cluster # 2257

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Oryza sativa
cluster # 2257 cluster # 2257 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2257#0 length = 259 sequences # 1

consensus_2257#1 length = 195 sequences # 1

consensusID : consensus_2257#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 259
fasta sequence

                              [TTATCATCAAGTACCATTCCCACCGAGTCTAAAAATGGCATCATTTCCATGTTAAGAATCACGGCGCGTTGAATCTACTATGTATTTTTTAATAAATACAGTGAGTACTTTAATGTCAAGGCCGAACGTTCAATATCTTTAAAGAAATACCCAACGTCTTTCTGAATAAGGTCAAAGCGGCTATCGGCACGTTTTACCGCGCGCTCCGATACCAGATGATAGGTAGTGATGAAAAAAAGACCTATAAATGACAGTGCTG]

[+] EMBL CF306202             [TTATCATCAAGTACCATTCCCACCGAGTCTAAAAATGGCATCATTTCCATGTTAAGAATCACGGCGCGTTGAATCTACTATGTATTTTTTAATAAATACAGTGAGTACTTTAATGTCAAGGCCGAACGTTCAATATCTTTAAAGAAATACCCAACGTCTTTCTGAATAAGGTCAAAGCGGCTATCGGCACGTTTTACCGCGCGCTCCGATACCAGATGATAGGTAGTGATGAAAAAAAGACCTATAAATGACAGTGCTG]




>consensus_2257#0
TTATCATCAAGTACCATTCCCACCGAGTCTAAAAATGGCATCATTTCCATGTTAAGAATC
ACGGCGCGTTGAATCTACTATGTATTTTTTAATAAATACAGTGAGTACTTTAATGTCAAG
GCCGAACGTTCAATATCTTTAAAGAAATACCCAACGTCTTTCTGAATAAGGTCAAAGCGG
CTATCGGCACGTTTTACCGCGCGCTCCGATACCAGATGATAGGTAGTGATGAAAAAAAGA
CCTATAAATGACAGTGCTG

consensusID : consensus_2257#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 195
fasta sequence

                              [CTCACTGTATTTATCAAAAAATGCAGAGGAGATTCAACGCGCCGAGAACCTTAGAATGGAAATGATGCCATTTTTAGACTCGGTGGGACTGGTACTAGATGATAATAAATATTATCTTTTTTCGCGGAAGGCCATAGATGAAATTAAAGCTAATCGTCACGAACAAGGAAATGGACCGCTTGTCGACGAGTCAGG]

[+] EMBL CF307512             [CTCACTGTATTTATCAAAAAATGCAGAGGAGATTCAACGCGCCGAGAACCTTAGAATGGAAATGATGCCATTTTTAGACTCGGTGGGACTGGTACTAGATGATAATAAATATTATCTTTTTTCGCGGAAGGCCATAGATGAAATTAAAGCTAATCGTCACGAACAAGGAAATGGACCGCTTGTCGACGAGTCAGG]




>consensus_2257#1
CTCACTGTATTTATCAAAAAATGCAGAGGAGATTCAACGCGCCGAGAACCTTAGAATGGA
AATGATGCCATTTTTAGACTCGGTGGGACTGGTACTAGATGATAATAAATATTATCTTTT
TTCGCGGAAGGCCATAGATGAAATTAAAGCTAATCGTCACGAACAAGGAAATGGACCGCT
TGTCGACGAGTCAGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2257#0      TTATCATCAAGTACCATTCCCACCGAGTCTAAAAATGGCATCATTTCCATGTTAAGAATC 60
consensus_2257#1      ------------------------------------CTCACTGTATTTATCAAAAAATGC 24
                                                            **   * *  **   ** *  *

consensus_2257#0      ACGGCGCGTTGAATCTACTATGTATTTTTTAATAAATACAGTGAGTACTTTAATGTCAAG 120
consensus_2257#1      AGAGGAGATTCAACGCGCCGAGAACCTTAGAATGGAAATGATGCCATTTTTAGACTC--G 82
                      *  *    ** **    *   * *  **  ***  * *   **     ****   **  *

consensus_2257#0      GCCGAACGTTCAATATCTTTAAAGAAATACCCAACGTCTTTCTGAATAAGGTCAAAGCGG 180
consensus_2257#1      GTGGGACTGGTACTAGATGATAATAAATATT--ATCTTTTTTCGCGGAAGGCCATAGATG 140
                      *  * **    * **  *   ** *****    *  * ***  *   **** ** **  *

consensus_2257#0      CTATCGGCACGTTTTACCGCGCGCTCCGATACCAGATGATAGGTAGTGATGAAAAAAAGA 240
consensus_2257#1      AAATTAAAGCTAATCGTCACGAACAAGGAAATGGACCGCTTGTCGACGAGTCAGG----- 195
                        **     *   *   * **  *   ** *      * * *     **   *       

consensus_2257#0      CCTATAAATGACAGTGCTG 259
consensus_2257#1      -------------------