These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2276#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 647 fasta sequence [TGGGCTGGGCCGAAGATCGGTAGCCTACCATGCCCTCGCGGTCGCGGACACGCGGCGGCGACGGCGACGGCGACGGCGACGGTTTGCCGGCGGGAGATTTGAAGCCGGGTGTCATCCGGAACCTGCCCACCTTTTCCCGCCTGCTAATCAACAAATGGCCTCCTGTGTTCCGCCAACGATTTTCTTATCCATTCAGGTAATCATCAGTTCATCATCCTATTCGCATTCCTTCTCTCCTTTGTTTTCTGTATCGACATTTTTTTCCCGCTTCCTCGTATGCAACTAGAAATCTCTGTAATTAATCCATTAAGTAGAAGTTCGCCAATACCAAACCTGCGATCGTACAAGTGAATGTAATGCAGTCTGCGCCACTGATCTATTTCGCCCGCCAACTGTTCGACGAAATGGCAAAGCCAAAGAGCTGAAAAGTTCGACAATATGTCTGAAAAGTTGATGTCAGTTGTTTCTTCCCTGAGACGGCCAAGATCTGGCGTAGGATAACTGAAGGCTGTTCCCTGAAGTTTTCTATGGATGTTTGTTTTCTACCAAGAGATGTTCTTTGAGCTGCTTTTAGAGGTGCTTTTGCTTAGTTTCGTTTTGTCTCCTGTTGTCTGTAATCTTTTGGGGTCTCAAACCTTGTGTTAGTC] [+] EMBL AK108959 [TGGGCTGGGCCGAAGATCGGTAGCCTACCATGCCCTCGCGGTCGCGGACACGCGGCGGCGACGGCGACGGCGACGGCGACGGTTTGCCGGCGGGAGATTTGAAGCCGGGTGTCATCCGGAACCTGCCCACCTTTTCCCGCCTGCTAATCAACAAATGGCCTCCTGTGTTCCGCCAACGATTTTCTTATCCATTCAGGTAATCATCAGTTCATCATCCTATTCGCATTCCTTCTCTCCTTTGTTTTCTGTATCGACATTTTTTTCCCGCTTCCTCGTATGCAACTAGAAATCTCTGTAATTAATCCATTAAGTAGAAGTTCGCCAATACCAAACCTGCGATCGTACAAGTGAATGTAATGCAGTCTGCGCCACTGATCTATTTCGCCCGCCAACTGTTCGACGAAATGGCAAAGCCAAAGAGCTGAAAAGTTCGACAATATGTCTGAAAAGTTGATGTCAGTTGTTTCTTCCCTGAGACGGCCAAGATCTGGCGTAGGATAACTGAAGGCTGTTCCCTGAAGTTTTCTATGGATGTTTGTTTTCTACCAAGAGATGTTCTTTGAGCTGCTTTTAGAGGTGCTTTTGCTTAGTTTCGTTTTGTCTCCTGTTGTCTGTAATCTTTTGGGGTCTCAAACCTTGTGTTAGTC] consensusID : consensus_2276#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 477 fasta sequence [ATGCCCTCGCGGTCGCGGACACGCGGCGGCGACGGCGACGGCGACGGCGACGGTTTGCCGGCGGGAGATTTGAAGCCGGGTGTCATCCGGAACCTGCCCACCTTTTCCCGCCTGCTAATCAACAAATGGCCTCCTGTGTTCCGCCAACGATTTTCTTATCCATTCAGGTGCTTCAGGACACACTGCACAGCGGACTTAGGGGTGAGGGAGGGCGCCGGCTAGCCACAGAAATCATGTGAATCAGGGCTGACAGTGGGAATATCCTGCAGGCAGGCTGCAGCTTGCAGCAGCAGAATTGCTTAGGAGAGCGATACAGTTTAGTCGGTACACACAGGGGTAGATTGGTGTAAGATAGCTTTCTGAATTCTGAAGCCCTCTACTTGATGGAAATAGTCATTATCTAAATGTTGGAAACTTTGAATGGTTCTAAAGTGTATTTGAGAAGTTGGATGATATATTTCTGAAACTAGTATCTTT] [+] EMBL AK063658 [ATGCCCTCGCGGTCGCGGACACGCGGCGGCGACGGCGACGGCGACGGCGACGGTTTGCCGGCGGGAGATTTGAAGCCGGGTGTCATCCGGAACCTGCCCACCTTTTCCCGCCTGCTAATCAACAAATGGCCTCCTGTGTTCCGCCAACGATTTTCTTATCCATTCAGGTGCTTCAGGACACACTGCACAGCGGACTTAGGGGTGAGGGAGGGCGCCGGCTAGCCACAGAAATCATGTGAATCAGGGCTGACAGTGGGAATATCCTGCAGGCAGGCTGCAGCTTGCAGCAGCAGAATTGCTTAGGAGAGCGATACAGTTTAGTCGGTACACACAGGGGTAGATTGGTGTAAGATAGCTTTCTGAATTCTGAAGCCCTCTACTTGATGGAAATAGTCATTATCTAAATGTTGGAAACTTTGAATGGTTCTAAAGTGTATTTGAGAAGTTGGATGATATATTTCTGAAACTAGTATCTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2276#0 