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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2287#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1830 fasta sequence
[CGCACCCCCCACCACGTTATCCTCATGTCCTGTTCCTTCCGCTTCCACTCCTCCGCCCTACCCGCAGCCGCTGCACGGCTCCACCTCTCCCGCGGACTCCGGCCGCCACCGTCACGCCGTCGCCTGCACAACACATTCTCACCCACCCTTTCCATCTCCCCGCCCTCCCGTCACGCCGCCATCGCCGCCGCCGCCGCTTCTCCCCTCGGCGCATCTCAGGAGGCATCGGCGATGGCGGTGTCCGCGTCGGAGGGCGTTGGCCAGTACGATCTGCTGATTGTTGGGCCTGGCGTGCTTGGCCGGATTGTGGCGGAGAGATGGCAGCAGGAGCATCCAGGTTGCAAAATTTTTGGTCATACTGCAACCACAGATCATCACAGTGAATTGACTCAACTTGGGATCATTCCCTCCTTGAAAGGACCAGCTGTTCAGAAAGTTCCGTACGTTATTTTCTGCGCTCCTCCTTATCGGGCAGATGATTACCCAGGAGATCTGAGAGTGGCAGCATCAAACTGGAATGGACAAGGCTTTTTCCTGTTTACATCGAGCACTGCTGTGTATGACTGCAGTGACAATGGATTGTGTAGTGAGGATTCTCCTTGTGTGCCAATTGGTAGGAGCCCTCGTACTGGTGTGCTCCTAAAAGCTGAAAATGCCGTCCTTGAGGCAGGAGGAAGTGTTCTCCGGCTTGTAGGACTTTATATATCCTTACTAAGAGGCGACTTTGTTTCAAAACTTAATGCAAAAATATTATTAAATATACCTGTGCCCCCATACACTTCTGTAATAGAATGGACATAACTGTTATATCTCCTTGACATACCACACAAGAGTGATAAAGGTCCTCACATTTTTTGGTTATCGAAGGGAACTTTTGATTCACGTCCAGATCACATACTCAATCTGATACACTATGAAGTAAGACCTGATACTTATCTATGTTTGGATAATAACATAAATGAGTCACAAAAGAATGTCATTTTGTAATTTGTGCAGTCCACACAAGCTAACTTGTTCATTATATAGGTCTTTTGATATATGAAAAATGACATAGCAAAGTTTGTTATAGCCAAAGCTTTTACAATATTACACTTACGCAACTATTTTAGATTTATGCAGAAGAATTAAGTGGTAAAAGTTATGTTTATTGACTTGAAAAGTTTAAAATGACCACTGTGACCAGAGGGAGTAGTTTAGAATTCATTTAGATTTTGTGGAGTCAAAATAAGGTTTCACTACCTGGTTAGAACTAAGCCACTTGTTGCAGTATTTCTCTCTCCATAATATATGATACAAATAACAGAGAATCTGAAGTTTGATTGAACAGTAAATACAAATTGAAGCATCAAGCAATATTAAGAGCGGTCCAATTTAATAAAACTGGGAGAATTAACAAAGAAAATATTTTAGAGATCCATTTTATAATTCTTACATAGGCAGGCAATAAAGATTGCTGCATGCATGCGGTCTACATATTCCAAGTATTTGTAAGTATGTGCTTTTTCAATTGTTATTATTTGTAGGATGCTGCTTCTCTTGCAATTGCCATTATGAAAAGGAGACTACGTGCTCGTGTTTTTGTTGGTTGTGACAATCAGCCTCTATCTAGGCAAGAAATAATGGACCTTGTTAATAGAAGTGGGAAATTTGATACGAAGTTTCAAGGCTTCACAGGACTGATGGTCCTTTAGGGAAGAGGATGGAGAATTCCAAAACTCGTGCTGAGATTGGGTGGCAACCGAAGTATCCAAGCTTCACAGAATTCCTTGGTTTGAGCAATTAGTATCCATGTATATCACAACATTTTACGGTTTCAATTCAATATTAAAG]
[+] EMBL AK072605 [CGCACCCCCCACCACGTTATCCTCATGTCCTGTTCCTTCCGCTTCCACTCCTCCGCCCTACCCGCAGCCGCTGCACGGCTCCACCTCTCCCGCGGACTCCGGCCGCCACCGTCACGCCGTCGCCTGCACAACACATTCTCACCCACCCTTTCCATCTCCCCGCCCTCCCGTCACGCCGCCATCGCCGCCGCCGCCGCTTCTCCCCTCGGCGCATCTCAGGAGGCATCGGCGATGGCGGTGTCCGCGTCGGAGGGCGTTGGCCAGTACGATCTGCTGATTGTTGGGCCTGGCGTGCTTGGCCGGATTGTGGCGGAGAGATGGCAGCAGGAGCATCCAGGTTGCAAAATTTTTGGTCATACTGCAACCACAGATCATCACAGTGAATTGACTCAACTTGGGATCATTCCCTCCTTGAAAGGACCAGCTGTTCAGAAAGTTCCGTACGTTATTTTCTGCGCTCCTCCTTATCGGGCAGATGATTACCCAGGAGATCTGAGAGTGGCAGCATCAAACTGGAATGGACAAGGCTTTTTCCTGTTTACATCGAGCACTGCTGTGTATGACTGCAGTGACAATGGATTGTGTAGTGAGGATTCTCCTTGTGTGCCAATTGGTAGGAGCCCTCGTACTGGTGTGCTCCTAAAAGCTGAAAATGCCGTCCTTGAGGCAGGAGGAAGTGTTCTCCGGCTTGTAGGACTTTATATATCCTTACTAAGAGGCGACTTTGTTTCAAAACTTAATGCAAAAATATTATTAAATATACCTGTGCCCCCATACACTTCTGTAATAGAATGGACATAACTGTTATATCTCCTTGACATACCACACAAGAGTGATAAAGGTCCTCACATTTTTTGGTTATCGAAGGGAACTTTTGATTCACGTCCAGATCACATACTCAATCTGATACACTATGAAGTAAGACCTGATACTTATCTATGTTTGGATAATAACATAAATGAGTCACAAAAGAATGTCATTTTGTAATTTGTGCAGTCCACACAAGCTAACTTGTTCATTATATAGGTCTTTTGATATATGAAAAATGACATAGCAAAGTTTGTTATAGCCAAAGCTTTTACAATATTACACTTACGCAACTATTTTAGATTTATGCAGAAGAATTAAGTGGTAAAAGTTATGTTTATTGACTTGAAAAGTTTAAAATGACCACTGTGACCAGAGGGAGTAGTTTAGAATTCATTTAGATTTTGTGGAGTCAAAATAAGGTTTCACTACCTGGTTAGAACTAAGCCACTTGTTGCAGTATTTCTCTCTCCATAATATATGATACAAATAACAGAGAATCTGAAGTTTGATTGAACAGTAAATACAAATTGAAGCATCAAGCAATATTAAGAGCGGTCCAATTTAATAAAACTGGGAGAATTAACAAAGAAAATATTTTAGAGATCCATTTTATAATTCTTACATAGGCAGGCAATAAAGATTGCTGCATGCATGCGGTCTACATATTCCAAGTATTTGTAAGTATGTGCTTTTTCAATTGTTATTATTTGTAGGATGCTGCTTCTCTTGCAATTGCCATTATGAAAAGGAGACTACGTGCTCGTGTTTTTGTTGGTTGTGACAATCAGCCTCTATCTAGGCAAGAAATAATGGACCTTGTTAATAGAAGTGGGAAATTTGATACGAAGTTTCAAGGCTTCACAGGACTGATGGTCCTTTAGGGAAGAGGATGGAGAATTCCAAAACTCGTGCTGAGATTGGGTGGCAACCGAAGTATCCAAGCTTCACAGAATTCCTTGGTTTGAGCAATTAGTATCCATGTATATCACAACATTTTACGGTTTCAATTCAATATTAAAG]
consensusID : consensus_2287#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1024 fasta sequence
[GCAGGGCGCACCCCCCACCACGTTATCCTCATGTCCTGTTCCTTCCGCTTCCACTCCTCCGCCCTACCCGCAGCCGCTGCACGGCTCCACCTCTCCCGCGGACTCCGGCCGCCACCGTCACGCCGTCGCCTGCACAACACATTCTCACCCACCCTTTCCATCTCCCCGCCCTCCCGTCACGCCGCCATCGCCGCCGCCGCCGCTTCTCCCCTCGGCGCATCTCAGGAGGCATCGGCGATGGCGGTGTCCGCGTCGGAGGGCGTTGGCCAGTACGATCTGCTGATTGTTGGGCCTGGCGTGCTTGGCCGGATTGTGGCGGAGAGATGGCAGCAGGAGCATCCAGGTTGCAAAATTTTTGGTCATACTGCAACCACAGATCATCACAGTGAATTGACTCAACTTGGGATCATTCCCTCCTTGAAAGGACCAGCTGTTCAGAAAGTTCCGTACGTTATTTTCTGCGCTCCTCCTTATCGGACAGATGATTACCCAGGAGATCTGAGAGTGGCAGCATCAAACTGGAATGGACAAGGCTCTTTCCTGTTTACATCGAGCACTGCTGTGTATGACTGCAGTGACAATGGATTATGTAGTGAGGATGCTGCTTCTCTTGCAATTGCCATTATGAAAAGGAGACTACGTGCTCGTGTTTTTGTTGGTTGTGACAATCAGCCTCTATCTAGGCAAGAAATAATGGACCTTGTTAATAGAAGTGGGAAATTTGATACGAAGTTTCAAGGCTTCACAGGGACTGATGGTCCTTTAGGGAAGAGGATGGAGAATTCCAAAACTCGTGCTGAGATTGGGTGGCAACCGAAGTATCCAAGCTTCACAGAATTCCTTGGTTTGAGCAATTAGTATCCATGTATATCACAACATTTTACGGTTTCAATTCAATATTAAAGCATTGATGTGAATGTGATTCCTCTGGCAGTTGTTTTTTCTTTGGTTATTCTCAGTATGTGAGAGCATATGTGTTGATTTGATTTGTAATGTATGATAATTCATTATTACATAATCGACT]
