Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 2339 cluster # 2339       Sequences # 2       consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2339#0 length = 2406 sequences # 1  
 consensus_2339#1 length = 678 sequences # 1  
consensusID : consensus_2339#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 2406
fasta sequence 
                              [CGCCTCCGCCTCCTCCCCCTCCATCGCCGGCGGCCGCTTCTAGCCGGAGAGAAGAAGGCATGCCGCGGACGAGCGTGGTCGAGAGCCCCGGCTGCCCGCCGCTCCGGGCCCTCACCACCGACATCCTCGGCCTCATCAAAGTCGTGGAGGCCCGCACGAAGCCGGCGGGCGTCGCCAAGGTCGTCGAGACGTGGGGCGCGCCCGACGCGCCCCGCGCCGTCCTCGCCGCCTCGCTCGCCGACCGCGCCGTCGACCCCGTTTTGGCCGTGGCGCGGAAGAACGGCGTGGTTGAGCTGCTGAATCCACTGAATGGGGAGACTCTCGCAGGCGTCAACGCTGCTGCTGGGCGGGCGGCACCGGCTGATAGTTCTGCAGAAGAGGACCCCTTAGCCACGCTGCATCTCTTCAGAAGACATGCGCTGGACTCATCCATGTTAGGCACATTTCTTGCTTGTACAGAGAAGGGGAAAGCATATGTCAAGTCTGTCGCAAAGGAAAATGCATCCTCGGACATGGCTGTTGGGCCATCAAGCTCATGGGATGTGAGCAATTCGGGTACAGTGCAATTTTCTTCAGTGGATGCTGGTGAAAGCTACGCGATGTTCGGAGGGAAAGGAATAGAAGTCAATTTGTGGGATATCACATCTTGTAGTAAGATATGGTCTGCCAAGTCTCCTCGAGGCAACAGTCTTCAGATATTCACTGCACCTTGGTTCACTGCTGGAACTTTTTTGTGCAAGGATGACCATCGTAAAATTGTAGCCTGCACAAATAATCATCAGGTTCGCTTATATGACACTGCTTCCCAAAGAAGGCCTGTAATTTCAGTTGATTTTAGGGAGTCACCAATCAAGGCAGTTGCTGAGGACCCAAATGGACATGCTGTCTACATTGGTACAGGAAGAGGGGACCTTGCTTCCTTTGACATGAGAACAGGTATTATATGATAGTAGCTGGTGTGTGATAATTCTTGCTGATGGCACTTGGAAGTCAAAATACATTCTGAATTATATTTTCAGAGTTGTAGCTTAGTTTGAATTTTGTATCTAGTATACTATAGTTCAAATAAAAATCTCTTTTCATTTTCGTACTCTAAAGTTCACTCTGGCATGTGTATTTCATTGTACTATTTTTTGGCTACCATGCTCTGATGCTTACATAGGTGGTACAACATTGGTTGTTTATTTATTTTCCTGATCGATTCATAGTTAGTTCATCATGTGCTATATGGATACATTTAACTGCCTGGAGAAGTTTTATTTAAATTTAACTTAATATTCTGCAATGAGCTTATGCATCATGCACTTTTTTGGAGGAACAGAGAAAACAAATATGCATCTCTGTGGGTTTCCAGGAACATCAACTGTGAATCAAAACCTTCGGTTGAATATTCTTGCTAAAAATGCACCTCCTCAATTGATTCCTGTGTACATCCCTCAACTATAGCATGAATAAAGTTGTGCTGTTATGGTTCTTGTACTAACCTGAGCAAATATGCCAACAAATTTTCAGGGGATTTGAGACTACTAAACTATCTGTGAGTGATATTGAAATACCAGATAAATTGGTTTCAATTCAGGCGTTAGAAAGATATCTTGTTCATGTCCCTTATCAGATATCAAAAGATGTTTGATTATTGTATGCTTACAACATTCTAGATTATATTCTATGTAAATTCCTTACACTTTGCAATCGGTATTCACTTTTTAGTTCTTTTTAATGTATCTATTTACAGAATTAACTTTAGCTTGCACCCTTTTCCCAGGAAAACTACTTGGTTGCTTTGCTGGTAAATGCAGTGGAAGTATTAGATCTATAGTTAGACATCCAGAGCTACCTTTGATAGCATCTTGTGGACTGGACAGTTACTTACGCATCTGGGACACAAATACAAGGCAGCTGCTCTCTGCGGTCTTCCTCAAGCAGCACCTGACAGCTGTGGTTATTGATTCACATTTCTCCACTGAAGAACTCGAGGAGACTAAATCCAAGCAGCCAGATCCAGTTGGGGCAGAAGTTAGAAAGGAAAGAAAGGAAAAGAAGAATAGAACGAGTGAAATGGATGAAGACGAAACTAGAATGCTCGACCATGATGACAGTGATTCTGAAATGCACACCTCAAAGAGAAAAAAATCTGGTGAAAAAAGCAAAGGAATGAAAAAGAAAAGCAAGAAGCAGCAAGTCGCATAGATAGGACACACAACACTGGAGTCAGTGTTGACCAGTTTTGACTTTTTGACTAAGGTGCTTTGCCCTTCACTCGATTTTGTACAATGAATATCATTTGTATTAGAGTTTATTCGAACTCGAACAATAGCACTTATCTGGATTCTCAATTCTTCAAATACTTGCCGGGCCAATTAAGTATTTTACTATGCCTTCTGAGCAATATAAAAGAAATGGCGT]

