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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2303#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1582 fasta sequence
[CTTCATCCTAATCACCTCGATCATTCGCTACGTTTTTGCTTGTTCAGAGCAACGCATCGCATCATGCCTCGTCCACCTGAACCTGTGCACGTGCTGCTTCTTGCTGCCATCGCAGTGCAAGTGTTCGTCCGGTGCACAGCACAAGCTGCGAGTGATCAGAAGCCACTAGTCTCCAGGCTCGCCAAGGATTACAACACCTCACTCTACACCATCTCCGTCAAGAACGGCGCGCCGCCGCTCGTCGTCGACCTCGCCGGCGCGCTCGTCTGGTCGACGTGCCCGTCCACGCACTCCACGGTGCCATGCCAGTCCGCCGCGTGCGACGCGGTCAACCGGCAGCAGCCTCGCCGCTGCCGGTACGTCGACGGCGGCTGGTTCTGGGCCGGCCGCGAACCGGGGTCGCGCTGCGCCTGCACCGCCCACCCGTTCAATCCGGTCACCGGCGAGTGCTCCACCGGCGATCTGACGACATTCACCATGTCGGCGAACACGACCAACGGCACCGACCTGCTGTACCCGGAGTCGTTCACCGCCGTCGGCGCGTGCGCGCCGGAGCGGCTGCTGGCGTCGCCGTCGCTGCCGCAGGCGGCCGCCGGCGTCGCGGGGTTCTCCGGGACGACGCCGCTCTCGCTGCCGTCGCAGCTCGCCGCGCAGCGCCGGTTCGGCAGCACGTTCGCCCTGTGCCTGCCGGTGTTCGCGACGTTCGGCGACACGCCGGTGTACCTGCCCAACTACAACCCGTACGGGCCCTTCGACTACACCAAGATGCTCCGGCGAACCCCGTTCCTGACGAACCCGAGGAGGAACGGCGGTTACTACCTCCCCGTAAAACGCATCTCCGTGTCGTGGCGCGGGCCCGGCGACGTCCCGGTGTCCCTGCCCGCCGGCGCGCTCGACCTCAACGCCCGCACGGGCCGCGGCGGCGTCGTGCTCAGCACCACGACGCCGTACGCGATCATGCGCACCGACGTGTTCCGCGCCTTCGGCAAGGCGTTCGACACAGTCGTGACCAGAGGAACGGAAAGCAGAATGGCGAGGGTGGCCAGGCAGAAGCAGTTCGAGCTTTGTTACGGCGGCGCAGGCGACACCATGTTGTCATTCCCTATGATGAAGCGGACGGGCTTCGACGCGCCGGCGATCACCCTGGAGTTGGACGCCGGAGCCACGGGTAACTGGACGATACTGAACGGCAACTACCTGGTACGCGAGACGTGCGTTGGGGTCGTGGAGATGGGGCCGGAAGGCATGCCGGTGGACGGCGAGCCGGCGGTGGTGCTCGGCGGGATGCAGTTGGAGAACATCCTGATGGTGTTCGATCTGGACAAACGCACGCTCGGCTTCAGCAGGCTATTGGAATGGGACCTGACGAATTGTTACAGCGCAAGCTTTTTGTGAGGAAATAACTTTATCGTGTCTCAGGCGTTTTCCAATTTCCAGTGCTTGTAGTCATTGTACTCAAACTTGAGTAGTATACATTGGAACAGAATAAGCTGTCACGTACCAGCCTTGATGAATCCTGCAGGGATGAAACTTTTGTTGCTGAAGCTCAAAATTCAAAAGTAATCGATCTAAACTTGTTCAA]
