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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2329#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1246 fasta sequence
[CGTCCGTTGTGGCCCCTCTTTCCCGGTGGCAACTTGACAACTCGCCGAGCAGCCGCCGCCGGCGGCCATGGACCGCGAAGCGCTCCGCATGGTGTGCTCGCGGGAGTTCTGGCGGATGGCCGTCCTGTGGACCGTCTCCCTCCTCTACTCCTACATCCTCCTCTTCTTCCTCCGCCGCGGCGCCCCCGTCCCTCGCCTCCGACCTATGCCCGAGCCCGACGACGACGCCGCTCGTCGCCGCCGCCGCCGCCCCGTCTGCGTGATTACTGGGGCGACGTCGGGGCTGGGCAGAGCGGCGGCGGCGGCGCTGGCGCGGGAGGGGTACCACGTCATCCTCGCTGGGCGTTCTTCACAATTGTTATCTGAGACTGTTCAACAAATTCGGGATCAACAACCTGATGCCCATCTTGAAGCATTTCAAATCGACTTGTCATCCTACAAGTCAATAAAGAAGTTTGAAACTTCACTGAATCAGTGGATCAAGGACTCAAATATGGAGCACTCTATTCAGCTTTTGGTCAATAACGCTGGGATCCTAGCAAAGTCATATCGAATTACAGAGGACGGTCTTGATGAAATGATTCAGGCAAACTACATTGGTCCATTTGTCCTGACCAACATTCTGTTACCATTGCTCAAGAACAGCTCAACACCTTCTCGGGTGGTTAATCTAACGTCTTTCACACACAGATGTGTGTCATAAATTAACTTGTCTGAGAAAGGATTGAGCGGAGTAAGGTTTGGTCATTGGCCAGCGAGGAGAAGCTATCTCTTAGCTTCTACTTATGAGTATACCAAATTTTGTTTACTGATGTTCTCATACGAGCTTCATCGACAACTTCACTTATCTTCTGGTGTCTCCGTCATGGCTGCGGATCCAGGTGTAGTACAGACAGGCATAATGCGGGAGCTTCCTCCATGTCTTTCTTGGCTTGCGCTTTCTGTTCTGCGCCTCCTGAATCTCCTACAACAACCTGATACGGGAGTTGATGCTGTCCTTGATGCCGCTTTGGCACCACCTGACTCATCTGGAAAGTATTTCTTTGGAGGGAAAGGAAGGACCATAACGTCTTCTCAGTTGTCATACAACGTTGAAGTGGCCAAGAAGCTATGGGCAGAATCTTTAGCATTGTTCAATGAGCTACAGAATAGAGTATGTGAACTGAGGACTAGCTGAACTAACTTGTGAAAATTATGAGGTTACTGAATTTCAGGTTTACTCTGTTCGATGGGCAATAGTTTCAGG]
[+] EMBL AK108901 [CGTCCGTTGTGGCCCCTCTTTCCCGGTGGCAACTTGACAACTCGCCGAGCAGCCGCCGCCGGCGGCCATGGACCGCGAAGCGCTCCGCATGGTGTGCTCGCGGGAGTTCTGGCGGATGGCCGTCCTGTGGACCGTCTCCCTCCTCTACTCCTACATCCTCCTCTTCTTCCTCCGCCGCGGCGCCCCCGTCCCTCGCCTCCGACCTATGCCCGAGCCCGACGACGACGCCGCTCGTCGCCGCCGCCGCCGCCCCGTCTGCGTGATTACTGGGGCGACGTCGGGGCTGGGCAGAGCGGCGGCGGCGGCGCTGGCGCGGGAGGGGTACCACGTCATCCTCGCTGGGCGTTCTTCACAATTGTTATCTGAGACTGTTCAACAAATTCGGGATCAACAACCTGATGCCCATCTTGAAGCATTTCAAATCGACTTGTCATCCTACAAGTCAATAAAGAAGTTTGAAACTTCACTGAATCAGTGGATCAAGGACTCAAATATGGAGCACTCTATTCAGCTTTTGGTCAATAACGCTGGGATCCTAGCAAAGTCATATCGAATTACAGAGGACGGTCTTGATGAAATGATTCAGGCAAACTACATTGGTCCATTTGTCCTGACCAACATTCTGTTACCATTGCTCAAGAACAGCTCAACACCTTCTCGGGTGGTTAATCTAACGTCTTTCACACACAGATGTGTGTCATAAATTAACTTGTCTGAGAAAGGATTGAGCGGAGTAAGGTTTGGTCATTGGCCAGCGAGGAGAAGCTATCTCTTAGCTTCTACTTATGAGTATACCAAATTTTGTTTACTGATGTTCTCATACGAGCTTCATCGACAACTTCACTTATCTTCTGGTGTCTCCGTCATGGCTGCGGATCCAGGTGTAGTACAGACAGGCATAATGCGGGAGCTTCCTCCATGTCTTTCTTGGCTTGCGCTTTCTGTTCTGCGCCTCCTGAATCTCCTACAACAACCTGATACGGGAGTTGATGCTGTCCTTGATGCCGCTTTGGCACCACCTGACTCATCTGGAAAGTATTTCTTTGGAGGGAAAGGAAGGACCATAACGTCTTCTCAGTTGTCATACAACGTTGAAGTGGCCAAGAAGCTATGGGCAGAATCTTTAGCATTGTTCAATGAGCTACAGAATAGAGTATGTGAACTGAGGACTAGCTGAACTAACTTGTGAAAATTATGAGGTTACTGAATTTCAGGTTTACTCTGTTCGATGGGCAATAGTTTCAGG]
consensusID : consensus_2329#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 765 fasta sequence