[+] EMBL AK073959             [CGCCTCCGCCTCCTCCCCCTCCATCGCCGGCGGCCGCTTCTAGCCGGAGAGAAGAAGGCATGCCGCGGACGAGCGTGGTCGAGAGCCCCGGCTGCCCGCCGCTCCGGGCCCTCACCACCGACATCCTCGGCCTCATCAAAGTCGTGGAGGCCCGCACGAAGCCGGCGGGCGTCGCCAAGGTCGTCGAGACGTGGGGCGCGCCCGACGCGCCCCGCGCCGTCCTCGCCGCCTCGCTCGCCGACCGCGCCGTCGACCCCGTTTTGGCCGTGGCGCGGAAGAACGGCGTGGTTGAGCTGCTGAATCCACTGAATGGGGAGACTCTCGCAGGCGTCAACGCTGCTGCTGGGCGGGCGGCACCGGCTGATAGTTCTGCAGAAGAGGACCCCTTAGCCACGCTGCATCTCTTCAGAAGACATGCGCTGGACTCATCCATGTTAGGCACATTTCTTGCTTGTACAGAGAAGGGGAAAGCATATGTCAAGTCTGTCGCAAAGGAAAATGCATCCTCGGACATGGCTGTTGGGCCATCAAGCTCATGGGATGTGAGCAATTCGGGTACAGTGCAATTTTCTTCAGTGGATGCTGGTGAAAGCTACGCGATGTTCGGAGGGAAAGGAATAGAAGTCAATTTGTGGGATATCACATCTTGTAGTAAGATATGGTCTGCCAAGTCTCCTCGAGGCAACAGTCTTCAGATATTCACTGCACCTTGGTTCACTGCTGGAACTTTTTTGTGCAAGGATGACCATCGTAAAATTGTAGCCTGCACAAATAATCATCAGGTTCGCTTATATGACACTGCTTCCCAAAGAAGGCCTGTAATTTCAGTTGATTTTAGGGAGTCACCAATCAAGGCAGTTGCTGAGGACCCAAATGGACATGCTGTCTACATTGGTACAGGAAGAGGGGACCTTGCTTCCTTTGACATGAGAACAGGTATTATATGATAGTAGCTGGTGTGTGATAATTCTTGCTGATGGCACTTGGAAGTCAAAATACATTCTGAATTATATTTTCAGAGTTGTAGCTTAGTTTGAATTTTGTATCTAGTATACTATAGTTCAAATAAAAATCTCTTTTCATTTTCGTACTCTAAAGTTCACTCTGGCATGTGTATTTCATTGTACTATTTTTTGGCTACCATGCTCTGATGCTTACATAGGTGGTACAACATTGGTTGTTTATTTATTTTCCTGATCGATTCATAGTTAGTTCATCATGTGCTATATGGATACATTTAACTGCCTGGAGAAGTTTTATTTAAATTTAACTTAATATTCTGCAATGAGCTTATGCATCATGCACTTTTTTGGAGGAACAGAGAAAACAAATATGCATCTCTGTGGGTTTCCAGGAACATCAACTGTGAATCAAAACCTTCGGTTGAATATTCTTGCTAAAAATGCACCTCCTCAATTGATTCCTGTGTACATCCCTCAACTATAGCATGAATAAAGTTGTGCTGTTATGGTTCTTGTACTAACCTGAGCAAATATGCCAACAAATTTTCAGGGGATTTGAGACTACTAAACTATCTGTGAGTGATATTGAAATACCAGATAAATTGGTTTCAATTCAGGCGTTAGAAAGATATCTTGTTCATGTCCCTTATCAGATATCAAAAGATGTTTGATTATTGTATGCTTACAACATTCTAGATTATATTCTATGTAAATTCCTTACACTTTGCAATCGGTATTCACTTTTTAGTTCTTTTTAATGTATCTATTTACAGAATTAACTTTAGCTTGCACCCTTTTCCCAGGAAAACTACTTGGTTGCTTTGCTGGTAAATGCAGTGGAAGTATTAGATCTATAGTTAGACATCCAGAGCTACCTTTGATAGCATCTTGTGGACTGGACAGTTACTTACGCATCTGGGACACAAATACAAGGCAGCTGCTCTCTGCGGTCTTCCTCAAGCAGCACCTGACAGCTGTGGTTATTGATTCACATTTCTCCACTGAAGAACTCGAGGAGACTAAATCCAAGCAGCCAGATCCAGTTGGGGCAGAAGTTAGAAAGGAAAGAAAGGAAAAGAAGAATAGAACGAGTGAAATGGATGAAGACGAAACTAGAATGCTCGACCATGATGACAGTGATTCTGAAATGCACACCTCAAAGAGAAAAAAATCTGGTGAAAAAAGCAAAGGAATGAAAAAGAAAAGCAAGAAGCAGCAAGTCGCATAGATAGGACACACAACACTGGAGTCAGTGTTGACCAGTTTTGACTTTTTGACTAAGGTGCTTTGCCCTTCACTCGATTTTGTACAATGAATATCATTTGTATTAGAGTTTATTCGAACTCGAACAATAGCACTTATCTGGATTCTCAATTCTTCAAATACTTGCCGGGCCAATTAAGTATTTTACTATGCCTTCTGAGCAATATAAAAGAAATGGCGT]