[+] EMBL AK063804 [GCAGGGCGCACCCCCCACCACGTTATCCTCATGTCCTGTTCCTTCCGCTTCCACTCCTCCGCCCTACCCGCAGCCGCTGCACGGCTCCACCTCTCCCGCGGACTCCGGCCGCCACCGTCACGCCGTCGCCTGCACAACACATTCTCACCCACCCTTTCCATCTCCCCGCCCTCCCGTCACGCCGCCATCGCCGCCGCCGCCGCTTCTCCCCTCGGCGCATCTCAGGAGGCATCGGCGATGGCGGTGTCCGCGTCGGAGGGCGTTGGCCAGTACGATCTGCTGATTGTTGGGCCTGGCGTGCTTGGCCGGATTGTGGCGGAGAGATGGCAGCAGGAGCATCCAGGTTGCAAAATTTTTGGTCATACTGCAACCACAGATCATCACAGTGAATTGACTCAACTTGGGATCATTCCCTCCTTGAAAGGACCAGCTGTTCAGAAAGTTCCGTACGTTATTTTCTGCGCTCCTCCTTATCGGACAGATGATTACCCAGGAGATCTGAGAGTGGCAGCATCAAACTGGAATGGACAAGGCTCTTTCCTGTTTACATCGAGCACTGCTGTGTATGACTGCAGTGACAATGGATTATGTAGTGAGGATGCTGCTTCTCTTGCAATTGCCATTATGAAAAGGAGACTACGTGCTCGTGTTTTTGTTGGTTGTGACAATCAGCCTCTATCTAGGCAAGAAATAATGGACCTTGTTAATAGAAGTGGGAAATTTGATACGAAGTTTCAAGGCTTCACAGGGACTGATGGTCCTTTAGGGAAGAGGATGGAGAATTCCAAAACTCGTGCTGAGATTGGGTGGCAACCGAAGTATCCAAGCTTCACAGAATTCCTTGGTTTGAGCAATTAGTATCCATGTATATCACAACATTTTACGGTTTCAATTCAATATTAAAGCATTGATGTGAATGTGATTCCTCTGGCAGTTGTTTTTTCTTTGGTTATTCTCAGTATGTGAGAGCATATGTGTTGATTTGATTTGTAATGTATGATAATTCATTATTACATAATCGACT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2287#0 ------CGCACCCCCCACCACGTTATCCTCATGTCCTGTTCCTTCCGCTTCCACTCCTCC 54
consensus_2287#1 GCAGGGCGCACCCCCCACCACGTTATCCTCATGTCCTGTTCCTTCCGCTTCCACTCCTCC 60
******************************************************
consensus_2287#0 GCCCTACCCGCAGCCGCTGCACGGCTCCACCTCTCCCGCGGACTCCGGCCGCCACCGTCA 114
consensus_2287#1 GCCCTACCCGCAGCCGCTGCACGGCTCCACCTCTCCCGCGGACTCCGGCCGCCACCGTCA 120
************************************************************
consensus_2287#0 CGCCGTCGCCTGCACAACACATTCTCACCCACCCTTTCCATCTCCCCGCCCTCCCGTCAC 174
consensus_2287#1 CGCCGTCGCCTGCACAACACATTCTCACCCACCCTTTCCATCTCCCCGCCCTCCCGTCAC 180
************************************************************
consensus_2287#0 GCCGCCATCGCCGCCGCCGCCGCTTCTCCCCTCGGCGCATCTCAGGAGGCATCGGCGATG 234
consensus_2287#1 GCCGCCATCGCCGCCGCCGCCGCTTCTCCCCTCGGCGCATCTCAGGAGGCATCGGCGATG 240
************************************************************
consensus_2287#0 GCGGTGTCCGCGTCGGAGGGCGTTGGCCAGTACGATCTGCTGATTGTTGGGCCTGGCGTG 294
consensus_2287#1 GCGGTGTCCGCGTCGGAGGGCGTTGGCCAGTACGATCTGCTGATTGTTGGGCCTGGCGTG 300
************************************************************
consensus_2287#0 CTTGGCCGGATTGTGGCGGAGAGATGGCAGCAGGAGCATCCAGGTTGCAAAATTTTTGGT 354
