These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2316#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 515 fasta sequence [CTTGATTCCCCGTGCCAGCTAAAAAACCAGGGCCTTTTTTGTTACCCGTATATAGTACTAAAAGTTCTGCTTCGTGTGTTATCCCCTCCTGCTGGCCTCCCTCGTCGTCCCCCTCGTGCCACTGGCTCCAGGATTGTGGTCATCCTCCAGGGTATGTTTACCTGAGCACCTTCGCAGCGGCTTCGACTCCTTGGTACTCCTAGTCTCCTGCCAGCTATAGAAGGAACGAAACTTCAGGGTTTTCGACTCTGCGCTCGCTTCGGTCCAGTGGTTCTAGAGTCCTTCCGCTCGGAGGCCAGCTGTGGTCTTTAGCCAGTGTTACTTGTTTTGGGGATTTCTTGGGAGTGTAGCGTGGCTCTGCCCCCTCCCGCTGTTTGGAGTTGCGTTTTTAACCGTCGTAGTAGTTCCTAGCTTCAAGTCCCCCCCTTTAGGCATAACCAGTCTACTGATTGCTTTGTGTAACAAAACTCTTTTCTAATATATCGACGTCCATTCTTTTACGCGTAAAAAAAAAA] [+] EMBL BI798729 [CTTGATTCCCCGTGCCAGCTAAAAAACCAGGGCCTTTTTTGTTACCCGTATATAGTACTAAAAGTTCTGCTTCGTGTGTTATCCCCTCCTGCTGGCCTCCCTCGTCGTCCCCCTCGTGCCACTGGCTCCAGGATTGTGGTCATCCTCCAGGGTATGTTTACCTGAGCACCTTCGCAGCGGCTTCGACTCCTTGGTACTCCTAGTCTCCTGCCAGCTATAGAAGGAACGAAACTTCAGGGTTTTCGACTCTGCGCTCGCTTCGGTCCAGTGGTTCTAGAGTCCTTCCGCTCGGAGGCCAGCTGTGGTCTTTAGCCAGTGTTACTTGTTTTGGGGATTTCTTGGGAGTGTAGCGTGGCTCTGCCCCCTCCCGCTGTTTGGAGTTGCGTTTTTAACCGTCGTAGTAGTTCCTAGCTTCAAGTCCCCCCCTTTAGGCATAACCAGTCTACTGATTGCTTTGTGTAACAAAACTCTTTTCTAATATATCGACGTCCATTCTTTTACGCGTAAAAAAAAAA] consensusID : consensus_2316#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 307 fasta sequence [CGACTCTGCGCTCGCTTCGGTCGCAGNGGTTCTAGAGTCCTTCCGCTCGGAGGGCCAGCTGNGGTCTTTAGCCNGTGNTNCTTGTTTTGGGGATTTCTTGGGAGTGTAGCGNGNCTCTGCCCCCTNCCGNTGTTTGGAGTTGCGNTTTTAACCGNCGTAGNAGCGTCCTAGCTTCAAGNCCCCCCCTTTANGCATAANCCAGTNTAGCTGATTGCTTTGAGNAACAAAAACTCTTTTCTAATATATTGACGTGCAATTCTTTTACGCGTCCACGNNAANGCNAAAACACAANANTGGNACGCTCTNN] [+] EMBL CA764999 [CGACTCTGCGCTCGCTTCGGTCGCAGNGGTTCTAGAGTCCTTCCGCTCGGAGGGCCAGCTGNGGTCTTTAGCCNGTGNTNCTTGTTTTGGGGATTTCTTGGGAGTGTAGCGNGNCTCTGCCCCCTNCCGNTGTTTGGAGTTGCGNTTTTAACCGNCGTAGNAGCGTCCTAGCTTCAAGNCCCCCCCTTTANGCATAANCCAGTNTAGCTGATTGCTTTGAGNAACAAAAACTCTTTTCTAATATATTGACGTGCAATTCTTTTACGCGTCCACGNNAANGCNAAAACACAANANTGGNACGCTCTNN] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2316#0 CTTGATTCCCCGTGCCAGCTAAAAAACCAGGGCCTTTTTTGTTACCCGTATATAGTACTA 60 consensus_2316#1 ------------------------------------------------------------ consensus_2316#0 AAAGTTCTGCTTCGTGTGTTATCCCCTCCTGCTGGCCTCCCTCGTCGTCCCCCTCGTGCC 120 consensus_2316#1 ------------------------------------------------------------ consensus_2316#0 ACTGGCTCCAGGATTGTGGTCATCCTCCAGGGTATGTTTACCTGAGCACCTTCGCAGCGG 180 consensus_2316#1 ------------------------------------------------------------ consensus_2316#0 CTTCGACTCCTTGGTACTCCTAGTCTCCTGCCAGCTATAGAAGGAACGAAACTTCAGGGT 240 consensus_2316#1 ------------------------------------------------------------ consensus_2316#0 TTTCGACTCTGCGCTCGCTTCGGTC-CAGTGGTTCTAGAGTCCTTCCGCTCGGAGG-CCA 298 consensus_2316#1 ---CGACTCTGCGCTCGCTTCGGTCGCAGNGGTTCTAGAGTCCTTCCGCTCGGAGGGCCA 57 ********************** *** ************************** *** consensus_2316#0 GCTGTGGTCTTTAGCCAGTGTTACTTGTTTTGGGGATTTCTTGGGAGTGTAGCGTGGCTC 358 consensus_2316#1 GCTGNGGTCTTTAGCCNGTGNTNCTTGTTTTGGGGATTTCTTGGGAGTGTAGCGNGNCTC 117 **** *********** *** * ******************************* * *** consensus_2316#0 TGCCCCCTCCCGCTGTTTGGAGTTGCGTTTTTAACCGTCGTAGTAGT-TCCTAGCTTCAA 417 consensus_2316#1 TGCCCCCTNCCGNTGTTTGGAGTTGCGNTTTTAACCGNCGTAGNAGCGTCCTAGCTTCAA 177 ******** *** ************** ********* ***** ** ************ consensus_2316#0 GTCCCCCCCTTTAGGCATAACC-AGTCTA-CTGATTGCTTTGTGTAACAAAA-CTCTTTT 474 consensus_2316#1 GNCCCCCCCTTTANGCATAANCCAGTNTAGCTGATTGCTTTGAGNAACAAAAACTCTTTT 237 * *********** ****** * *** ** ************ * ******* ******* consensus_2316#0 CTAATATATCGACGTCCA-TTCTTTTACGCGTAAAAAAAAAA------------------ 515 consensus_2316#1 CTAATATATTGACGTGCAATTCTTTTACGCGTCCACGNNAANGCNAAAACACAANANTGG 297 ********* ***** ** ************* * ** consensus_2316#0 ---------- consensus_2316#1 NACGCTCTNN 307 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||