These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2329#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1246 fasta sequence [CGTCCGTTGTGGCCCCTCTTTCCCGGTGGCAACTTGACAACTCGCCGAGCAGCCGCCGCCGGCGGCCATGGACCGCGAAGCGCTCCGCATGGTGTGCTCGCGGGAGTTCTGGCGGATGGCCGTCCTGTGGACCGTCTCCCTCCTCTACTCCTACATCCTCCTCTTCTTCCTCCGCCGCGGCGCCCCCGTCCCTCGCCTCCGACCTATGCCCGAGCCCGACGACGACGCCGCTCGTCGCCGCCGCCGCCGCCCCGTCTGCGTGATTACTGGGGCGACGTCGGGGCTGGGCAGAGCGGCGGCGGCGGCGCTGGCGCGGGAGGGGTACCACGTCATCCTCGCTGGGCGTTCTTCACAATTGTTATCTGAGACTGTTCAACAAATTCGGGATCAACAACCTGATGCCCATCTTGAAGCATTTCAAATCGACTTGTCATCCTACAAGTCAATAAAGAAGTTTGAAACTTCACTGAATCAGTGGATCAAGGACTCAAATATGGAGCACTCTATTCAGCTTTTGGTCAATAACGCTGGGATCCTAGCAAAGTCATATCGAATTACAGAGGACGGTCTTGATGAAATGATTCAGGCAAACTACATTGGTCCATTTGTCCTGACCAACATTCTGTTACCATTGCTCAAGAACAGCTCAACACCTTCTCGGGTGGTTAATCTAACGTCTTTCACACACAGATGTGTGTCATAAATTAACTTGTCTGAGAAAGGATTGAGCGGAGTAAGGTTTGGTCATTGGCCAGCGAGGAGAAGCTATCTCTTAGCTTCTACTTATGAGTATACCAAATTTTGTTTACTGATGTTCTCATACGAGCTTCATCGACAACTTCACTTATCTTCTGGTGTCTCCGTCATGGCTGCGGATCCAGGTGTAGTACAGACAGGCATAATGCGGGAGCTTCCTCCATGTCTTTCTTGGCTTGCGCTTTCTGTTCTGCGCCTCCTGAATCTCCTACAACAACCTGATACGGGAGTTGATGCTGTCCTTGATGCCGCTTTGGCACCACCTGACTCATCTGGAAAGTATTTCTTTGGAGGGAAAGGAAGGACCATAACGTCTTCTCAGTTGTCATACAACGTTGAAGTGGCCAAGAAGCTATGGGCAGAATCTTTAGCATTGTTCAATGAGCTACAGAATAGAGTATGTGAACTGAGGACTAGCTGAACTAACTTGTGAAAATTATGAGGTTACTGAATTTCAGGTTTACTCTGTTCGATGGGCAATAGTTTCAGG] [+] EMBL AK108901 [CGTCCGTTGTGGCCCCTCTTTCCCGGTGGCAACTTGACAACTCGCCGAGCAGCCGCCGCCGGCGGCCATGGACCGCGAAGCGCTCCGCATGGTGTGCTCGCGGGAGTTCTGGCGGATGGCCGTCCTGTGGACCGTCTCCCTCCTCTACTCCTACATCCTCCTCTTCTTCCTCCGCCGCGGCGCCCCCGTCCCTCGCCTCCGACCTATGCCCGAGCCCGACGACGACGCCGCTCGTCGCCGCCGCCGCCGCCCCGTCTGCGTGATTACTGGGGCGACGTCGGGGCTGGGCAGAGCGGCGGCGGCGGCGCTGGCGCGGGAGGGGTACCACGTCATCCTCGCTGGGCGTTCTTCACAATTGTTATCTGAGACTGTTCAACAAATTCGGGATCAACAACCTGATGCCCATCTTGAAGCATTTCAAATCGACTTGTCATCCTACAAGTCAATAAAGAAGTTTGAAACTTCACTGAATCAGTGGATCAAGGACTCAAATATGGAGCACTCTATTCAGCTTTTGGTCAATAACGCTGGGATCCTAGCAAAGTCATATCGAATTACAGAGGACGGTCTTGATGAAATGATTCAGGCAAACTACATTGGTCCATTTGTCCTGACCAACATTCTGTTACCATTGCTCAAGAACAGCTCAACACCTTCTCGGGTGGTTAATCTAACGTCTTTCACACACAGATGTGTGTCATAAATTAACTTGTCTGAGAAAGGATTGAGCGGAGTAAGGTTTGGTCATTGGCCAGCGAGGAGAAGCTATCTCTTAGCTTCTACTTATGAGTATACCAAATTTTGTTTACTGATGTTCTCATACGAGCTTCATCGACAACTTCACTTATCTTCTGGTGTCTCCGTCATGGCTGCGGATCCAGGTGTAGTACAGACAGGCATAATGCGGGAGCTTCCTCCATGTCTTTCTTGGCTTGCGCTTTCTGTTCTGCGCCTCCTGAATCTCCTACAACAACCTGATACGGGAGTTGATGCTGTCCTTGATGCCGCTTTGGCACCACCTGACTCATCTGGAAAGTATTTCTTTGGAGGGAAAGGAAGGACCATAACGTCTTCTCAGTTGTCATACAACGTTGAAGTGGCCAAGAAGCTATGGGCAGAATCTTTAGCATTGTTCAATGAGCTACAGAATAGAGTATGTGAACTGAGGACTAGCTGAACTAACTTGTGAAAATTATGAGGTTACTGAATTTCAGGTTTACTCTGTTCGATGGGCAATAGTTTCAGG] consensusID : consensus_2329#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 765 fasta sequence [CGCCGGCGGCCATGGACCGCGAAGCGCTCCGCATGGTGTGCTCGCGGGAGTTCTGGCGGATGGCCGTCCTGTGGACCGTCTCCCTCCTCTACTCCTACATCCTCCTCTTCTTCCTCCGCCGCGGCGCCCCCGTCCCTCGCCTCCGACCTATGCCCGAGCCCGACGACGACGCCGCTCGTCGCCGCCGCCGCCGCCCCGTCTGCGTGATTACTGGGGCGACGTCGGGGCTGGGCAAAGCGGCGGCGGCGGCGCTGGCGCGGGAGGGGTACCACGTCATCCTCGACTGTTCAACAAATTCGGGATCAACAACCTGATGCCCATCTTGAAGCATTTCAAATCGACTTGTCATCCTACAAGTCAATAAAGAAGTTTGAAACTTCACTGAATCAGTGGATCAAGGACTCAAATATGGAGCACTCTATTCAGCTTTTGGTCAATAACGCTGGGATCCTAGCAAAGTCATATCGAATTACAGAGGACGGTCTTGATGAAATGATTCAGGCAAACTACATTGGTCCATTTGTCCTGACCAACATTCTGTTACCATTGCTCAAGAACAGCTCAACACCTTCTCGGGTGGTTAATCTAACGTCTTTCACACACAGATGTGTGTCAGAAATTAACTTGTCTGAGAAAGGATTGAGCGGAGTAAGGTTTGGTCATTGGCCAGCGAGGAGAAGCTATCTCTTAGCTTCTACTTATGAGTATACCAAATTTTGTTTACTGATGTTCTCATACGAACTTCATCGACAACTTCACTTATCT] [+] EMBL CB656037 [CGCCGGCGGCCATGGACCGCGAAGCGCTCCGCATGGTGTGCTCGCGGGAGTTCTGGCGGATGGCCGTCCTGTGGACCGTCTCCCTCCTCTACTCCTACATCCTCCTCTTCTTCCTCCGCCGCGGCGCCCCCGTCCCTCGCCTCCGACCTATGCCCGAGCCCGACGACGACGCCGCTCGTCGCCGCCGCCGCCGCCCCGTCTGCGTGATTACTGGGGCGACGTCGGGGCTGGGCAAAGCGGCGGCGGCGGCGCTGGCGCGGGAGGGGTACCACGTCATCCTCGACTGTTCAACAAATTCGGGATCAACAACCTGATGCCCATCTTGAAGCATTTCAAATCGACTTGTCATCCTACAAGTCAATAAAGAAGTTTGAAACTTCACTGAATCAGTGGATCAAGGACTCAAATATGGAGCACTCTATTCAGCTTTTGGTCAATAACGCTGGGATCCTAGCAAAGTCATATCGAATTACAGAGGACGGTCTTGATGAAATGATTCAGGCAAACTACATTGGTCCATTTGTCCTGACCAACATTCTGTTACCATTGCTCAAGAACAGCTCAACACCTTCTCGGGTGGTTAATCTAACGTCTTTCACACACAGATGTGTGTCAGAAATTAACTTGTCTGAGAAAGGATTGAGCGGAGTAAGGTTTGGTCATTGGCCAGCGAGGAGAAGCTATCTCTTAGCTTCTACTTATGAGTATACCAAATTTTGTTTACTGATGTTCTCATACGAACTTCATCGACAACTTCACTTATCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2329#0 CGTCCGTTGTGGCCCCTCTTTCCCGGTGGCAACTTGACAACTCGCCGAGCAGCCGCCGCC 60 consensus_2329#1 --------------------------------------------------------CGCC 4 **** consensus_2329#0 GGCGGCCATGGACCGCGAAGCGCTCCGCATGGTGTGCTCGCGGGAGTTCTGGCGGATGGC 120 consensus_2329#1 GGCGGCCATGGACCGCGAAGCGCTCCGCATGGTGTGCTCGCGGGAGTTCTGGCGGATGGC 64 ************************************************************ consensus_2329#0 CGTCCTGTGGACCGTCTCCCTCCTCTACTCCTACATCCTCCTCTTCTTCCTCCGCCGCGG 180 consensus_2329#1 CGTCCTGTGGACCGTCTCCCTCCTCTACTCCTACATCCTCCTCTTCTTCCTCCGCCGCGG 124 ************************************************************ consensus_2329#0 CGCCCCCGTCCCTCGCCTCCGACCTATGCCCGAGCCCGACGACGACGCCGCTCGTCGCCG 240 consensus_2329#1 CGCCCCCGTCCCTCGCCTCCGACCTATGCCCGAGCCCGACGACGACGCCGCTCGTCGCCG 184 ************************************************************ consensus_2329#0 CCGCCGCCGCCCCGTCTGCGTGATTACTGGGGCGACGTCGGGGCTGGGCAGAGCGGCGGC 300 consensus_2329#1 CCGCCGCCGCCCCGTCTGCGTGATTACTGGGGCGACGTCGGGGCTGGGCAAAGCGGCGGC 244 ************************************************** ********* consensus_2329#0 GGCGGCGCTGGCGCGGGAGGGGTACCACGTCATCCTCGCTGGGCGTTCTTCACAATTGTT 360 consensus_2329#1 GGCGGCGCTGGCGCGGGAGGGGTACCACGTCATCCTCG---------------------- 282 ************************************** consensus_2329#0 ATCTGAGACTGTTCAACAAATTCGGGATCAACAACCTGATGCCCATCTTGAAGCATTTCA 