cluster # 2305

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Oryza sativa
cluster # 2305 cluster # 2305 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2305#0 length = 866 sequences # 1

consensus_2305#1 length = 754 sequences # 1

consensusID : consensus_2305#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 866
fasta sequence

                              [TCAAAGAGTGCTTGAAATTGCCGGGAGATGGAGCGGAAACGTTGAGAAACAGGAGCTCACTAACCTGCTCTTTCCTGGTCCTGGAGGTCTTTGTTGCGGAGCTCGGTGGGGATGGGCTTGCCCTCCATGAGCACCTCACGGCTGACGGAGGCGGCACTTGGTTCTCTCGTATAGGTACGCCGTACGCCAGAGCAGAGCAGAGCAGCGTGTCCCACCACAGCATCTTGCCTCGCTCGCCAACCCAGGCAAAAAACCCCACCCTAATACAGGGGGAGCTTGATCCGGAGGGCATGGAGGCGCGCGGCGGCAGAACGTCGGGTCGGAAGAATGGTGCACGCAGTCCTGCAGCCACGGGCCGGCCTCAGATCCAGAAATATCCAGGCACCGGCTCGTGGAGGAGGAGGAGCGGCGTTGGCGCTGGTGGCGGCCGGGATGAGGTCTCGACGTCAGTTCATAGGGGGAACCGGGAGGCGTTGCCGTCGGCTAGCTTGCTAGGAGGAGGGGGATGCGGGTGGAAGAAATTCGTCGTCGCCGGCGGCGGCGGCGGCGAGAGGCGCGGGGCGCAGGTGGGGGGTGAGAGGATTTGGTGTGGGAGAGCCGGAGAGAAGGATATTTTGCACACAAGTCCTTGTATTTTGTACGATTACTGCGCTACCCTTAATAAAACCAAAATTTTGTTTTCTTTGTATTCTATTTTGTTAAATAACAATGAGGGTCTTTTAATATTACAACTTCCACAGTACATTTAATTTAAACAAGAGTATATCTCTATGTATAGCCAAAAGTTGCTATATTTTAGAACAGATGTATTGTACGAAATGGTATAAATAGTGTATTAAATATTTTATTGAATGGTATATAAATAT]

[+] EMBL AK108685             [TCAAAGAGTGCTTGAAATTGCCGGGAGATGGAGCGGAAACGTTGAGAAACAGGAGCTCACTAACCTGCTCTTTCCTGGTCCTGGAGGTCTTTGTTGCGGAGCTCGGTGGGGATGGGCTTGCCCTCCATGAGCACCTCACGGCTGACGGAGGCGGCACTTGGTTCTCTCGTATAGGTACGCCGTACGCCAGAGCAGAGCAGAGCAGCGTGTCCCACCACAGCATCTTGCCTCGCTCGCCAACCCAGGCAAAAAACCCCACCCTAATACAGGGGGAGCTTGATCCGGAGGGCATGGAGGCGCGCGGCGGCAGAACGTCGGGTCGGAAGAATGGTGCACGCAGTCCTGCAGCCACGGGCCGGCCTCAGATCCAGAAATATCCAGGCACCGGCTCGTGGAGGAGGAGGAGCGGCGTTGGCGCTGGTGGCGGCCGGGATGAGGTCTCGACGTCAGTTCATAGGGGGAACCGGGAGGCGTTGCCGTCGGCTAGCTTGCTAGGAGGAGGGGGATGCGGGTGGAAGAAATTCGTCGTCGCCGGCGGCGGCGGCGGCGAGAGGCGCGGGGCGCAGGTGGGGGGTGAGAGGATTTGGTGTGGGAGAGCCGGAGAGAAGGATATTTTGCACACAAGTCCTTGTATTTTGTACGATTACTGCGCTACCCTTAATAAAACCAAAATTTTGTTTTCTTTGTATTCTATTTTGTTAAATAACAATGAGGGTCTTTTAATATTACAACTTCCACAGTACATTTAATTTAAACAAGAGTATATCTCTATGTATAGCCAAAAGTTGCTATATTTTAGAACAGATGTATTGTACGAAATGGTATAAATAGTGTATTAAATATTTTATTGAATGGTATATAAATAT]