>consensus_2339#0
CGCCTCCGCCTCCTCCCCCTCCATCGCCGGCGGCCGCTTCTAGCCGGAGAGAAGAAGGCA
TGCCGCGGACGAGCGTGGTCGAGAGCCCCGGCTGCCCGCCGCTCCGGGCCCTCACCACCG
ACATCCTCGGCCTCATCAAAGTCGTGGAGGCCCGCACGAAGCCGGCGGGCGTCGCCAAGG
TCGTCGAGACGTGGGGCGCGCCCGACGCGCCCCGCGCCGTCCTCGCCGCCTCGCTCGCCG
ACCGCGCCGTCGACCCCGTTTTGGCCGTGGCGCGGAAGAACGGCGTGGTTGAGCTGCTGA
ATCCACTGAATGGGGAGACTCTCGCAGGCGTCAACGCTGCTGCTGGGCGGGCGGCACCGG
CTGATAGTTCTGCAGAAGAGGACCCCTTAGCCACGCTGCATCTCTTCAGAAGACATGCGC
TGGACTCATCCATGTTAGGCACATTTCTTGCTTGTACAGAGAAGGGGAAAGCATATGTCA
AGTCTGTCGCAAAGGAAAATGCATCCTCGGACATGGCTGTTGGGCCATCAAGCTCATGGG
ATGTGAGCAATTCGGGTACAGTGCAATTTTCTTCAGTGGATGCTGGTGAAAGCTACGCGA
TGTTCGGAGGGAAAGGAATAGAAGTCAATTTGTGGGATATCACATCTTGTAGTAAGATAT
GGTCTGCCAAGTCTCCTCGAGGCAACAGTCTTCAGATATTCACTGCACCTTGGTTCACTG
CTGGAACTTTTTTGTGCAAGGATGACCATCGTAAAATTGTAGCCTGCACAAATAATCATC
AGGTTCGCTTATATGACACTGCTTCCCAAAGAAGGCCTGTAATTTCAGTTGATTTTAGGG
AGTCACCAATCAAGGCAGTTGCTGAGGACCCAAATGGACATGCTGTCTACATTGGTACAG
GAAGAGGGGACCTTGCTTCCTTTGACATGAGAACAGGTATTATATGATAGTAGCTGGTGT
GTGATAATTCTTGCTGATGGCACTTGGAAGTCAAAATACATTCTGAATTATATTTTCAGA
GTTGTAGCTTAGTTTGAATTTTGTATCTAGTATACTATAGTTCAAATAAAAATCTCTTTT
CATTTTCGTACTCTAAAGTTCACTCTGGCATGTGTATTTCATTGTACTATTTTTTGGCTA
CCATGCTCTGATGCTTACATAGGTGGTACAACATTGGTTGTTTATTTATTTTCCTGATCG
ATTCATAGTTAGTTCATCATGTGCTATATGGATACATTTAACTGCCTGGAGAAGTTTTAT
TTAAATTTAACTTAATATTCTGCAATGAGCTTATGCATCATGCACTTTTTTGGAGGAACA
GAGAAAACAAATATGCATCTCTGTGGGTTTCCAGGAACATCAACTGTGAATCAAAACCTT
CGGTTGAATATTCTTGCTAAAAATGCACCTCCTCAATTGATTCCTGTGTACATCCCTCAA
CTATAGCATGAATAAAGTTGTGCTGTTATGGTTCTTGTACTAACCTGAGCAAATATGCCA
ACAAATTTTCAGGGGATTTGAGACTACTAAACTATCTGTGAGTGATATTGAAATACCAGA
TAAATTGGTTTCAATTCAGGCGTTAGAAAGATATCTTGTTCATGTCCCTTATCAGATATC
AAAAGATGTTTGATTATTGTATGCTTACAACATTCTAGATTATATTCTATGTAAATTCCT
TACACTTTGCAATCGGTATTCACTTTTTAGTTCTTTTTAATGTATCTATTTACAGAATTA
ACTTTAGCTTGCACCCTTTTCCCAGGAAAACTACTTGGTTGCTTTGCTGGTAAATGCAGT
GGAAGTATTAGATCTATAGTTAGACATCCAGAGCTACCTTTGATAGCATCTTGTGGACTG
GACAGTTACTTACGCATCTGGGACACAAATACAAGGCAGCTGCTCTCTGCGGTCTTCCTC
AAGCAGCACCTGACAGCTGTGGTTATTGATTCACATTTCTCCACTGAAGAACTCGAGGAG
ACTAAATCCAAGCAGCCAGATCCAGTTGGGGCAGAAGTTAGAAAGGAAAGAAAGGAAAAG
AAGAATAGAACGAGTGAAATGGATGAAGACGAAACTAGAATGCTCGACCATGATGACAGT
GATTCTGAAATGCACACCTCAAAGAGAAAAAAATCTGGTGAAAAAAGCAAAGGAATGAAA
AAGAAAAGCAAGAAGCAGCAAGTCGCATAGATAGGACACACAACACTGGAGTCAGTGTTG
ACCAGTTTTGACTTTTTGACTAAGGTGCTTTGCCCTTCACTCGATTTTGTACAATGAATA
TCATTTGTATTAGAGTTTATTCGAACTCGAACAATAGCACTTATCTGGATTCTCAATTCT
TCAAATACTTGCCGGGCCAATTAAGTATTTTACTATGCCTTCTGAGCAATATAAAAGAAA
TGGCGT