420 consensus_2329#1 -------ACTGTTCAACAAATTCGGGATCAACAACCTGATGCCCATCTTGAAGCATTTCA 335 ***************************************************** consensus_2329#0 AATCGACTTGTCATCCTACAAGTCAATAAAGAAGTTTGAAACTTCACTGAATCAGTGGAT 480 consensus_2329#1 AATCGACTTGTCATCCTACAAGTCAATAAAGAAGTTTGAAACTTCACTGAATCAGTGGAT 395 ************************************************************ consensus_2329#0 CAAGGACTCAAATATGGAGCACTCTATTCAGCTTTTGGTCAATAACGCTGGGATCCTAGC 540 consensus_2329#1 CAAGGACTCAAATATGGAGCACTCTATTCAGCTTTTGGTCAATAACGCTGGGATCCTAGC 455 ************************************************************ consensus_2329#0 AAAGTCATATCGAATTACAGAGGACGGTCTTGATGAAATGATTCAGGCAAACTACATTGG 600 consensus_2329#1 AAAGTCATATCGAATTACAGAGGACGGTCTTGATGAAATGATTCAGGCAAACTACATTGG 515 ************************************************************ consensus_2329#0 TCCATTTGTCCTGACCAACATTCTGTTACCATTGCTCAAGAACAGCTCAACACCTTCTCG 660 consensus_2329#1 TCCATTTGTCCTGACCAACATTCTGTTACCATTGCTCAAGAACAGCTCAACACCTTCTCG 575 ************************************************************ consensus_2329#0 GGTGGTTAATCTAACGTCTTTCACACACAGATGTGTGTCATAAATTAACTTGTCTGAGAA 720 consensus_2329#1 GGTGGTTAATCTAACGTCTTTCACACACAGATGTGTGTCAGAAATTAACTTGTCTGAGAA 635 **************************************** ******************* consensus_2329#0 AGGATTGAGCGGAGTAAGGTTTGGTCATTGGCCAGCGAGGAGAAGCTATCTCTTAGCTTC 780 consensus_2329#1 AGGATTGAGCGGAGTAAGGTTTGGTCATTGGCCAGCGAGGAGAAGCTATCTCTTAGCTTC 695 ************************************************************ consensus_2329#0 TACTTATGAGTATACCAAATTTTGTTTACTGATGTTCTCATACGAGCTTCATCGACAACT 840 consensus_2329#1 TACTTATGAGTATACCAAATTTTGTTTACTGATGTTCTCATACGAACTTCATCGACAACT 755 ********************************************* ************** consensus_2329#0 TCACTTATCTTCTGGTGTCTCCGTCATGGCTGCGGATCCAGGTGTAGTACAGACAGGCAT 900 consensus_2329#1 TCACTTATCT-------------------------------------------------- 765 ********** consensus_2329#0 AATGCGGGAGCTTCCTCCATGTCTTTCTTGGCTTGCGCTTTCTGTTCTGCGCCTCCTGAA 960 consensus_2329#1 ------------------------------------------------------------ consensus_2329#0 TCTCCTACAACAACCTGATACGGGAGTTGATGCTGTCCTTGATGCCGCTTTGGCACCACC 1020 consensus_2329#1 ------------------------------------------------------------ consensus_2329#0 TGACTCATCTGGAAAGTATTTCTTTGGAGGGAAAGGAAGGACCATAACGTCTTCTCAGTT 1080 consensus_2329#1 ------------------------------------------------------------ consensus_2329#0 GTCATACAACGTTGAAGTGGCCAAGAAGCTATGGGCAGAATCTTTAGCATTGTTCAATGA 1140 consensus_2329#1 ------------------------------------------------------------ consensus_2329#0 GCTACAGAATAGAGTATGTGAACTGAGGACTAGCTGAACTAACTTGTGAAAATTATGAGG 1200 consensus_2329#1 ------------------------------------------------------------ consensus_2329#0 TTACTGAATTTCAGGTTTACTCTGTTCGATGGGCAATAGTTTCAGG 1246 consensus_2329#1 ---------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||