cluster # 2316

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Oryza sativa
cluster # 2316 cluster # 2316 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2316#0 length = 515 sequences # 1

consensus_2316#1 length = 307 sequences # 1

consensusID : consensus_2316#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 515
fasta sequence

                              [CTTGATTCCCCGTGCCAGCTAAAAAACCAGGGCCTTTTTTGTTACCCGTATATAGTACTAAAAGTTCTGCTTCGTGTGTTATCCCCTCCTGCTGGCCTCCCTCGTCGTCCCCCTCGTGCCACTGGCTCCAGGATTGTGGTCATCCTCCAGGGTATGTTTACCTGAGCACCTTCGCAGCGGCTTCGACTCCTTGGTACTCCTAGTCTCCTGCCAGCTATAGAAGGAACGAAACTTCAGGGTTTTCGACTCTGCGCTCGCTTCGGTCCAGTGGTTCTAGAGTCCTTCCGCTCGGAGGCCAGCTGTGGTCTTTAGCCAGTGTTACTTGTTTTGGGGATTTCTTGGGAGTGTAGCGTGGCTCTGCCCCCTCCCGCTGTTTGGAGTTGCGTTTTTAACCGTCGTAGTAGTTCCTAGCTTCAAGTCCCCCCCTTTAGGCATAACCAGTCTACTGATTGCTTTGTGTAACAAAACTCTTTTCTAATATATCGACGTCCATTCTTTTACGCGTAAAAAAAAAA]

[+] EMBL BI798729             [CTTGATTCCCCGTGCCAGCTAAAAAACCAGGGCCTTTTTTGTTACCCGTATATAGTACTAAAAGTTCTGCTTCGTGTGTTATCCCCTCCTGCTGGCCTCCCTCGTCGTCCCCCTCGTGCCACTGGCTCCAGGATTGTGGTCATCCTCCAGGGTATGTTTACCTGAGCACCTTCGCAGCGGCTTCGACTCCTTGGTACTCCTAGTCTCCTGCCAGCTATAGAAGGAACGAAACTTCAGGGTTTTCGACTCTGCGCTCGCTTCGGTCCAGTGGTTCTAGAGTCCTTCCGCTCGGAGGCCAGCTGTGGTCTTTAGCCAGTGTTACTTGTTTTGGGGATTTCTTGGGAGTGTAGCGTGGCTCTGCCCCCTCCCGCTGTTTGGAGTTGCGTTTTTAACCGTCGTAGTAGTTCCTAGCTTCAAGTCCCCCCCTTTAGGCATAACCAGTCTACTGATTGCTTTGTGTAACAAAACTCTTTTCTAATATATCGACGTCCATTCTTTTACGCGTAAAAAAAAAA]




>consensus_2316#0
CTTGATTCCCCGTGCCAGCTAAAAAACCAGGGCCTTTTTTGTTACCCGTATATAGTACTA
AAAGTTCTGCTTCGTGTGTTATCCCCTCCTGCTGGCCTCCCTCGTCGTCCCCCTCGTGCC
ACTGGCTCCAGGATTGTGGTCATCCTCCAGGGTATGTTTACCTGAGCACCTTCGCAGCGG
CTTCGACTCCTTGGTACTCCTAGTCTCCTGCCAGCTATAGAAGGAACGAAACTTCAGGGT
TTTCGACTCTGCGCTCGCTTCGGTCCAGTGGTTCTAGAGTCCTTCCGCTCGGAGGCCAGC
TGTGGTCTTTAGCCAGTGTTACTTGTTTTGGGGATTTCTTGGGAGTGTAGCGTGGCTCTG
CCCCCTCCCGCTGTTTGGAGTTGCGTTTTTAACCGTCGTAGTAGTTCCTAGCTTCAAGTC
CCCCCCTTTAGGCATAACCAGTCTACTGATTGCTTTGTGTAACAAAACTCTTTTCTAATA
TATCGACGTCCATTCTTTTACGCGTAAAAAAAAAA

consensusID : consensus_2316#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 307
fasta sequence

                              [CGACTCTGCGCTCGCTTCGGTCGCAGNGGTTCTAGAGTCCTTCCGCTCGGAGGGCCAGCTGNGGTCTTTAGCCNGTGNTNCTTGTTTTGGGGATTTCTTGGGAGTGTAGCGNGNCTCTGCCCCCTNCCGNTGTTTGGAGTTGCGNTTTTAACCGNCGTAGNAGCGTCCTAGCTTCAAGNCCCCCCCTTTANGCATAANCCAGTNTAGCTGATTGCTTTGAGNAACAAAAACTCTTTTCTAATATATTGACGTGCAATTCTTTTACGCGTCCACGNNAANGCNAAAACACAANANTGGNACGCTCTNN]