>consensus_2305#0
TCAAAGAGTGCTTGAAATTGCCGGGAGATGGAGCGGAAACGTTGAGAAACAGGAGCTCAC
TAACCTGCTCTTTCCTGGTCCTGGAGGTCTTTGTTGCGGAGCTCGGTGGGGATGGGCTTG
CCCTCCATGAGCACCTCACGGCTGACGGAGGCGGCACTTGGTTCTCTCGTATAGGTACGC
CGTACGCCAGAGCAGAGCAGAGCAGCGTGTCCCACCACAGCATCTTGCCTCGCTCGCCAA
CCCAGGCAAAAAACCCCACCCTAATACAGGGGGAGCTTGATCCGGAGGGCATGGAGGCGC
GCGGCGGCAGAACGTCGGGTCGGAAGAATGGTGCACGCAGTCCTGCAGCCACGGGCCGGC
CTCAGATCCAGAAATATCCAGGCACCGGCTCGTGGAGGAGGAGGAGCGGCGTTGGCGCTG
GTGGCGGCCGGGATGAGGTCTCGACGTCAGTTCATAGGGGGAACCGGGAGGCGTTGCCGT
CGGCTAGCTTGCTAGGAGGAGGGGGATGCGGGTGGAAGAAATTCGTCGTCGCCGGCGGCG
GCGGCGGCGAGAGGCGCGGGGCGCAGGTGGGGGGTGAGAGGATTTGGTGTGGGAGAGCCG
GAGAGAAGGATATTTTGCACACAAGTCCTTGTATTTTGTACGATTACTGCGCTACCCTTA
ATAAAACCAAAATTTTGTTTTCTTTGTATTCTATTTTGTTAAATAACAATGAGGGTCTTT
TAATATTACAACTTCCACAGTACATTTAATTTAAACAAGAGTATATCTCTATGTATAGCC
AAAAGTTGCTATATTTTAGAACAGATGTATTGTACGAAATGGTATAAATAGTGTATTAAA
TATTTTATTGAATGGTATATAAATAT

consensusID : consensus_2305#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 754
fasta sequence

                              [CTTGCAGCTGTTCATTCCTTTTTACAAAAATAGGGATGACTTAATTGTGAAAGACAGTGCAGGGATGGGGAAATTGGCATGACAGAATCCAAAGGAACCGTTGTTGACTGCAGCTCAAGGCTACATCATCACAGTTAACAAAAGCTGAAGAATGCATCCCAAAATATGAGCGGTCCCTGTACCCAAATATGACACAGTGTGTATTGTTCTGTATTCTCTAACCTAAATAGTGACAATGTATATAAACATTGTCCATGAAATCCCATCCAAAGCCATCTGATAAATATTAGTTTGAATGTACATATAATTTAACCACACCTCCACTTTGTTGAAGACCCTTTCTGATTGACCAGTCATCCATTGTACTCTCCATCATCTTGCGCAGAAACGCATGAGGGGACTTCAATGCAGCAGATAATTTATCAGACTTAACCACTGACTTTATTTCAGTATATCTTGCAAAAGTTCAATTCCTTTTTTTTCACCAACTTGTCCAACTGCATCATGTATCTTCTCTTCCTCCAGGAGAAGGATGGATTCACTGAAAGTGGAGCTGACTCCTGATAAATTTCCATCCTGCAACTCAGCCTATGCCATCTTTACTTGGAAGGCCTATTAAGCAAGAAGCCATTACATGAAACAGGGTTGGGCTAAGTGGTGTGAAAATCTGCTCTTTCCTGGTCCTGGAGGTCTTTGTTGCGGAGCTCGGTGGGGATGGGCTTGCCCTCCATGAGCACCTCACGGCTGACGGAGG]

