cluster # 2246

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Oryza sativa
cluster # 2246 cluster # 2246 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2246#0 length = 497 sequences # 1

consensus_2246#1 length = 188 sequences # 1

consensusID : consensus_2246#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 497
fasta sequence

                              [CGCCGCCGCGGAGGCCCCTCGCCATCGCCGCCCCCCAGCTCCCGCTTCTCCCCCGCGCGCGCGGCACGGCTTCGGCCTCAGCCGCCGCCGCCGCCGCCGCCTCCTCTACCGACTCAGATGCTTGTGCCAAGATCATTGATGGGAAGTTGGTGGCAAAGCAGATAAGAGAGGAAATCGCTGTTGAGATCGCCAAGATGAAGGATGCAATTGGGGTTGTGCCTGGGCTGGCAGTCATCCTAGTTGGGTCAAGGAAGGATTCTCAAACGTATGTGCGCAACAAGAAGAAGGCATGCGAAGCGGTTGGTATCAAGTCATATGAGGTTAATTTGCCGGAAGACAGCTCTGAGGATGAGGTTCTCAAGCACATCGCAACATTTAACAGTGATCCGTCGGTGCATGGCATCTTGGTTCAGTTGCCCCTACCTCATCATATGAATGATGAGAACATTTTGAATGCTGTTAGTATTGAGAAGGATGTTGATGGATTTCATCCACTG]

[+] EMBL BP184756             [CGCCGCCGCGGAGGCCCCTCGCCATCGCCGCCCCCCAGCTCCCGCTTCTCCCCCGCGCGCGCGGCACGGCTTCGGCCTCAGCCGCCGCCGCCGCCGCCGCCTCCTCTACCGACTCAGATGCTTGTGCCAAGATCATTGATGGGAAGTTGGTGGCAAAGCAGATAAGAGAGGAAATCGCTGTTGAGATCGCCAAGATGAAGGATGCAATTGGGGTTGTGCCTGGGCTGGCAGTCATCCTAGTTGGGTCAAGGAAGGATTCTCAAACGTATGTGCGCAACAAGAAGAAGGCATGCGAAGCGGTTGGTATCAAGTCATATGAGGTTAATTTGCCGGAAGACAGCTCTGAGGATGAGGTTCTCAAGCACATCGCAACATTTAACAGTGATCCGTCGGTGCATGGCATCTTGGTTCAGTTGCCCCTACCTCATCATATGAATGATGAGAACATTTTGAATGCTGTTAGTATTGAGAAGGATGTTGATGGATTTCATCCACTG]




>consensus_2246#0
CGCCGCCGCGGAGGCCCCTCGCCATCGCCGCCCCCCAGCTCCCGCTTCTCCCCCGCGCGC
GCGGCACGGCTTCGGCCTCAGCCGCCGCCGCCGCCGCCGCCTCCTCTACCGACTCAGATG
CTTGTGCCAAGATCATTGATGGGAAGTTGGTGGCAAAGCAGATAAGAGAGGAAATCGCTG
TTGAGATCGCCAAGATGAAGGATGCAATTGGGGTTGTGCCTGGGCTGGCAGTCATCCTAG
TTGGGTCAAGGAAGGATTCTCAAACGTATGTGCGCAACAAGAAGAAGGCATGCGAAGCGG
TTGGTATCAAGTCATATGAGGTTAATTTGCCGGAAGACAGCTCTGAGGATGAGGTTCTCA
AGCACATCGCAACATTTAACAGTGATCCGTCGGTGCATGGCATCTTGGTTCAGTTGCCCC
TACCTCATCATATGAATGATGAGAACATTTTGAATGCTGTTAGTATTGAGAAGGATGTTG
ATGGATTTCATCCACTG

consensusID : consensus_2246#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 188
fasta sequence

                              [AGATCAACAATAGCACTGGGTCCAAGGAAGGTATCTATGCAAACAGTCTATGCGCTAACAAGACGAAGGCATGCGAACGGTGTTGGTATCAAGTCATATGAGGTTAATTTGCCGGAAGACAGCTCTGAGGATGAGGTTCTCAAGCACATCGCAACATTTAACAGTGATCCGTCGGTGCATGGCATCTT]

[+] EMBL OS38044              [AGATCAACAATAGCACTGGGTCCAAGGAAGGTATCTATGCAAACAGTCTATGCGCTAACAAGACGAAGGCATGCGAACGGTGTTGGTATCAAGTCATATGAGGTTAATTTGCCGGAAGACAGCTCTGAGGATGAGGTTCTCAAGCACATCGCAACATTTAACAGTGATCCGTCGGTGCATGGCATCTT]




>consensus_2246#1
AGATCAACAATAGCACTGGGTCCAAGGAAGGTATCTATGCAAACAGTCTATGCGCTAACA
AGACGAAGGCATGCGAACGGTGTTGGTATCAAGTCATATGAGGTTAATTTGCCGGAAGAC
AGCTCTGAGGATGAGGTTCTCAAGCACATCGCAACATTTAACAGTGATCCGTCGGTGCAT
GGCATCTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2246#0      CGCCGCCGCGGAGGCCCCTCGCCATCGCCGCCCCCCAGCTCCCGCTTCTCCCCCGCGCGC 60
consensus_2246#1      ------------------------------------------------------------
                                                                                  

consensus_2246#0      GCGGCACGGCTTCGGCCTCAGCCGCCGCCGCCGCCGCCGCCTCCTCTACCGACTCAGATG 120
consensus_2246#1      ------------------------------------------------------------
                                                                                  

consensus_2246#0      CTTGTGCCAAGATCATTGATGGGAAGTTGGTGGCAAAGCAGATAAGAGAGGAAATCGCTG 180
consensus_2246#1      ------------------------------------------------------------
                                                                                  

consensus_2246#0      TTGAGATCGCCAAGATGAAGGATGCAATTGGGGTTGTGCCTGGGCTGGCAGTCATCCTAG 240
consensus_2246#1      -----------------------------------------AGATCAACAATAGCACTGG 19
                                                                *     ** *    ** *

consensus_2246#0      TTGGGTCAAGGAAGGATTCT---CAAAC-GTATGTGCGC-AACAAGAAGAAGGCATGCGA 295
consensus_2246#1      ---GTCCAAGGAAGGTATCTATGCAAACAGTCTATGCGCTAACAAGACGAAGGCATGCGA 76
                         *  *********  ***   ***** ** * ***** ******* ************

consensus_2246#0      AGCG-GTTGGTATCAAGTCATATGAGGTTAATTTGCCGGAAGACAGCTCTGAGGATGAGG 354
consensus_2246#1      ACGGTGTTGGTATCAAGTCATATGAGGTTAATTTGCCGGAAGACAGCTCTGAGGATGAGG 136
                      *  * *******************************************************

consensus_2246#0      TTCTCAAGCACATCGCAACATTTAACAGTGATCCGTCGGTGCATGGCATCTTGGTTCAGT 414
consensus_2246#1      TTCTCAAGCACATCGCAACATTTAACAGTGATCCGTCGGTGCATGGCATCTT-------- 188
                      ****************************************************        

consensus_2246#0      TGCCCCTACCTCATCATATGAATGATGAGAACATTTTGAATGCTGTTAGTATTGAGAAGG 474
consensus_2246#1      ------------------------------------------------------------
                                                                                  

consensus_2246#0      ATGTTGATGGATTTCATCCACTG 497
consensus_2246#1      -----------------------