[+] EMBL CA764999             [CGACTCTGCGCTCGCTTCGGTCGCAGNGGTTCTAGAGTCCTTCCGCTCGGAGGGCCAGCTGNGGTCTTTAGCCNGTGNTNCTTGTTTTGGGGATTTCTTGGGAGTGTAGCGNGNCTCTGCCCCCTNCCGNTGTTTGGAGTTGCGNTTTTAACCGNCGTAGNAGCGTCCTAGCTTCAAGNCCCCCCCTTTANGCATAANCCAGTNTAGCTGATTGCTTTGAGNAACAAAAACTCTTTTCTAATATATTGACGTGCAATTCTTTTACGCGTCCACGNNAANGCNAAAACACAANANTGGNACGCTCTNN]




>consensus_2316#1
CGACTCTGCGCTCGCTTCGGTCGCAGNGGTTCTAGAGTCCTTCCGCTCGGAGGGCCAGCT
GNGGTCTTTAGCCNGTGNTNCTTGTTTTGGGGATTTCTTGGGAGTGTAGCGNGNCTCTGC
CCCCTNCCGNTGTTTGGAGTTGCGNTTTTAACCGNCGTAGNAGCGTCCTAGCTTCAAGNC
CCCCCCTTTANGCATAANCCAGTNTAGCTGATTGCTTTGAGNAACAAAAACTCTTTTCTA
ATATATTGACGTGCAATTCTTTTACGCGTCCACGNNAANGCNAAAACACAANANTGGNAC
GCTCTNN

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2316#0      CTTGATTCCCCGTGCCAGCTAAAAAACCAGGGCCTTTTTTGTTACCCGTATATAGTACTA 60
consensus_2316#1      ------------------------------------------------------------
                                                                                  

consensus_2316#0      AAAGTTCTGCTTCGTGTGTTATCCCCTCCTGCTGGCCTCCCTCGTCGTCCCCCTCGTGCC 120
consensus_2316#1      ------------------------------------------------------------
                                                                                  

consensus_2316#0      ACTGGCTCCAGGATTGTGGTCATCCTCCAGGGTATGTTTACCTGAGCACCTTCGCAGCGG 180
consensus_2316#1      ------------------------------------------------------------
                                                                                  

consensus_2316#0      CTTCGACTCCTTGGTACTCCTAGTCTCCTGCCAGCTATAGAAGGAACGAAACTTCAGGGT 240
consensus_2316#1      ------------------------------------------------------------
                                                                                  

consensus_2316#0      TTTCGACTCTGCGCTCGCTTCGGTC-CAGTGGTTCTAGAGTCCTTCCGCTCGGAGG-CCA 298
consensus_2316#1      ---CGACTCTGCGCTCGCTTCGGTCGCAGNGGTTCTAGAGTCCTTCCGCTCGGAGGGCCA 57
                         ********************** *** ************************** ***

consensus_2316#0      GCTGTGGTCTTTAGCCAGTGTTACTTGTTTTGGGGATTTCTTGGGAGTGTAGCGTGGCTC 358
consensus_2316#1      GCTGNGGTCTTTAGCCNGTGNTNCTTGTTTTGGGGATTTCTTGGGAGTGTAGCGNGNCTC 117
                      **** *********** *** * ******************************* * ***

consensus_2316#0      TGCCCCCTCCCGCTGTTTGGAGTTGCGTTTTTAACCGTCGTAGTAGT-TCCTAGCTTCAA 417
consensus_2316#1      TGCCCCCTNCCGNTGTTTGGAGTTGCGNTTTTAACCGNCGTAGNAGCGTCCTAGCTTCAA 177
                      ******** *** ************** ********* ***** **  ************

consensus_2316#0      GTCCCCCCCTTTAGGCATAACC-AGTCTA-CTGATTGCTTTGTGTAACAAAA-CTCTTTT 474
consensus_2316#1      GNCCCCCCCTTTANGCATAANCCAGTNTAGCTGATTGCTTTGAGNAACAAAAACTCTTTT 237
                      * *********** ****** * *** ** ************ * ******* *******

consensus_2316#0      CTAATATATCGACGTCCA-TTCTTTTACGCGTAAAAAAAAAA------------------ 515
consensus_2316#1      CTAATATATTGACGTGCAATTCTTTTACGCGTCCACGNNAANGCNAAAACACAANANTGG 297
                      ********* ***** ** *************  *    **                   

consensus_2316#0      ----------
consensus_2316#1      NACGCTCTNN 307