* *** ***** ** * ***** ******* ************ consensus_2246#0 AGCG-GTTGGTATCAAGTCATATGAGGTTAATTTGCCGGAAGACAGCTCTGAGGATGAGG 354 consensus_2246#1 ACGGTGTTGGTATCAAGTCATATGAGGTTAATTTGCCGGAAGACAGCTCTGAGGATGAGG 136 * * ******************************************************* consensus_2246#0 TTCTCAAGCACATCGCAACATTTAACAGTGATCCGTCGGTGCATGGCATCTTGGTTCAGT 414 consensus_2246#1 TTCTCAAGCACATCGCAACATTTAACAGTGATCCGTCGGTGCATGGCATCTT-------- 188 **************************************************** consensus_2246#0 TGCCCCTACCTCATCATATGAATGATGAGAACATTTTGAATGCTGTTAGTATTGAGAAGG 474 consensus_2246#1 ------------------------------------------------------------ consensus_2246#0 ATGTTGATGGATTTCATCCACTG 497 consensus_2246#1 ----------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||