[CGCCGGCGGCCATGGACCGCGAAGCGCTCCGCATGGTGTGCTCGCGGGAGTTCTGGCGGATGGCCGTCCTGTGGACCGTCTCCCTCCTCTACTCCTACATCCTCCTCTTCTTCCTCCGCCGCGGCGCCCCCGTCCCTCGCCTCCGACCTATGCCCGAGCCCGACGACGACGCCGCTCGTCGCCGCCGCCGCCGCCCCGTCTGCGTGATTACTGGGGCGACGTCGGGGCTGGGCAAAGCGGCGGCGGCGGCGCTGGCGCGGGAGGGGTACCACGTCATCCTCGACTGTTCAACAAATTCGGGATCAACAACCTGATGCCCATCTTGAAGCATTTCAAATCGACTTGTCATCCTACAAGTCAATAAAGAAGTTTGAAACTTCACTGAATCAGTGGATCAAGGACTCAAATATGGAGCACTCTATTCAGCTTTTGGTCAATAACGCTGGGATCCTAGCAAAGTCATATCGAATTACAGAGGACGGTCTTGATGAAATGATTCAGGCAAACTACATTGGTCCATTTGTCCTGACCAACATTCTGTTACCATTGCTCAAGAACAGCTCAACACCTTCTCGGGTGGTTAATCTAACGTCTTTCACACACAGATGTGTGTCAGAAATTAACTTGTCTGAGAAAGGATTGAGCGGAGTAAGGTTTGGTCATTGGCCAGCGAGGAGAAGCTATCTCTTAGCTTCTACTTATGAGTATACCAAATTTTGTTTACTGATGTTCTCATACGAACTTCATCGACAACTTCACTTATCT]
[+] EMBL CB656037 [CGCCGGCGGCCATGGACCGCGAAGCGCTCCGCATGGTGTGCTCGCGGGAGTTCTGGCGGATGGCCGTCCTGTGGACCGTCTCCCTCCTCTACTCCTACATCCTCCTCTTCTTCCTCCGCCGCGGCGCCCCCGTCCCTCGCCTCCGACCTATGCCCGAGCCCGACGACGACGCCGCTCGTCGCCGCCGCCGCCGCCCCGTCTGCGTGATTACTGGGGCGACGTCGGGGCTGGGCAAAGCGGCGGCGGCGGCGCTGGCGCGGGAGGGGTACCACGTCATCCTCGACTGTTCAACAAATTCGGGATCAACAACCTGATGCCCATCTTGAAGCATTTCAAATCGACTTGTCATCCTACAAGTCAATAAAGAAGTTTGAAACTTCACTGAATCAGTGGATCAAGGACTCAAATATGGAGCACTCTATTCAGCTTTTGGTCAATAACGCTGGGATCCTAGCAAAGTCATATCGAATTACAGAGGACGGTCTTGATGAAATGATTCAGGCAAACTACATTGGTCCATTTGTCCTGACCAACATTCTGTTACCATTGCTCAAGAACAGCTCAACACCTTCTCGGGTGGTTAATCTAACGTCTTTCACACACAGATGTGTGTCAGAAATTAACTTGTCTGAGAAAGGATTGAGCGGAGTAAGGTTTGGTCATTGGCCAGCGAGGAGAAGCTATCTCTTAGCTTCTACTTATGAGTATACCAAATTTTGTTTACTGATGTTCTCATACGAACTTCATCGACAACTTCACTTATCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2329#0 CGTCCGTTGTGGCCCCTCTTTCCCGGTGGCAACTTGACAACTCGCCGAGCAGCCGCCGCC 60
consensus_2329#1 --------------------------------------------------------CGCC 4
****
consensus_2329#0 GGCGGCCATGGACCGCGAAGCGCTCCGCATGGTGTGCTCGCGGGAGTTCTGGCGGATGGC 120
consensus_2329#1 GGCGGCCATGGACCGCGAAGCGCTCCGCATGGTGTGCTCGCGGGAGTTCTGGCGGATGGC 64
************************************************************
consensus_2329#0 CGTCCTGTGGACCGTCTCCCTCCTCTACTCCTACATCCTCCTCTTCTTCCTCCGCCGCGG 180
consensus_2329#1 CGTCCTGTGGACCGTCTCCCTCCTCTACTCCTACATCCTCCTCTTCTTCCTCCGCCGCGG 124
************************************************************
consensus_2329#0 CGCCCCCGTCCCTCGCCTCCGACCTATGCCCGAGCCCGACGACGACGCCGCTCGTCGCCG 240
consensus_2329#1 CGCCCCCGTCCCTCGCCTCCGACCTATGCCCGAGCCCGACGACGACGCCGCTCGTCGCCG 184
************************************************************
consensus_2329#0 CCGCCGCCGCCCCGTCTGCGTGATTACTGGGGCGACGTCGGGGCTGGGCAGAGCGGCGGC 300
consensus_2329#1 CCGCCGCCGCCCCGTCTGCGTGATTACTGGGGCGACGTCGGGGCTGGGCAAAGCGGCGGC 244
************************************************** *********
consensus_2329#0 GGCGGCGCTGGCGCGGGAGGGGTACCACGTCATCCTCGCTGGGCGTTCTTCACAATTGTT 360
consensus_2329#1 GGCGGCGCTGGCGCGGGAGGGGTACCACGTCATCCTCG---------------------- 282
**************************************
consensus_2329#0 ATCTGAGACTGTTCAACAAATTCGGGATCAACAACCTGATGCCCATCTTGAAGCATTTCA 420