[+] EMBL CB652850             [CTTGCAGCTGTTCATTCCTTTTTACAAAAATAGGGATGACTTAATTGTGAAAGACAGTGCAGGGATGGGGAAATTGGCATGACAGAATCCAAAGGAACCGTTGTTGACTGCAGCTCAAGGCTACATCATCACAGTTAACAAAAGCTGAAGAATGCATCCCAAAATATGAGCGGTCCCTGTACCCAAATATGACACAGTGTGTATTGTTCTGTATTCTCTAACCTAAATAGTGACAATGTATATAAACATTGTCCATGAAATCCCATCCAAAGCCATCTGATAAATATTAGTTTGAATGTACATATAATTTAACCACACCTCCACTTTGTTGAAGACCCTTTCTGATTGACCAGTCATCCATTGTACTCTCCATCATCTTGCGCAGAAACGCATGAGGGGACTTCAATGCAGCAGATAATTTATCAGACTTAACCACTGACTTTATTTCAGTATATCTTGCAAAAGTTCAATTCCTTTTTTTTCACCAACTTGTCCAACTGCATCATGTATCTTCTCTTCCTCCAGGAGAAGGATGGATTCACTGAAAGTGGAGCTGACTCCTGATAAATTTCCATCCTGCAACTCAGCCTATGCCATCTTTACTTGGAAGGCCTATTAAGCAAGAAGCCATTACATGAAACAGGGTTGGGCTAAGTGGTGTGAAAATCTGCTCTTTCCTGGTCCTGGAGGTCTTTGTTGCGGAGCTCGGTGGGGATGGGCTTGCCCTCCATGAGCACCTCACGGCTGACGGAGG]




>consensus_2305#1
CTTGCAGCTGTTCATTCCTTTTTACAAAAATAGGGATGACTTAATTGTGAAAGACAGTGC
AGGGATGGGGAAATTGGCATGACAGAATCCAAAGGAACCGTTGTTGACTGCAGCTCAAGG
CTACATCATCACAGTTAACAAAAGCTGAAGAATGCATCCCAAAATATGAGCGGTCCCTGT
ACCCAAATATGACACAGTGTGTATTGTTCTGTATTCTCTAACCTAAATAGTGACAATGTA
TATAAACATTGTCCATGAAATCCCATCCAAAGCCATCTGATAAATATTAGTTTGAATGTA
CATATAATTTAACCACACCTCCACTTTGTTGAAGACCCTTTCTGATTGACCAGTCATCCA
TTGTACTCTCCATCATCTTGCGCAGAAACGCATGAGGGGACTTCAATGCAGCAGATAATT
TATCAGACTTAACCACTGACTTTATTTCAGTATATCTTGCAAAAGTTCAATTCCTTTTTT
TTCACCAACTTGTCCAACTGCATCATGTATCTTCTCTTCCTCCAGGAGAAGGATGGATTC
ACTGAAAGTGGAGCTGACTCCTGATAAATTTCCATCCTGCAACTCAGCCTATGCCATCTT
TACTTGGAAGGCCTATTAAGCAAGAAGCCATTACATGAAACAGGGTTGGGCTAAGTGGTG
TGAAAATCTGCTCTTTCCTGGTCCTGGAGGTCTTTGTTGCGGAGCTCGGTGGGGATGGGC
TTGCCCTCCATGAGCACCTCACGGCTGACGGAGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2305#0      TCAAAGAGTGCTTGAAATTGCCGGGAGATGGAGCGGAAACGTTGAGAAACAGGAGCTCAC 60
consensus_2305#1      ------------------------------------------------CTTGCAGCT-GT 11
                                                                         * ****   

consensus_2305#0      TAACCTGCTCTTTCCTGGTCCTGGAGGTCTTTGTTGCGGAGCTCGGTG--GGGATGGGCT 118
consensus_2305#1      TCATTCCTTTTTACAAAAATAGGGATGACTTAATTGTGAAAGACAGTGCAGGGATGGGGA 71
                      * *     * ** *        *** * ***  *** * *   * ***  ********  

consensus_2305#0      TGCCCTCCATGAGCACCTCACGGCTGACGGAGGCGGCACTTGGTTCTCTCGTATAGGTAC 178
consensus_2305#1      A-------ATTGGCATGACAGAATCCAAAGGAACCGTTGTTGACTGCAGCTCAAGGCTAC 124
                              **  ***   **      *  *   * *   ***  *    *  *  * ***

consensus_2305#0      GCCGT-ACGCCAGAGCAGAGCAGAGCAGCGTGTCCCACCACAGCATCTTGCCTCGCTCGC 237
consensus_2305#1      ATCATCACAGTTAACAAAAGCTGAAGAATGCATCCCAAAATATGAGCGGTCCCTGTACCC 184
                        * * **     *  * *** **  *  *  *****  * *  * *   **  *  * *