consensusID : consensus_2339#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 678
fasta sequence 
                              [GACACCGGGGATGCGTTGGTGTTAAATGCAGTGGACAGATTGGGATTGATAGTTAGCCGTCAACTATTCCCTGTGATAGCCTTTTGTGAGCTGGCCAGGTCCTTCGGCATCTGGGCCGCAAATACAAGGATGCTGCTCTGGGCGTTCTTCCTCAAGCAGCACATGACAGCTGTGGTTATTGATTCATATTTGTCCGCTGAGGAACTCGAGGAGCCTAAATCCAAGCAGCCAGATCCAGTTGGGGCAGAAGTTAGAAAGGAAAGAAAGGAAAAGAAGAATAGACCGAGTGAAATGGATGAAGACGAAACTAGAATGCTCGACCATGATGACAGTGATTTTGAAATGCACACCTCAAAGAGAAAAAAAATCTGGTGAAAAAAGCAAAGGAATGAAAAAGAAAAGCAAGAAGCAGCAAGTCGCATAGATAGGACACACAACACTGGAGTCAGTGTTGACCAGTTTTGACTTTTTGACTAAGGTGCTTTGCCCTTCACTCGATTTTGTACAATGAATATCATTTGTATTAGAGTTTATTCGAACTCGAACAATAGCACTTATCTGGATTCTCAATTCTTCAAATACTTGCCGGGCCAATCAAGTATTTTACTATGCCTTCTGAGCAATATAAAAGAAATGGTGTATTATCACCCCTTTTTTGTGTGCTAAAAAAAAAAAAAA]