consensus_2329#1 -------ACTGTTCAACAAATTCGGGATCAACAACCTGATGCCCATCTTGAAGCATTTCA 335
*****************************************************
consensus_2329#0 AATCGACTTGTCATCCTACAAGTCAATAAAGAAGTTTGAAACTTCACTGAATCAGTGGAT 480
consensus_2329#1 AATCGACTTGTCATCCTACAAGTCAATAAAGAAGTTTGAAACTTCACTGAATCAGTGGAT 395
************************************************************
consensus_2329#0 CAAGGACTCAAATATGGAGCACTCTATTCAGCTTTTGGTCAATAACGCTGGGATCCTAGC 540
consensus_2329#1 CAAGGACTCAAATATGGAGCACTCTATTCAGCTTTTGGTCAATAACGCTGGGATCCTAGC 455
************************************************************
consensus_2329#0 AAAGTCATATCGAATTACAGAGGACGGTCTTGATGAAATGATTCAGGCAAACTACATTGG 600
consensus_2329#1 AAAGTCATATCGAATTACAGAGGACGGTCTTGATGAAATGATTCAGGCAAACTACATTGG 515
************************************************************
consensus_2329#0 TCCATTTGTCCTGACCAACATTCTGTTACCATTGCTCAAGAACAGCTCAACACCTTCTCG 660
consensus_2329#1 TCCATTTGTCCTGACCAACATTCTGTTACCATTGCTCAAGAACAGCTCAACACCTTCTCG 575
************************************************************
consensus_2329#0 GGTGGTTAATCTAACGTCTTTCACACACAGATGTGTGTCATAAATTAACTTGTCTGAGAA 720
consensus_2329#1 GGTGGTTAATCTAACGTCTTTCACACACAGATGTGTGTCAGAAATTAACTTGTCTGAGAA 635
**************************************** *******************
consensus_2329#0 AGGATTGAGCGGAGTAAGGTTTGGTCATTGGCCAGCGAGGAGAAGCTATCTCTTAGCTTC 780
consensus_2329#1 AGGATTGAGCGGAGTAAGGTTTGGTCATTGGCCAGCGAGGAGAAGCTATCTCTTAGCTTC 695
************************************************************
consensus_2329#0 TACTTATGAGTATACCAAATTTTGTTTACTGATGTTCTCATACGAGCTTCATCGACAACT 840
consensus_2329#1 TACTTATGAGTATACCAAATTTTGTTTACTGATGTTCTCATACGAACTTCATCGACAACT 755
********************************************* **************
consensus_2329#0 TCACTTATCTTCTGGTGTCTCCGTCATGGCTGCGGATCCAGGTGTAGTACAGACAGGCAT 900
consensus_2329#1 TCACTTATCT-------------------------------------------------- 765
**********
consensus_2329#0 AATGCGGGAGCTTCCTCCATGTCTTTCTTGGCTTGCGCTTTCTGTTCTGCGCCTCCTGAA 960
consensus_2329#1 ------------------------------------------------------------
consensus_2329#0 TCTCCTACAACAACCTGATACGGGAGTTGATGCTGTCCTTGATGCCGCTTTGGCACCACC 1020
consensus_2329#1 ------------------------------------------------------------
consensus_2329#0 TGACTCATCTGGAAAGTATTTCTTTGGAGGGAAAGGAAGGACCATAACGTCTTCTCAGTT 1080
consensus_2329#1 ------------------------------------------------------------
consensus_2329#0 GTCATACAACGTTGAAGTGGCCAAGAAGCTATGGGCAGAATCTTTAGCATTGTTCAATGA 1140
consensus_2329#1 ------------------------------------------------------------
consensus_2329#0 GCTACAGAATAGAGTATGTGAACTGAGGACTAGCTGAACTAACTTGTGAAAATTATGAGG 1200
consensus_2329#1 ------------------------------------------------------------
consensus_2329#0 TTACTGAATTTCAGGTTTACTCTGTTCGATGGGCAATAGTTTCAGG 1246
consensus_2329#1 ----------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||