These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2305#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 866 fasta sequence [TCAAAGAGTGCTTGAAATTGCCGGGAGATGGAGCGGAAACGTTGAGAAACAGGAGCTCACTAACCTGCTCTTTCCTGGTCCTGGAGGTCTTTGTTGCGGAGCTCGGTGGGGATGGGCTTGCCCTCCATGAGCACCTCACGGCTGACGGAGGCGGCACTTGGTTCTCTCGTATAGGTACGCCGTACGCCAGAGCAGAGCAGAGCAGCGTGTCCCACCACAGCATCTTGCCTCGCTCGCCAACCCAGGCAAAAAACCCCACCCTAATACAGGGGGAGCTTGATCCGGAGGGCATGGAGGCGCGCGGCGGCAGAACGTCGGGTCGGAAGAATGGTGCACGCAGTCCTGCAGCCACGGGCCGGCCTCAGATCCAGAAATATCCAGGCACCGGCTCGTGGAGGAGGAGGAGCGGCGTTGGCGCTGGTGGCGGCCGGGATGAGGTCTCGACGTCAGTTCATAGGGGGAACCGGGAGGCGTTGCCGTCGGCTAGCTTGCTAGGAGGAGGGGGATGCGGGTGGAAGAAATTCGTCGTCGCCGGCGGCGGCGGCGGCGAGAGGCGCGGGGCGCAGGTGGGGGGTGAGAGGATTTGGTGTGGGAGAGCCGGAGAGAAGGATATTTTGCACACAAGTCCTTGTATTTTGTACGATTACTGCGCTACCCTTAATAAAACCAAAATTTTGTTTTCTTTGTATTCTATTTTGTTAAATAACAATGAGGGTCTTTTAATATTACAACTTCCACAGTACATTTAATTTAAACAAGAGTATATCTCTATGTATAGCCAAAAGTTGCTATATTTTAGAACAGATGTATTGTACGAAATGGTATAAATAGTGTATTAAATATTTTATTGAATGGTATATAAATAT] [+] EMBL AK108685 [TCAAAGAGTGCTTGAAATTGCCGGGAGATGGAGCGGAAACGTTGAGAAACAGGAGCTCACTAACCTGCTCTTTCCTGGTCCTGGAGGTCTTTGTTGCGGAGCTCGGTGGGGATGGGCTTGCCCTCCATGAGCACCTCACGGCTGACGGAGGCGGCACTTGGTTCTCTCGTATAGGTACGCCGTACGCCAGAGCAGAGCAGAGCAGCGTGTCCCACCACAGCATCTTGCCTCGCTCGCCAACCCAGGCAAAAAACCCCACCCTAATACAGGGGGAGCTTGATCCGGAGGGCATGGAGGCGCGCGGCGGCAGAACGTCGGGTCGGAAGAATGGTGCACGCAGTCCTGCAGCCACGGGCCGGCCTCAGATCCAGAAATATCCAGGCACCGGCTCGTGGAGGAGGAGGAGCGGCGTTGGCGCTGGTGGCGGCCGGGATGAGGTCTCGACGTCAGTTCATAGGGGGAACCGGGAGGCGTTGCCGTCGGCTAGCTTGCTAGGAGGAGGGGGATGCGGGTGGAAGAAATTCGTCGTCGCCGGCGGCGGCGGCGGCGAGAGGCGCGGGGCGCAGGTGGGGGGTGAGAGGATTTGGTGTGGGAGAGCCGGAGAGAAGGATATTTTGCACACAAGTCCTTGTATTTTGTACGATTACTGCGCTACCCTTAATAAAACCAAAATTTTGTTTTCTTTGTATTCTATTTTGTTAAATAACAATGAGGGTCTTTTAATATTACAACTTCCACAGTACATTTAATTTAAACAAGAGTATATCTCTATGTATAGCCAAAAGTTGCTATATTTTAGAACAGATGTATTGTACGAAATGGTATAAATAGTGTATTAAATATTTTATTGAATGGTATATAAATAT] consensusID : consensus_2305#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 754 fasta sequence [CTTGCAGCTGTTCATTCCTTTTTACAAAAATAGGGATGACTTAATTGTGAAAGACAGTGCAGGGATGGGGAAATTGGCATGACAGAATCCAAAGGAACCGTTGTTGACTGCAGCTCAAGGCTACATCATCACAGTTAACAAAAGCTGAAGAATGCATCCCAAAATATGAGCGGTCCCTGTACCCAAATATGACACAGTGTGTATTGTTCTGTATTCTCTAACCTAAATAGTGACAATGTATATAAACATTGTCCATGAAATCCCATCCAAAGCCATCTGATAAATATTAGTTTGAATGTACATATAATTTAACCACACCTCCACTTTGTTGAAGACCCTTTCTGATTGACCAGTCATCCATTGTACTCTCCATCATCTTGCGCAGAAACGCATGAGGGGACTTCAATGCAGCAGATAATTTATCAGACTTAACCACTGACTTTATTTCAGTATATCTTGCAAAAGTTCAATTCCTTTTTTTTCACCAACTTGTCCAACTGCATCATGTATCTTCTCTTCCTCCAGGAGAAGGATGGATTCACTGAAAGTGGAGCTGACTCCTGATAAATTTCCATCCTGCAACTCAGCCTATGCCATCTTTACTTGGAAGGCCTATTAAGCAAGAAGCCATTACATGAAACAGGGTTGGGCTAAGTGGTGTGAAAATCTGCTCTTTCCTGGTCCTGGAGGTCTTTGTTGCGGAGCTCGGTGGGGATGGGCTTGCCCTCCATGAGCACCTCACGGCTGACGGAGG] [+] EMBL CB652850 [CTTGCAGCTGTTCATTCCTTTTTACAAAAATAGGGATGACTTAATTGTGAAAGACAGTGCAGGGATGGGGAAATTGGCATGACAGAATCCAAAGGAACCGTTGTTGACTGCAGCTCAAGGCTACATCATCACAGTTAACAAAAGCTGAAGAATGCATCCCAAAATATGAGCGGTCCCTGTACCCAAATATGACACAGTGTGTATTGTTCTGTATTCTCTAACCTAAATAGTGACAATGTATATAAACATTGTCCATGAAATCCCATCCAAAGCCATCTGATAAATATTAGTTTGAATGTACATATAATTTAACCACACCTCCACTTTGTTGAAGACCCTTTCTGATTGACCAGTCATCCATTGTACTCTCCATCATCTTGCGCAGAAACGCATGAGGGGACTTCAATGCAGCAGATAATTTATCAGACTTAACCACTGACTTTATTTCAGTATATCTTGCAAAAGTTCAATTCCTTTTTTTTCACCAACTTGTCCAACTGCATCATGTATCTTCTCTTCCTCCAGGAGAAGGATGGATTCACTGAAAGTGGAGCTGACTCCTGATAAATTTCCATCCTGCAACTCAGCCTATGCCATCTTTACTTGGAAGGCCTATTAAGCAAGAAGCCATTACATGAAACAGGGTTGGGCTAAGTGGTGTGAAAATCTGCTCTTTCCTGGTCCTGGAGGTCTTTGTTGCGGAGCTCGGTGGGGATGGGCTTGCCCTCCATGAGCACCTCACGGCTGACGGAGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2305#0 TCAAAGAGTGCTTGAAATTGCCGGGAGATGGAGCGGAAACGTTGAGAAACAGGAGCTCAC 60 consensus_2305#1 ------------------------------------------------CTTGCAGCT-GT 11 * **** consensus_2305#0 TAACCTGCTCTTTCCTGGTCCTGGAGGTCTTTGTTGCGGAGCTCGGTG--GGGATGGGCT 118 consensus_2305#1 TCATTCCTTTTTACAAAAATAGGGATGACTTAATTGTGAAAGACAGTGCAGGGATGGGGA 71 * * * ** * *** * *** *** * * * *** ******** consensus_2305#0 TGCCCTCCATGAGCACCTCACGGCTGACGGAGGCGGCACTTGGTTCTCTCGTATAGGTAC 178 consensus_2305#1 A-------ATTGGCATGACAGAATCCAAAGGAACCGTTGTTGACTGCAGCTCAAGGCTAC 124 ** *** ** * * * * *** * * * * *** consensus_2305#0 GCCGT-ACGCCAGAGCAGAGCAGAGCAGCGTGTCCCACCACAGCATCTTGCCTCGCTCGC 237 consensus_2305#1 ATCATCACAGTTAACAAAAGCTGAAGAATGCATCCCAAAATATGAGCGGTCCCTGTACCC 184 * * ** * * *** ** * * ***** * * * * ** * * * consensus_2305#0 CAACCCAG-GCAAAAAACCCCACCCTAATACAGGGGGAGCTTGATCCGGAGGGCATGGAG 296 consensus_2305#1 AAATATGACACAGTGTGTATTGTTCTG-TATTCTCTAACCTAAATAGTGACAATGTATAT 243 ** ** ** ** * ** ** ** * * consensus_2305#0 GCGCGCGGCGGCAGAACGTCGGGTCGGAAGAAT--GGTGCACGC-AGTCC---TGCAGCC 350 consensus_2305#1 AAACATTGTCCATGAAATCCCATCCAAAGCCATCTGATAAATATTAGTTTGAATGTACAT 303 * * *** * * * ** * * * *** ** * consensus_2305#0 ACGGGCCGGCCTCAGATCCAGAAATATCCAGGCACCGGCTCGTGGAGGAGG-AGGAGCGG 409 consensus_2305#1 ATAATTTAACCACACCTCCACTTTGTTGAAGACCCTTTCTGATTGACCAGTCATCCATTG 363 * ** ** **** * ** * * ** * ** ** * * consensus_2305#0 CGTTGGCGCTGGTGGCG-GCCGGGATG-AGGTCTCGACGTCAGTTCATAGGGGGAACCGG 467 consensus_2305#1 TACTCTCCATCATCTTGCGCAGAAACGCATGAGGGGACTTCAATGCAGCAGATAATTTAT 423 * * * * * ** * * * * * *** *** * ** * * consensus_2305#0 GAGGCGTTGCCGTCGGCTAGCTTGCTAGGAGGAGGGGGATGCGGGTGGAAGAAATTCGTC 527 consensus_2305#1 CAGACTTAACCACTGACT---TTATTTCAGTATATCTTGCAAAAGTTCAATTCCTTTTTT 480 ** * * ** * ** ** * ** ** ** * consensus_2305#0 GTCGCCGGCGGCGGCGGCGGCGAGAGGCGCGGGGCGCAGGT--GGGGGGTGAGAGGATTT 585 consensus_2305#1 TTCACCAACTTGTCCAACTGCATCATGTATCTTCTCTTCCTCCAGGAGAAGGATGGATTC 540 ** ** * * * ** * * * ** * * ***** consensus_2305#0 GGTGTGGGAGAGCCGGAGAGAAGGATATTTTGCACACAAGTCCTTGTATTTTGT-ACGAT 644 consensus_2305#1 ACTGAAAGTGGAGCTGACTCCTGATAAATTTCCATCCTGCAACTCAGCCTATGCCATCTT 600 ** * * * ** * * *** ** * ** * ** * * consensus_2305#0 TACTGCGCTACCCTTAATAAAACCAAAATTTTGTTTTCTTTGTATTCTATTTTGTTAAAT 704 consensus_2305#1 TACTTGGAAGGCCT--ATTAAGCAAGAAGCCA--TTACATGAAACAGGGTTGGGCTAAGT 656 **** * *** ** ** * * ** ** * * * ** * *** * consensus_2305#0 AACAATGAGGGTCTTTTAATATTACAACTTCCACAGTACATTTAATTTAAACAAGAGTAT 764 consensus_2305#1 GGTG-TGAAAATCTGCT--CTTTCCTGGTCCTGGAGGTC-TTTGTTGCGGAGCTCGGTGG 712 *** *** * ** * * * ** * *** * * ** consensus_2305#0 ATCTCTATGTATAGCCAAAAGTTGCTATATTTTAGAACAGATGTATTGTACGAAATGGTA 824 consensus_2305#1 GGATGGGCTTGCCCTCCATGAGCACCTCACGGCTGA-CGGAGG----------------- 754 * * * * * * ** * ** * consensus_2305#0 TAAATAGTGTATTAAATATTTTATTGAATGGTATATAAATAT 866 consensus_2305#1 ------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||