[+] EMBL AK108977 [CTTCATCCTAATCACCTCGATCATTCGCTACGTTTTTGCTTGTTCAGAGCAACGCATCGCATCATGCCTCGTCCACCTGAACCTGTGCACGTGCTGCTTCTTGCTGCCATCGCAGTGCAAGTGTTCGTCCGGTGCACAGCACAAGCTGCGAGTGATCAGAAGCCACTAGTCTCCAGGCTCGCCAAGGATTACAACACCTCACTCTACACCATCTCCGTCAAGAACGGCGCGCCGCCGCTCGTCGTCGACCTCGCCGGCGCGCTCGTCTGGTCGACGTGCCCGTCCACGCACTCCACGGTGCCATGCCAGTCCGCCGCGTGCGACGCGGTCAACCGGCAGCAGCCTCGCCGCTGCCGGTACGTCGACGGCGGCTGGTTCTGGGCCGGCCGCGAACCGGGGTCGCGCTGCGCCTGCACCGCCCACCCGTTCAATCCGGTCACCGGCGAGTGCTCCACCGGCGATCTGACGACATTCACCATGTCGGCGAACACGACCAACGGCACCGACCTGCTGTACCCGGAGTCGTTCACCGCCGTCGGCGCGTGCGCGCCGGAGCGGCTGCTGGCGTCGCCGTCGCTGCCGCAGGCGGCCGCCGGCGTCGCGGGGTTCTCCGGGACGACGCCGCTCTCGCTGCCGTCGCAGCTCGCCGCGCAGCGCCGGTTCGGCAGCACGTTCGCCCTGTGCCTGCCGGTGTTCGCGACGTTCGGCGACACGCCGGTGTACCTGCCCAACTACAACCCGTACGGGCCCTTCGACTACACCAAGATGCTCCGGCGAACCCCGTTCCTGACGAACCCGAGGAGGAACGGCGGTTACTACCTCCCCGTAAAACGCATCTCCGTGTCGTGGCGCGGGCCCGGCGACGTCCCGGTGTCCCTGCCCGCCGGCGCGCTCGACCTCAACGCCCGCACGGGCCGCGGCGGCGTCGTGCTCAGCACCACGACGCCGTACGCGATCATGCGCACCGACGTGTTCCGCGCCTTCGGCAAGGCGTTCGACACAGTCGTGACCAGAGGAACGGAAAGCAGAATGGCGAGGGTGGCCAGGCAGAAGCAGTTCGAGCTTTGTTACGGCGGCGCAGGCGACACCATGTTGTCATTCCCTATGATGAAGCGGACGGGCTTCGACGCGCCGGCGATCACCCTGGAGTTGGACGCCGGAGCCACGGGTAACTGGACGATACTGAACGGCAACTACCTGGTACGCGAGACGTGCGTTGGGGTCGTGGAGATGGGGCCGGAAGGCATGCCGGTGGACGGCGAGCCGGCGGTGGTGCTCGGCGGGATGCAGTTGGAGAACATCCTGATGGTGTTCGATCTGGACAAACGCACGCTCGGCTTCAGCAGGCTATTGGAATGGGACCTGACGAATTGTTACAGCGCAAGCTTTTTGTGAGGAAATAACTTTATCGTGTCTCAGGCGTTTTCCAATTTCCAGTGCTTGTAGTCATTGTACTCAAACTTGAGTAGTATACATTGGAACAGAATAAGCTGTCACGTACCAGCCTTGATGAATCCTGCAGGGATGAAACTTTTGTTGCTGAAGCTCAAAATTCAAAAGTAATCGATCTAAACTTGTTCAA]
consensusID : consensus_2303#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1459 fasta sequence
[ATCAGATTATCTGAAATTCTGATAGACAACATGGCTAACCCTCCTATCAAGTGCTTGCTCCCTCCTGCAATCGTGTCACTAGTTCTGCTGATCTCATGCATGGTGGCAACCGGTGAGCAGCAAGCACCGTACAAACCCCTCGTCGTCCCGCTCGTCAGGGACAGCGACACATCCTTCTACACCATCCCCATCAAGAACGGCGCGCCGCTCGTCGTCGACCTCGCCGGCACGCTCGTCTGGTCGACGTGCCCGTCGACGCACACCACGGTGTCGTGCCTGTCCGGCACGTGCGGCGCAGCCAACCAGCAGCAGCCGCGTCGCTGCCGGTACGTCGATGGCGGCTGGTTCTGGTCAGGCCGCGAGGCGGGGTCGCGCTGCGCCTGCACCGCCCACCCGTTCAACCCGGTCACCGGCGAGTGCTCCACCGGCGATCTGACGACATTCGCCATGTCGGCTAACTCCACCGTCAACGGCACCAGAACGCTGCACCCGGAGGAGTTCGCCGCCGTCGGCTCGTGCGCGCCGCAGCGCCTGCTGGCGTCGCTCCCCGCGGGTGCCACCGGCGTCGCGGGGTTCTCCCGGCGGCCGCTCTCGCTGCCGTCGCAGCTCGCCGCGCAGCGCAACTTCGGCAACAAGTTCGCCCTGTGCATGTCCCAGTTCGCGACGTTCGGCGACGCGCCGGTGTACCTGGGGATGGAGGGCCGAGGCTTCGTCGACTACAGGGAGATCCTCCCGTACACCCCGCTCCTGACGAATCCAAGAATCCCCGGCTACTACCTCCCCGTCAAAGGCATCTCCGTGTCATGGAGCGTTCCCGAGACGCCGGCGTCGCTGCCCGCCGGCGCGCTCGACCTGGACGCCCGCACTGGCCGCGGCGGCGTGGTGCTGAGCACGACGACGCCGTACACGGTCATGCGGCCCGACGTGTTCCGCGCGTTCGCGGAGGCGTTCGACACCGCCATAATCAGGAGGAGCAAGTACACGTACTCCAACGTGACGCGCCACCCGCCCGTGGGACCCTTCAAGCTGTGCTACAACGGCGCGTTCCCGATGCTGAAGCGGCCGGCGAGCATGGACATTCCGACGATCCACCTGGAGCTGGACGGCGCCACGGGCACCTGGTCGTGGTTCAACGACAACTACCTGGTGTTTGCGCCGGGGGCGGCGTTGTGCGTCGGGGTTCTCGAGATGGGTCCCGGCGGCATGCCGGTGGACGGCGAGCCGGCGATGGTGGTCGGCGTGAAGCAGCTGGATTGGAACCTGCTGGTGTTCGATCTGGACAAAATGCTGATGTGGTTCAGTGGGGATCTGGCCTTTCGCTTGGCGGGTTGTTCATATTCTTCTCAAATCGGGTTATAAGATCGACCTGATCAGTGATCAGTCACTCCGTCACGGCCTGAACGACGAGTTGTATGCTTCAGTTCAGAAACTAGTGTTGAATAAGAATCCGACAGACTTG]
[+] EMBL AK064091 [ATCAGATTATCTGAAATTCTGATAGACAACATGGCTAACCCTCCTATCAAGTGCTTGCTCCCTCCTGCAATCGTGTCACTAGTTCTGCTGATCTCATGCATGGTGGCAACCGGTGAGCAGCAAGCACCGTACAAACCCCTCGTCGTCCCGCTCGTCAGGGACAGCGACACATCCTTCTACACCATCCCCATCAAGAACGGCGCGCCGCTCGTCGTCGACCTCGCCGGCACGCTCGTCTGGTCGACGTGCCCGTCGACGCACACCACGGTGTCGTGCCTGTCCGGCACGTGCGGCGCAGCCAACCAGCAGCAGCCGCGTCGCTGCCGGTACGTCGATGGCGGCTGGTTCTGGTCAGGCCGCGAGGCGGGGTCGCGCTGCGCCTGCACCGCCCACCCGTTCAACCCGGTCACCGGCGAGTGCTCCACCGGCGATCTGACGACATTCGCCATGTCGGCTAACTCCACCGTCAACGGCACCAGAACGCTGCACCCGGAGGAGTTCGCCGCCGTCGGCTCGTGCGCGCCGCAGCGCCTGCTGGCGTCGCTCCCCGCGGGTGCCACCGGCGTCGCGGGGTTCTCCCGGCGGCCGCTCTCGCTGCCGTCGCAGCTCGCCGCGCAGCGCAACTTCGGCAACAAGTTCGCCCTGTGCATGTCCCAGTTCGCGACGTTCGGCGACGCGCCGGTGTACCTGGGGATGGAGGGCCGAGGCTTCGTCGACTACAGGGAGATCCTCCCGTACACCCCGCTCCTGACGAATCCAAGAATCCCCGGCTACTACCTCCCCGTCAAAGGCATCTCCGTGTCATGGAGCGTTCCCGAGACGCCGGCGTCGCTGCCCGCCGGCGCGCTCGACCTGGACGCCCGCACTGGCCGCGGCGGCGTGGTGCTGAGCACGACGACGCCGTACACGGTCATGCGGCCCGACGTGTTCCGCGCGTTCGCGGAGGCGTTCGACACCGCCATAATCAGGAGGAGCAAGTACACGTACTCCAACGTGACGCGCCACCCGCCCGTGGGACCCTTCAAGCTGTGCTACAACGGCGCGTTCCCGATGCTGAAGCGGCCGGCGAGCATGGACATTCCGACGATCCACCTGGAGCTGGACGGCGCCACGGGCACCTGGTCGTGGTTCAACGACAACTACCTGGTGTTTGCGCCGGGGGCGGCGTTGTGCGTCGGGGTTCTCGAGATGGGTCCCGGCGGCATGCCGGTGGACGGCGAGCCGGCGATGGTGGTCGGCGTGAAGCAGCTGGATTGGAACCTGCTGGTGTTCGATCTGGACAAAATGCTGATGTGGTTCAGTGGGGATCTGGCCTTTCGCTTGGCGGGTTGTTCATATTCTTCTCAAATCGGGTTATAAGATCGACCTGATCAGTGATCAGTCACTCCGTCACGGCCTGAACGACGAGTTGTATGCTTCAGTTCAGAAACTAGTGTTGAATAAGAATCCGACAGACTTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2303#0 CTTCATCCTAATCACCTCGATCATTCGCTACGTTTTTGCTTGTTCAGAGCAACGCATCGC 60
consensus_2303#1 ----------ATCA----GATTATCTGAAATTCTGATAGACAA-CATGGCTAACCCTCCT 45
**** *** ** * * * * ** ** * * **
consensus_2303#0 ATCATGCCTCGTCCACCTGAACCTGTGCACGTGCTGCTTCTTGCTGCCATCGCAGTGCAA 120
consensus_2303#1 ATCAAGTGCTTGCTCCCT---CCTGCAATCGTGTCACTAGTT-CTGCTGATCTCATGCAT 101
**** * * *** **** **** ** ** **** ****
consensus_2303#0 GTGTTCGTCCGGTGCACAGCACAAGCTGCGAGTGATCAGAAGCCACTAGTCTCCAGGCTC 180
consensus_2303#1 GGTGGCAACCGGTGAGCAGCAAGCACCGT--------ACAAACCCCTCGTCGTCCCGCTC 153
* * ****** ***** * * * ** ** ** *** * ****
consensus_2303#0 GCCAAGGATTACAACACCTCACTCTACACCATCTCCGTCAAGAACGGCGCGCCGCCGCTC 240
consensus_2303#1 GTCAGGGACAGCGACACATCCTTCTACACCATCCCCATCAAGAACGGCGCGCC---GCTC 210
* ** *** * **** ** *********** ** **************** ****
consensus_2303#0 GTCGTCGACCTCGCCGGCGCGCTCGTCTGGTCGACGTGCCCGTCCACGCACTCCACGGTG 300
consensus_2303#1 GTCGTCGACCTCGCCGGCACGCTCGTCTGGTCGACGTGCCCGTCGACGCACACCACGGTG 270
****************** ************************* ****** ********
consensus_2303#0 CCATGCCAGTCCGCCGCGTGCGACGCGGTCAACCGGCAGCAGCCTCGCCGCTGCCGGTAC 360
consensus_2303#1 TCGTGCCTGTCCGGCACGTGCGGCGCAGCCAACCAGCAGCAGCCGCGTCGCTGCCGGTAC 330
* **** ***** * ****** *** * ***** ********* ** ************
consensus_2303#0 GTCGACGGCGGCTGGTTCTGGGCCGGCCGCGAACCGGGGTCGCGCTGCGCCTGCACCGCC 420
consensus_2303#1 GTCGATGGCGGCTGGTTCTGGTCAGGCCGCGAGGCGGGGTCGCGCTGCGCCTGCACCGCC 390
***** *************** * ******** **************************
consensus_2303#0 CACCCGTTCAATCCGGTCACCGGCGAGTGCTCCACCGGCGATCTGACGACATTCACCATG 480
consensus_2303#1 CACCCGTTCAACCCGGTCACCGGCGAGTGCTCCACCGGCGATCTGACGACATTCGCCATG 450