[-] EMBL CA762057             [GACACCGGGGATGCGTTGGTGTTAAATGCAGTGGACAGATTGGGATTGATAGTTAGCCGTCAACTATTCCCTGTGATAGCCTTTTGTGAGCTGGCCAGGTCCTTCGGCATCTGGGCCGCAAATACAAGGATGCTGCTCTGGGCGTTCTTCCTCAAGCAGCACATGACAGCTGTGGTTATTGATTCATATTTGTCCGCTGAGGAACTCGAGGAGCCTAAATCCAAGCAGCCAGATCCAGTTGGGGCAGAAGTTAGAAAGGAAAGAAAGGAAAAGAAGAATAGACCGAGTGAAATGGATGAAGACGAAACTAGAATGCTCGACCATGATGACAGTGATTTTGAAATGCACACCTCAAAGAGAAAAAAAATCTGGTGAAAAAAGCAAAGGAATGAAAAAGAAAAGCAAGAAGCAGCAAGTCGCATAGATAGGACACACAACACTGGAGTCAGTGTTGACCAGTTTTGACTTTTTGACTAAGGTGCTTTGCCCTTCACTCGATTTTGTACAATGAATATCATTTGTATTAGAGTTTATTCGAACTCGAACAATAGCACTTATCTGGATTCTCAATTCTTCAAATACTTGCCGGGCCAATCAAGTATTTTACTATGCCTTCTGAGCAATATAAAAGAAATGGTGTATTATCACCCCTTTTTTGTGTGCTAAAAAAAAAAAAAA]