consensus_2287#1 CTTGGCCGGATTGTGGCGGAGAGATGGCAGCAGGAGCATCCAGGTTGCAAAATTTTTGGT 360
************************************************************
consensus_2287#0 CATACTGCAACCACAGATCATCACAGTGAATTGACTCAACTTGGGATCATTCCCTCCTTG 414
consensus_2287#1 CATACTGCAACCACAGATCATCACAGTGAATTGACTCAACTTGGGATCATTCCCTCCTTG 420
************************************************************
consensus_2287#0 AAAGGACCAGCTGTTCAGAAAGTTCCGTACGTTATTTTCTGCGCTCCTCCTTATCGGGCA 474
consensus_2287#1 AAAGGACCAGCTGTTCAGAAAGTTCCGTACGTTATTTTCTGCGCTCCTCCTTATCGGACA 480
********************************************************* **
consensus_2287#0 GATGATTACCCAGGAGATCTGAGAGTGGCAGCATCAAACTGGAATGGACAAGGCTTTTTC 534
consensus_2287#1 GATGATTACCCAGGAGATCTGAGAGTGGCAGCATCAAACTGGAATGGACAAGGCTCTTTC 540
******************************************************* ****
consensus_2287#0 CTGTTTACATCGAGCACTGCTGTGTATGACTGCAGTGACAATGGATTGTGTAGTGAGGAT 594
consensus_2287#1 CTGTTTACATCGAGCACTGCTGTGTATGACTGCAGTGACAATGGATTATGTAGTGAGGAT 600
*********************************************** ************
consensus_2287#0 TCTCCTTGTGTGCCAATTGGTA---------GGAGCCCTCGTACTGGTGTGCTCCTAAAA 645
consensus_2287#1 GCTGCTTCTCTTGCAATTGCCATTATGAAAAGGAGACTACGTGCTCGTGTTTTTGTTGGT 660
** *** * * ****** * **** * *** ** **** * *
consensus_2287#0 GCTGAAAAT--GCCGTCCTTGAGGCAGGAGGAAGTGTTCTCCGGCTTGTAGGACTTTATA 703
consensus_2287#1 TGTGACAATCAGCCTCTATCTAGGCAAGAAATAATGGACCTTG-TTAATAGAAGTGGGAA 719
*** *** *** * ***** ** * ** * * * *** * * *
consensus_2287#0 TATCCTTACTAAGAGGCGACTTTGTTTCAAAACTTAATGCAAAAATATTATTAAATATAC 763
consensus_2287#1 ATTTGATACGAAGTTTCAAGGCT-TCACAGGGACTGATG---GTCCTTTAGGGAAGAGGA 775
* *** *** * * * * ** * *** *** ** *
consensus_2287#0 CTGTGCCCCCATACACTTCTGTAATAGAATGGACA-TAACTGTTATATCTC--CTTGACA 820
consensus_2287#1 TGGAGAATTCCAAAACTCGTGCTG-AGATTGGGTGGCAACCGAAGTATCCAAGCTTCACA 834
* * * * *** ** *** *** *** * **** *** ***
consensus_2287#0 TACCACACAAGAGTGATAAAGGTCCTCACATTTTTTGGTTATCGAAGGGAACTTTTGATT 880
consensus_2287#1 GAATTCCTTGGTTTGAGCAA-----TTAGTATCCATGTATATCACAACATTTTACGGTTT 889
* * * *** ** * * * ** **** * * * **
consensus_2287#0 CACGTCCAGATCACATACTCAATCTGATACACTATGAAGTAAGACCTGATACTTATCTAT 940
consensus_2287#1 CAATTCAATATTAAAGCATTGATGTGA------ATGTGATTCC-TCTGGCAGTTGTTTTT 942
** ** * ** * * * ** *** *** * *** * ** * * *
consensus_2287#0 GTTTGGATAATAACATAAATGAGTCACAAAAGAATGTCATTTTGTAATTTGTGCAGTCCA 1000