*********** ****************************************** *****
consensus_2303#0 TCGGCGAACACGACC---AACGGCACCGACCTGCTGTACCCGGAGTCGTTCACCGCCGTC 537
consensus_2303#1 TCGGCTAACTCCACCGTCAACGGCACCAGAACGCTGCACCCGGAGGAGTTCGCCGCCGTC 510
***** *** * *** ********* **** ******** **** ********
consensus_2303#0 GGCGCGTGCGCGCCGGAGCGGCTGCTGGCGTCGCCGTCGCTGCCGCAGGCGGCCGCCGGC 597
consensus_2303#1 GGCTCGTGCGCGCCGCAGCGCCTGCTGGCGTCGCTCCC-----CGCGGGTG-CCACCGGC 564
*** *********** **** ************* * *** ** * ** *****
consensus_2303#0 GTCGCGGGGTTCTCCGGGACGACGCCGCTCTCGCTGCCGTCGCAGCTCGCCGCGCAGCGC 657
consensus_2303#1 GTCGCGGGGTTCTCCCGG-CG--GCCGCTCTCGCTGCCGTCGCAGCTCGCCGCGCAGCGC 621
*************** ** ** *************************************
consensus_2303#0 CGGTTCGGCAGCACGTTCGCCCTGTGCCTGCCGGTGTTCGCGACGTTCGGCGACACGCCG 717
consensus_2303#1 AACTTCGGCAACAAGTTCGCCCTGTGCATGTCCCAGTTCGCGACGTTCGGCGACGCGCCG 681
******* ** ************* ** * ******************* *****
consensus_2303#0 GTGTACCTGCCCAACTACAACCCGTACGGGCCCTTCGACTACACCAAGATGCTCCGGCGA 777
consensus_2303#1 GTGTACCTGGGGATGGAGGGCCGA---GGCTTCGTCGACTACAGGGAGATCCTCCCGTAC 738
********* * * ** ** * ********* **** **** *
consensus_2303#0 ACCCCGTTCCTGACGAACCCGAGGAGGAACGGCGGTTACTACCTCCCCGTAAAACGCATC 837
consensus_2303#1 ACCCCGCTCCTGACGAATCCAAGAAT---CCCCGGCTACTACCTCCCCGTCAAAGGCATC 795
****** ********** ** ** * * *** ************** *** *****
consensus_2303#0 TCCGTGTCGTGGCGCGGGCCCGGCGACGTCCCGGTGTCCCTGCCCGCCGGCGCGCTCGAC 897
consensus_2303#1 TCCGTGTCATGGAGCGTTCCCGA-GACG--CCGGCGTCGCTGCCCGCCGGCGCGCTCGAC 852
******** *** *** **** **** **** *** *********************
consensus_2303#0 CTCAACGCCCGCACGGGCCGCGGCGGCGTCGTGCTCAGCACCACGACGCCGTACGCGATC 957
consensus_2303#1 CTGGACGCCCGCACTGGCCGCGGCGGCGTGGTGCTGAGCACGACGACGCCGTACACGGTC 912
** ********** ************** ***** ***** ************ ** **
consensus_2303#0 ATGCGCACCGACGTGTTCCGCGCCTTCGGCAAGGCGTTCGACACAGTCGTGACCAGAGGA 1017
consensus_2303#1 ATGCGGCCCGACGTGTTCCGCGCGTTCGCGGAGGCGTTCGACACCGCCATAATCAGGAGG 972
