cluster # 2286

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Oryza sativa
cluster # 2286 cluster # 2286 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2286#0 length = 960 sequences # 1

consensus_2286#1 length = 477 sequences # 1

consensusID : consensus_2286#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 960
fasta sequence

                              [AGGCGACCTCGTCTAAACCCCCACGCTCCCATGGCCGCCGCCGCCGCGTACCCCACCGCCGCCACTCTCCCCCCGCGCCGCGCACCTCCGCCCTCTCTCCGGCCGTCGCCGCCGCTCTCGTGGTCCGCCTCCATCGCCCACCTCGCGCTCTCGCCGCCGCCCGTGCCCAGCAACCGCGCGTCCCTGGTGGTGCGCGCGGCGTGGACGCGGCGGTCGCGGAAGGAGGCGGAGGAGAGGCCCAACCGCAAGTCGTGGAAGCAGCGCACGGACATGTACATGCGGCCGTTCCTGCTCAACGTCTTCTTCTCCAAGCGCTTCGTCCACGCCAAGGTCGTGCACAGGGGCACCAGCAAGGTCATCTCCGTCGCCAGCACCAACGCCAAGGACCTCAGGACCACGCTGCCCTCCCTCGTCGACGACAACGCCTGCAGGACCATCGGCCGCCTCATCGCCGAGAGGTCCATGGACGCCGACGTCTTCGCCATGTCCTACGAGCCCAAGAAGAACGAGAGGATCGAGGGGAAGCTTGGCATCGTCATCGACACCATTAAGGAGCACGGCATTATATTTGTTTAGGCAAGTTCGGCTTACAACGTTGATTAAAATATGTTGCGAGGTTTATTGCATGGTAGCTATGTTCATCTGTTGGGTAGCTGAAGTCTGTTGTCCCACCATGTTCATCAAAAATTATGTCTGGAAGAAAGTGGGTGATTAAACAATTGGATAAATCAATTTAGCACAGCTACATATTAAAAGCAAAGGTAAGACCTCAGATTTGCACTGCCTATGGTGAATGGTCCTGCACTTAAGAAAGAGGATAGTAAAATGAGGCTCACATTCTTTACTGGTTCTCAAACTATGCTCCTTTCCTAAGTTCAATATTATCTTGTCATGCTTGCAGTGCACAGAAACCATCCTGATATGGATCTTCCCTGCATGAATACACAAATGAAAGTGTTT]

[+] EMBL AK072634             [AGGCGACCTCGTCTAAACCCCCACGCTCCCATGGCCGCCGCCGCCGCGTACCCCACCGCCGCCACTCTCCCCCCGCGCCGCGCACCTCCGCCCTCTCTCCGGCCGTCGCCGCCGCTCTCGTGGTCCGCCTCCATCGCCCACCTCGCGCTCTCGCCGCCGCCCGTGCCCAGCAACCGCGCGTCCCTGGTGGTGCGCGCGGCGTGGACGCGGCGGTCGCGGAAGGAGGCGGAGGAGAGGCCCAACCGCAAGTCGTGGAAGCAGCGCACGGACATGTACATGCGGCCGTTCCTGCTCAACGTCTTCTTCTCCAAGCGCTTCGTCCACGCCAAGGTCGTGCACAGGGGCACCAGCAAGGTCATCTCCGTCGCCAGCACCAACGCCAAGGACCTCAGGACCACGCTGCCCTCCCTCGTCGACGACAACGCCTGCAGGACCATCGGCCGCCTCATCGCCGAGAGGTCCATGGACGCCGACGTCTTCGCCATGTCCTACGAGCCCAAGAAGAACGAGAGGATCGAGGGGAAGCTTGGCATCGTCATCGACACCATTAAGGAGCACGGCATTATATTTGTTTAGGCAAGTTCGGCTTACAACGTTGATTAAAATATGTTGCGAGGTTTATTGCATGGTAGCTATGTTCATCTGTTGGGTAGCTGAAGTCTGTTGTCCCACCATGTTCATCAAAAATTATGTCTGGAAGAAAGTGGGTGATTAAACAATTGGATAAATCAATTTAGCACAGCTACATATTAAAAGCAAAGGTAAGACCTCAGATTTGCACTGCCTATGGTGAATGGTCCTGCACTTAAGAAAGAGGATAGTAAAATGAGGCTCACATTCTTTACTGGTTCTCAAACTATGCTCCTTTCCTAAGTTCAATATTATCTTGTCATGCTTGCAGTGCACAGAAACCATCCTGATATGGATCTTCCCTGCATGAATACACAAATGAAAGTGTTT]