consensus_2287#1 TCTTTGGT--TATTCTCAGTATGTGAGAGCATA-TGTGTTGATTTGATTTGTA------A 993
** * * ** * * * ** * * * * *** * * * ****** *
consensus_2287#0 CACAAGCTAACTTGTTCATTATATAGGTCTTTTGATATATGAAAAATGACATAGCAAAGT 1060
consensus_2287#1 TGTATGATAATTCATT-ATTACATAATCGACT---------------------------- 1024
* * *** * ** **** *** *
consensus_2287#0 TTGTTATAGCCAAAGCTTTTACAATATTACACTTACGCAACTATTTTAGATTTATGCAGA 1120
consensus_2287#1 ------------------------------------------------------------
consensus_2287#0 AGAATTAAGTGGTAAAAGTTATGTTTATTGACTTGAAAAGTTTAAAATGACCACTGTGAC 1180
consensus_2287#1 ------------------------------------------------------------
consensus_2287#0 CAGAGGGAGTAGTTTAGAATTCATTTAGATTTTGTGGAGTCAAAATAAGGTTTCACTACC 1240
consensus_2287#1 ------------------------------------------------------------
consensus_2287#0 TGGTTAGAACTAAGCCACTTGTTGCAGTATTTCTCTCTCCATAATATATGATACAAATAA 1300
consensus_2287#1 ------------------------------------------------------------
consensus_2287#0 CAGAGAATCTGAAGTTTGATTGAACAGTAAATACAAATTGAAGCATCAAGCAATATTAAG 1360
consensus_2287#1 ------------------------------------------------------------
consensus_2287#0 AGCGGTCCAATTTAATAAAACTGGGAGAATTAACAAAGAAAATATTTTAGAGATCCATTT 1420
consensus_2287#1 ------------------------------------------------------------
consensus_2287#0 TATAATTCTTACATAGGCAGGCAATAAAGATTGCTGCATGCATGCGGTCTACATATTCCA 1480
consensus_2287#1 ------------------------------------------------------------
consensus_2287#0 AGTATTTGTAAGTATGTGCTTTTTCAATTGTTATTATTTGTAGGATGCTGCTTCTCTTGC 1540
consensus_2287#1 ------------------------------------------------------------
consensus_2287#0 AATTGCCATTATGAAAAGGAGACTACGTGCTCGTGTTTTTGTTGGTTGTGACAATCAGCC 1600
consensus_2287#1 ------------------------------------------------------------
consensus_2287#0 TCTATCTAGGCAAGAAATAATGGACCTTGTTAATAGAAGTGGGAAATTTGATACGAAGTT 1660
consensus_2287#1 ------------------------------------------------------------
consensus_2287#0 TCAAGGCTTCACAGGACTGATGGTCCTTTAGGGAAGAGGATGGAGAATTCCAAAACTCGT 1720
consensus_2287#1 ------------------------------------------------------------
consensus_2287#0 GCTGAGATTGGGTGGCAACCGAAGTATCCAAGCTTCACAGAATTCCTTGGTTTGAGCAAT 1780
consensus_2287#1 ------------------------------------------------------------
consensus_2287#0 TAGTATCCATGTATATCACAACATTTTACGGTTTCAATTCAATATTAAAG 1830
consensus_2287#1 --------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||