consensus_2305#0      CAACCCAG-GCAAAAAACCCCACCCTAATACAGGGGGAGCTTGATCCGGAGGGCATGGAG 296
consensus_2305#1      AAATATGACACAGTGTGTATTGTTCTG-TATTCTCTAACCTAAATAGTGACAATGTATAT 243
                       **       **            **  **       * **  **   **     *  * 

consensus_2305#0      GCGCGCGGCGGCAGAACGTCGGGTCGGAAGAAT--GGTGCACGC-AGTCC---TGCAGCC 350
consensus_2305#1      AAACATTGTCCATGAAATCCCATCCAAAGCCATCTGATAAATATTAGTTTGAATGTACAT 303
                         *   *     ***   *    *  *   **  * *  *    ***     ** *   

consensus_2305#0      ACGGGCCGGCCTCAGATCCAGAAATATCCAGGCACCGGCTCGTGGAGGAGG-AGGAGCGG 409
consensus_2305#1      ATAATTTAACCACACCTCCACTTTGTTGAAGACCCTTTCTGATTGACCAGTCATCCATTG 363
                      *        ** **  ****      *  ** * *   **  * **  **  *      *

consensus_2305#0      CGTTGGCGCTGGTGGCG-GCCGGGATG-AGGTCTCGACGTCAGTTCATAGGGGGAACCGG 467
consensus_2305#1      TACTCTCCATCATCTTGCGCAGAAACGCATGAGGGGACTTCAATGCAGCAGATAATTTAT 423
                         *  *  *  *   * ** *  * * * *    *** *** * **   *   *     

consensus_2305#0      GAGGCGTTGCCGTCGGCTAGCTTGCTAGGAGGAGGGGGATGCGGGTGGAAGAAATTCGTC 527
consensus_2305#1      CAGACTTAACCACTGACT---TTATTTCAGTATATCTTGCAAAAGTTCAATTCCTTTTTT 480
                       ** * *  **   * **   **  *                  **  **    **  * 

consensus_2305#0      GTCGCCGGCGGCGGCGGCGGCGAGAGGCGCGGGGCGCAGGT--GGGGGGTGAGAGGATTT 585
consensus_2305#1      TTCACCAACTTGTCCAACTGCATCATGTATCTTCTCTTCCTCCAGGAGAAGGATGGATTC 540
                       ** **  *     *  * **   * *             *   ** *  *   ***** 

consensus_2305#0      GGTGTGGGAGAGCCGGAGAGAAGGATATTTTGCACACAAGTCCTTGTATTTTGT-ACGAT 644
consensus_2305#1      ACTGAAAGTGGAGCTGACTCCTGATAAATTTCCATCCTGCAACTCAGCCTATGCCATCTT 600
                        **   * *   * **     *   * *** **  *     **     * **  *   *

consensus_2305#0      TACTGCGCTACCCTTAATAAAACCAAAATTTTGTTTTCTTTGTATTCTATTTTGTTAAAT 704
consensus_2305#1      TACTTGGAAGGCCT--ATTAAGCAAGAAGCCA--TTACATGAAACAGGGTTGGGCTAAGT 656
                      ****  *    ***  ** ** * * **      ** * *   *     **  * *** *

consensus_2305#0      AACAATGAGGGTCTTTTAATATTACAACTTCCACAGTACATTTAATTTAAACAAGAGTAT 764
consensus_2305#1      GGTG-TGAAAATCTGCT--CTTTCCTGGTCCTGGAGGTC-TTTGTTGCGGAGCTCGGTGG 712
                           ***   ***  *    ** *   * *   **  * ***  *    *     **  

consensus_2305#0      ATCTCTATGTATAGCCAAAAGTTGCTATATTTTAGAACAGATGTATTGTACGAAATGGTA 824
consensus_2305#1      GGATGGGCTTGCCCTCCATGAGCACCTCACGGCTGA-CGGAGG----------------- 754
                         *     *     * *      *   *     ** * ** *                 

consensus_2305#0      TAAATAGTGTATTAAATATTTTATTGAATGGTATATAAATAT 866
consensus_2305#1      ------------------------------------------