>consensus_2286#0
AGGCGACCTCGTCTAAACCCCCACGCTCCCATGGCCGCCGCCGCCGCGTACCCCACCGCC
GCCACTCTCCCCCCGCGCCGCGCACCTCCGCCCTCTCTCCGGCCGTCGCCGCCGCTCTCG
TGGTCCGCCTCCATCGCCCACCTCGCGCTCTCGCCGCCGCCCGTGCCCAGCAACCGCGCG
TCCCTGGTGGTGCGCGCGGCGTGGACGCGGCGGTCGCGGAAGGAGGCGGAGGAGAGGCCC
AACCGCAAGTCGTGGAAGCAGCGCACGGACATGTACATGCGGCCGTTCCTGCTCAACGTC
TTCTTCTCCAAGCGCTTCGTCCACGCCAAGGTCGTGCACAGGGGCACCAGCAAGGTCATC
TCCGTCGCCAGCACCAACGCCAAGGACCTCAGGACCACGCTGCCCTCCCTCGTCGACGAC
AACGCCTGCAGGACCATCGGCCGCCTCATCGCCGAGAGGTCCATGGACGCCGACGTCTTC
GCCATGTCCTACGAGCCCAAGAAGAACGAGAGGATCGAGGGGAAGCTTGGCATCGTCATC
GACACCATTAAGGAGCACGGCATTATATTTGTTTAGGCAAGTTCGGCTTACAACGTTGAT
TAAAATATGTTGCGAGGTTTATTGCATGGTAGCTATGTTCATCTGTTGGGTAGCTGAAGT
CTGTTGTCCCACCATGTTCATCAAAAATTATGTCTGGAAGAAAGTGGGTGATTAAACAAT
TGGATAAATCAATTTAGCACAGCTACATATTAAAAGCAAAGGTAAGACCTCAGATTTGCA
CTGCCTATGGTGAATGGTCCTGCACTTAAGAAAGAGGATAGTAAAATGAGGCTCACATTC
TTTACTGGTTCTCAAACTATGCTCCTTTCCTAAGTTCAATATTATCTTGTCATGCTTGCA
GTGCACAGAAACCATCCTGATATGGATCTTCCCTGCATGAATACACAAATGAAAGTGTTT

consensusID : consensus_2286#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 477
fasta sequence

                              [CCCTCGTCGACGACAACGCCTGCAGGACCATCGGCCGCCTCATCGCCGAGAGGTCCATGGACGCCGACGTCTTCGCCATGTCCTACGAGCCCAAGAAGAACGAGAGGATCGAGGGGAAGCTTGGCATCGTCATCGACACCATTAAGGAGCACGGCATTATATTTGTTTAGGCAAGTTCAGCTTACAACGTTGATTAAAATATGTTGCGAGGTTTATTGCATGGTAGCTATGTTCATCTGTTGGGTAGCTGAAGTCTGTTGTCCCACCATGTTCATCAAAAATTATGTCTGGAAGAAAGTGGGTGATTAAACAATTGGATAAATCAATTTAGCACAGCTACATATTAAAAGCAAAGTGCACAGAAACCATCCTGATATGGATCTTCCCTGCATGAATACACAAATGAAAGTGTTTTTTTTTTCGCATTCATCTTGTATCCCTGGAAAATGAAGTAATCTAATTGAATGTGGCATGTCA]

[+] EMBL AK063776             [CCCTCGTCGACGACAACGCCTGCAGGACCATCGGCCGCCTCATCGCCGAGAGGTCCATGGACGCCGACGTCTTCGCCATGTCCTACGAGCCCAAGAAGAACGAGAGGATCGAGGGGAAGCTTGGCATCGTCATCGACACCATTAAGGAGCACGGCATTATATTTGTTTAGGCAAGTTCAGCTTACAACGTTGATTAAAATATGTTGCGAGGTTTATTGCATGGTAGCTATGTTCATCTGTTGGGTAGCTGAAGTCTGTTGTCCCACCATGTTCATCAAAAATTATGTCTGGAAGAAAGTGGGTGATTAAACAATTGGATAAATCAATTTAGCACAGCTACATATTAAAAGCAAAGTGCACAGAAACCATCCTGATATGGATCTTCCCTGCATGAATACACAAATGAAAGTGTTTTTTTTTTCGCATTCATCTTGTATCCCTGGAAAATGAAGTAATCTAATTGAATGTGGCATGTCA]




>consensus_2286#1
CCCTCGTCGACGACAACGCCTGCAGGACCATCGGCCGCCTCATCGCCGAGAGGTCCATGG
ACGCCGACGTCTTCGCCATGTCCTACGAGCCCAAGAAGAACGAGAGGATCGAGGGGAAGC
TTGGCATCGTCATCGACACCATTAAGGAGCACGGCATTATATTTGTTTAGGCAAGTTCAG
CTTACAACGTTGATTAAAATATGTTGCGAGGTTTATTGCATGGTAGCTATGTTCATCTGT
TGGGTAGCTGAAGTCTGTTGTCCCACCATGTTCATCAAAAATTATGTCTGGAAGAAAGTG
GGTGATTAAACAATTGGATAAATCAATTTAGCACAGCTACATATTAAAAGCAAAGTGCAC
AGAAACCATCCTGATATGGATCTTCCCTGCATGAATACACAAATGAAAGTGTTTTTTTTT
TCGCATTCATCTTGTATCCCTGGAAAATGAAGTAATCTAATTGAATGTGGCATGTCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2286#0      AGGCGACCTCGTCTAAACCCCCACGCTCCCATGGCCGCCGCCGCCGCGTACCCCACCGCC 60
consensus_2286#1      ------------------------------------------------------------
                                                                                  