TGGGCTGGGCCGAAGATCGGTAGCCTACCATGCCCTCGCGGTCGCGGACACGCGGCGGCG 60 consensus_2276#1 -----------------------------ATGCCCTCGCGGTCGCGGACACGCGGCGGCG 31 ******************************* consensus_2276#0 ACGGCGACGGCGACGGCGACGGTTTGCCGGCGGGAGATTTGAAGCCGGGTGTCATCCGGA 120 consensus_2276#1 ACGGCGACGGCGACGGCGACGGTTTGCCGGCGGGAGATTTGAAGCCGGGTGTCATCCGGA 91 ************************************************************ consensus_2276#0 ACCTGCCCACCTTTTCCCGCCTGCTAATCAACAAATGGCCTCCTGTGTTCCGCCAACGAT 180 consensus_2276#1 ACCTGCCCACCTTTTCCCGCCTGCTAATCAACAAATGGCCTCCTGTGTTCCGCCAACGAT 151 ************************************************************ consensus_2276#0 TTTCTTATCCATTCAGGTAATCATCAGTTCATCATCCTATTCGCATTCCTTCTCTCCTTT 240 consensus_2276#1 TTTCTTATCCATTCAGGTGCTTCAGGACACACTGCACAGCGGACTTAGGGGTGAGGGAGG 211 ****************** * ** * * * consensus_2276#0 GTTTTCTGTATCGACATTTTTTTCCCGCTTCCTCGTATGCAACTAGAAATCTCTGTAATT 300 consensus_2276#1 GCGCCGGCTAGCCACAGAAATCATGTGAATCAGGGCTGACAGTGGGAATATCCTGCAGGC 271 * ** * *** * * ** * ** *** *** * consensus_2276#0 AATCCATTAAGTAGAAGTTCGCCAATACCAAACCTGCGATCGTACAAGTGAATGTAATGC 360 consensus_2276#1 AG--------GCTGCAGCTTGC-AGCAGCAGAATTGC--TTAGGAGAGCGA-TACAGTTT 319 * * * ** * ** * * ** * *** * ** ** * * * consensus_2276#0 AGTCTGCGC-CACTGATCTATTTCGCCCGCCAACTGTTCGACGAAATGGCAAAGCCAAAG 419 consensus_2276#1 AGTCGGTACACACAGGGGTAGATTGGT-GTAAGATAGCTTTCTGAATTCTGAAGCCCTCT 378 **** * * *** * ** * * * * * * *** ***** consensus_2276#0 AGCTGAAAAGTTCGACAATATGTCTGAAAAGTTGATGTCAGTTGTTTCTTCCCTGAGACG 479 consensus_2276#1 ACTTGATGGAAATAGTCAT-TATCT-AAATGTTGGAAACTTTGAATGGTTCTAAAGTGTA 436 * *** ** * *** *** **** * * * *** consensus_2276#0 GCCAAGATCTGGCGTAGGATAA--CTGAAGGCTGTTCCCTGAAGTTTTCTATGGATGTTT 537 consensus_2276#1 TTTGAGAAGTTGGATGATATATTTCTGAAACTAGTATCTTT------------------- 477 *** * * * *** ***** ** * * consensus_2276#0 GTTTTCTACCAAGAGATGTTCTTTGAGCTGCTTTTAGAGGTGCTTTTGCTTAGTTTCGTT 597 consensus_2276#1 ------------------------------------------------------------ consensus_2276#0 TTGTCTCCTGTTGTCTGTAATCTTTTGGGGTCTCAAACCTTGTGTTAGTC 647 consensus_2276#1 -------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||