***** **************** **** ************* * * * * *** *
consensus_2303#0 ACGGAAAGCAGAATGGCGAGGGTGGCCAGGCAGAAGCAGTTCGAGCTTTGTTACGGCGGC 1077
consensus_2303#1 AGCAAGTACACGTACTCCAACGTGACGCGCCACCCGCCCGTGGGACCCT--TCAAGCTGT 1030
* * ** * * *** * * ** ** * * * * * ** *
consensus_2303#0 GCAGGCGACACCATGTTGTCATTCCCTATGATGAAGCGGACGGGCTTCGACGCGCCGGCG 1137
consensus_2303#1 GCTA-CAACGGCGCGTTCCCGATGC---TGAAGCGGCCGGCGAGCATGGACATTCCGACG 1086
** * ** * *** * * * *** * ** * ** ** * *** *** **
consensus_2303#0 ATCACCCTGGAGTTGGACGCCGGAGCCACGGGTAACTGGACGATACTGAACGGCAACTAC 1197
consensus_2303#1 ATCCACCTGGAGCTGGA---CGGCGCCACGGGCACCTGGTCGTGGTTCAACGACAACTAC 1143
*** ******* **** *** ******** * **** ** * **** *******
consensus_2303#0 CTGGTACGCGAGACG------------TGCGTTGGGGTCGTGGAGATGGGGCCGGAAGGC 1245
consensus_2303#1 CTGGTGTTTGCGCCGGGGGCGGCGTTGTGCGTCGGGGTTCTCGAGATGGGTCCCGGCGGC 1203
***** * * ** ***** ***** * ******** ** * ***
consensus_2303#0 ATGCCGGTGGACGGCGAGCCGGCGGTGGTGCTCGGCGGGATGCAGTTGGAGAACATCCTG 1305
consensus_2303#1 ATGCCGGTGGACGGCGAGCCGGCGATGGTGGTCGGCGTGAAGCAGCTGGATTGGAACCTG 1263
************************ ***** ****** ** **** **** * ****
consensus_2303#0 ATGGTGTTCGATCTGGACAAACGCACGCTCGGCTTCAGCAGGCTATTGGAATGGGACCTG 1365
consensus_2303#1 CTGGTGTTCGATCTGGACAAAATGCTGATGTGGTTCAGTGGGGATCTGGCCTTTCGCTTG 1323
******************** * * * ***** ** *** * * **
consensus_2303#0 ACGAATTGTTACAGCGCAAGCTTTTTGTGAGGAAATAACTTTATCGTGTCTCAGGCGTTT 1425
consensus_2303#1 GCGGGTTGTT----CATATTCTTCTC------AAATCGGGTTATAAGATC----GACCTG 1369
** ***** * * *** * **** **** ** * *
consensus_2303#0 TCCAATTTCCAGTGCTTGTAGTCATTGTACTCAAACTTGAGTAGTATACATTGGAACAGA 1485
consensus_2303#1 ATCAGTGATCAGT-CACTCCGTCACGGC-CTGAACGACGAGTTGTATGCTTCAGTTCAGA 1427
** * **** * **** * ** ** **** **** * * * ****
consensus_2303#0 ATAAGCTGTCACGTACCAGCCTTGATGAATCCTGCAGGGATGAAACTTTTGTTGCTGAAG 1545
consensus_2303#1 AACTAGTGTTGAATAAGAATCC-GACAGA-CTTG-------------------------- 1459
* *** ** * * ** * * **
consensus_2303#0 CTCAAAATTCAAAAGTAATCGATCTAAACTTGTTCAA 1582
consensus_2303#1 -------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||