consensus_2286#0      GCCACTCTCCCCCCGCGCCGCGCACCTCCGCCCTCTCTCCGGCCGTCGCCGCCGCTCTCG 120
consensus_2286#1      ------------------------------------------------------------
                                                                                  

consensus_2286#0      TGGTCCGCCTCCATCGCCCACCTCGCGCTCTCGCCGCCGCCCGTGCCCAGCAACCGCGCG 180
consensus_2286#1      ------------------------------------------------------------
                                                                                  

consensus_2286#0      TCCCTGGTGGTGCGCGCGGCGTGGACGCGGCGGTCGCGGAAGGAGGCGGAGGAGAGGCCC 240
consensus_2286#1      ------------------------------------------------------------
                                                                                  

consensus_2286#0      AACCGCAAGTCGTGGAAGCAGCGCACGGACATGTACATGCGGCCGTTCCTGCTCAACGTC 300
consensus_2286#1      ------------------------------------------------------------
                                                                                  

consensus_2286#0      TTCTTCTCCAAGCGCTTCGTCCACGCCAAGGTCGTGCACAGGGGCACCAGCAAGGTCATC 360
consensus_2286#1      ------------------------------------------------------------
                                                                                  

consensus_2286#0      TCCGTCGCCAGCACCAACGCCAAGGACCTCAGGACCACGCTGCCCTCCCTCGTCGACGAC 420
consensus_2286#1      ----------------------------------------------CCCTCGTCGACGAC 14
                                                                    **************

consensus_2286#0      AACGCCTGCAGGACCATCGGCCGCCTCATCGCCGAGAGGTCCATGGACGCCGACGTCTTC 480
consensus_2286#1      AACGCCTGCAGGACCATCGGCCGCCTCATCGCCGAGAGGTCCATGGACGCCGACGTCTTC 74
                      ************************************************************

consensus_2286#0      GCCATGTCCTACGAGCCCAAGAAGAACGAGAGGATCGAGGGGAAGCTTGGCATCGTCATC 540
consensus_2286#1      GCCATGTCCTACGAGCCCAAGAAGAACGAGAGGATCGAGGGGAAGCTTGGCATCGTCATC 134
                      ************************************************************

consensus_2286#0      GACACCATTAAGGAGCACGGCATTATATTTGTTTAGGCAAGTTCGGCTTACAACGTTGAT 600
consensus_2286#1      GACACCATTAAGGAGCACGGCATTATATTTGTTTAGGCAAGTTCAGCTTACAACGTTGAT 194
                      ******************************************** ***************

consensus_2286#0      TAAAATATGTTGCGAGGTTTATTGCATGGTAGCTATGTTCATCTGTTGGGTAGCTGAAGT 660
consensus_2286#1      TAAAATATGTTGCGAGGTTTATTGCATGGTAGCTATGTTCATCTGTTGGGTAGCTGAAGT 254
                      ************************************************************

consensus_2286#0      CTGTTGTCCCACCATGTTCATCAAAAATTATGTCTGGAAGAAAGTGGGTGATTAAACAAT 720
consensus_2286#1      CTGTTGTCCCACCATGTTCATCAAAAATTATGTCTGGAAGAAAGTGGGTGATTAAACAAT 314
                      ************************************************************

consensus_2286#0      TGGATAAATCAATTTAGCACAGCTACATATTAAAAGCAAAGGTAAGACCTCAGATTTGCA 780
consensus_2286#1      TGGATAAATCAATTTAGCACAGCTACATATTAAAAGCAAAG-------TGCACAGAAACC 367
                      *****************************************         ** *    * 

consensus_2286#0      CTGCCTATGGTGAATGGTCCTGCACTTA-AGAAAGAGGATAGTAAAATGAGGCTCACATT 839
consensus_2286#1      ATCCTGATATGGATCTTCCCTGCATGAATACACAAATGAAAGTGTTTTTTTTTTCGCATT 427
                       * *  **   **     ******   * * * * * ** ***    *     ** ****

consensus_2286#0      CTTTACTGGTTCTCAAACTATGCTCCTTTCCTAAGTTCAATATTATCTTGTCATGCTTGC 899
consensus_2286#1      CATCTTGTATCCCTGGAAAATGAAGTAATCT--AATTGAATGT-GGCATGTCA------- 477
                      * *      * *    *  ***      **   * ** *** *   * *****       

consensus_2286#0      AGTGCACAGAAACCATCCTGATATGGATCTTCCCTGCATGAATACACAAATGAAAGTGTT 959
consensus_2286#1      ------------------------------------------------------------
                                                                                  

consensus_2286#0      T 960
consensus_2286#1      -