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These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 2246 cluster # 2246       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2246#0 length = 497 sequences # 1  
consensus_2246#1 length = 188 sequences # 1  

consensusID : consensus_2246#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 497
fasta sequence
                              [CGCCGCCGCGGAGGCCCCTCGCCATCGCCGCCCCCCAGCTCCCGCTTCTCCCCCGCGCGCGCGGCACGGCTTCGGCCTCAGCCGCCGCCGCCGCCGCCGCCTCCTCTACCGACTCAGATGCTTGTGCCAAGATCATTGATGGGAAGTTGGTGGCAAAGCAGATAAGAGAGGAAATCGCTGTTGAGATCGCCAAGATGAAGGATGCAATTGGGGTTGTGCCTGGGCTGGCAGTCATCCTAGTTGGGTCAAGGAAGGATTCTCAAACGTATGTGCGCAACAAGAAGAAGGCATGCGAAGCGGTTGGTATCAAGTCATATGAGGTTAATTTGCCGGAAGACAGCTCTGAGGATGAGGTTCTCAAGCACATCGCAACATTTAACAGTGATCCGTCGGTGCATGGCATCTTGGTTCAGTTGCCCCTACCTCATCATATGAATGATGAGAACATTTTGAATGCTGTTAGTATTGAGAAGGATGTTGATGGATTTCATCCACTG]

[+] EMBL BP184756             [CGCCGCCGCGGAGGCCCCTCGCCATCGCCGCCCCCCAGCTCCCGCTTCTCCCCCGCGCGCGCGGCACGGCTTCGGCCTCAGCCGCCGCCGCCGCCGCCGCCTCCTCTACCGACTCAGATGCTTGTGCCAAGATCATTGATGGGAAGTTGGTGGCAAAGCAGATAAGAGAGGAAATCGCTGTTGAGATCGCCAAGATGAAGGATGCAATTGGGGTTGTGCCTGGGCTGGCAGTCATCCTAGTTGGGTCAAGGAAGGATTCTCAAACGTATGTGCGCAACAAGAAGAAGGCATGCGAAGCGGTTGGTATCAAGTCATATGAGGTTAATTTGCCGGAAGACAGCTCTGAGGATGAGGTTCTCAAGCACATCGCAACATTTAACAGTGATCCGTCGGTGCATGGCATCTTGGTTCAGTTGCCCCTACCTCATCATATGAATGATGAGAACATTTTGAATGCTGTTAGTATTGAGAAGGATGTTGATGGATTTCATCCACTG]


>consensus_2246#0 CGCCGCCGCGGAGGCCCCTCGCCATCGCCGCCCCCCAGCTCCCGCTTCTCCCCCGCGCGC GCGGCACGGCTTCGGCCTCAGCCGCCGCCGCCGCCGCCGCCTCCTCTACCGACTCAGATG CTTGTGCCAAGATCATTGATGGGAAGTTGGTGGCAAAGCAGATAAGAGAGGAAATCGCTG TTGAGATCGCCAAGATGAAGGATGCAATTGGGGTTGTGCCTGGGCTGGCAGTCATCCTAG TTGGGTCAAGGAAGGATTCTCAAACGTATGTGCGCAACAAGAAGAAGGCATGCGAAGCGG TTGGTATCAAGTCATATGAGGTTAATTTGCCGGAAGACAGCTCTGAGGATGAGGTTCTCA AGCACATCGCAACATTTAACAGTGATCCGTCGGTGCATGGCATCTTGGTTCAGTTGCCCC TACCTCATCATATGAATGATGAGAACATTTTGAATGCTGTTAGTATTGAGAAGGATGTTG ATGGATTTCATCCACTG



consensusID : consensus_2246#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 188
fasta sequence
                              [AGATCAACAATAGCACTGGGTCCAAGGAAGGTATCTATGCAAACAGTCTATGCGCTAACAAGACGAAGGCATGCGAACGGTGTTGGTATCAAGTCATATGAGGTTAATTTGCCGGAAGACAGCTCTGAGGATGAGGTTCTCAAGCACATCGCAACATTTAACAGTGATCCGTCGGTGCATGGCATCTT]

[+] EMBL OS38044              [AGATCAACAATAGCACTGGGTCCAAGGAAGGTATCTATGCAAACAGTCTATGCGCTAACAAGACGAAGGCATGCGAACGGTGTTGGTATCAAGTCATATGAGGTTAATTTGCCGGAAGACAGCTCTGAGGATGAGGTTCTCAAGCACATCGCAACATTTAACAGTGATCCGTCGGTGCATGGCATCTT]


>consensus_2246#1 AGATCAACAATAGCACTGGGTCCAAGGAAGGTATCTATGCAAACAGTCTATGCGCTAACA AGACGAAGGCATGCGAACGGTGTTGGTATCAAGTCATATGAGGTTAATTTGCCGGAAGAC AGCTCTGAGGATGAGGTTCTCAAGCACATCGCAACATTTAACAGTGATCCGTCGGTGCAT GGCATCTT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2246#0      CGCCGCCGCGGAGGCCCCTCGCCATCGCCGCCCCCCAGCTCCCGCTTCTCCCCCGCGCGC 60
consensus_2246#1      ------------------------------------------------------------
                                                                                  

consensus_2246#0      GCGGCACGGCTTCGGCCTCAGCCGCCGCCGCCGCCGCCGCCTCCTCTACCGACTCAGATG 120
consensus_2246#1      ------------------------------------------------------------
                                                                                  

consensus_2246#0      CTTGTGCCAAGATCATTGATGGGAAGTTGGTGGCAAAGCAGATAAGAGAGGAAATCGCTG 180
consensus_2246#1      ------------------------------------------------------------
                                                                                  

consensus_2246#0      TTGAGATCGCCAAGATGAAGGATGCAATTGGGGTTGTGCCTGGGCTGGCAGTCATCCTAG 240
consensus_2246#1      -----------------------------------------AGATCAACAATAGCACTGG 19
                                                                *     ** *    ** *

consensus_2246#0      TTGGGTCAAGGAAGGATTCT---CAAAC-GTATGTGCGC-AACAAGAAGAAGGCATGCGA 295
consensus_2246#1      ---GTCCAAGGAAGGTATCTATGCAAACAGTCTATGCGCTAACAAGACGAAGGCATGCGA 76
                         *  *********  ***   ***** ** * ***** ******* ************

consensus_2246#0      AGCG-GTTGGTATCAAGTCATATGAGGTTAATTTGCCGGAAGACAGCTCTGAGGATGAGG 354
consensus_2246#1      ACGGTGTTGGTATCAAGTCATATGAGGTTAATTTGCCGGAAGACAGCTCTGAGGATGAGG 136
                      *  * *******************************************************

consensus_2246#0      TTCTCAAGCACATCGCAACATTTAACAGTGATCCGTCGGTGCATGGCATCTTGGTTCAGT 414
consensus_2246#1      TTCTCAAGCACATCGCAACATTTAACAGTGATCCGTCGGTGCATGGCATCTT-------- 188
                      ****************************************************        

consensus_2246#0      TGCCCCTACCTCATCATATGAATGATGAGAACATTTTGAATGCTGTTAGTATTGAGAAGG 474
consensus_2246#1      ------------------------------------------------------------
                                                                                  

consensus_2246#0      ATGTTGATGGATTTCATCCACTG 497
consensus_2246#1      -----------------------
                                             




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)