>consensus_2339#1
GACACCGGGGATGCGTTGGTGTTAAATGCAGTGGACAGATTGGGATTGATAGTTAGCCGT
CAACTATTCCCTGTGATAGCCTTTTGTGAGCTGGCCAGGTCCTTCGGCATCTGGGCCGCA
AATACAAGGATGCTGCTCTGGGCGTTCTTCCTCAAGCAGCACATGACAGCTGTGGTTATT
GATTCATATTTGTCCGCTGAGGAACTCGAGGAGCCTAAATCCAAGCAGCCAGATCCAGTT
GGGGCAGAAGTTAGAAAGGAAAGAAAGGAAAAGAAGAATAGACCGAGTGAAATGGATGAA
GACGAAACTAGAATGCTCGACCATGATGACAGTGATTTTGAAATGCACACCTCAAAGAGA
AAAAAAATCTGGTGAAAAAAGCAAAGGAATGAAAAAGAAAAGCAAGAAGCAGCAAGTCGC
ATAGATAGGACACACAACACTGGAGTCAGTGTTGACCAGTTTTGACTTTTTGACTAAGGT
GCTTTGCCCTTCACTCGATTTTGTACAATGAATATCATTTGTATTAGAGTTTATTCGAAC
TCGAACAATAGCACTTATCTGGATTCTCAATTCTTCAAATACTTGCCGGGCCAATCAAGT
ATTTTACTATGCCTTCTGAGCAATATAAAAGAAATGGTGTATTATCACCCCTTTTTTGTG
TGCTAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2339#0      CGCCTCCGCCTCCTCCCCCTCCATCGCCGGCGGCCGCTTCTAGCCGGAGAGAAGAAGGCA 60
consensus_2339#1      ------------------------------------------------------------
                                                                                  

consensus_2339#0      TGCCGCGGACGAGCGTGGTCGAGAGCCCCGGCTGCCCGCCGCTCCGGGCCCTCACCACCG 120
consensus_2339#1      ------------------------------------------------------------
                                                                                  

consensus_2339#0      ACATCCTCGGCCTCATCAAAGTCGTGGAGGCCCGCACGAAGCCGGCGGGCGTCGCCAAGG 180
consensus_2339#1      ------------------------------------------------------------
                                                                                  

consensus_2339#0      TCGTCGAGACGTGGGGCGCGCCCGACGCGCCCCGCGCCGTCCTCGCCGCCTCGCTCGCCG 240
consensus_2339#1      ------------------------------------------------------------
                                                                                  

consensus_2339#0      ACCGCGCCGTCGACCCCGTTTTGGCCGTGGCGCGGAAGAACGGCGTGGTTGAGCTGCTGA 300
consensus_2339#1      ------------------------------------------------------------
                                                                                  

consensus_2339#0      ATCCACTGAATGGGGAGACTCTCGCAGGCGTCAACGCTGCTGCTGGGCGGGCGGCACCGG 360
consensus_2339#1      ------------------------------------------------------------
                                                                                  

consensus_2339#0      CTGATAGTTCTGCAGAAGAGGACCCCTTAGCCACGCTGCATCTCTTCAGAAGACATGCGC 420
consensus_2339#1      ------------------------------------------------------------
                                                                                  

consensus_2339#0      TGGACTCATCCATGTTAGGCACATTTCTTGCTTGTACAGAGAAGGGGAAAGCATATGTCA 480
consensus_2339#1      ------------------------------------------------------------
                                                                                  

consensus_2339#0      AGTCTGTCGCAAAGGAAAATGCATCCTCGGACATGGCTGTTGGGCCATCAAGCTCATGGG 540
consensus_2339#1      ------------------------------------------------------------
                                                                                  

consensus_2339#0      ATGTGAGCAATTCGGGTACAGTGCAATTTTCTTCAGTGGATGCTGGTGAAAGCTACGCGA 600
consensus_2339#1      ------------------------------------------------------------
                                                                                  

consensus_2339#0      TGTTCGGAGGGAAAGGAATAGAAGTCAATTTGTGGGATATCACATCTTGTAGTAAGATAT 660
consensus_2339#1      ------------------------------------------------------------
                                                                                  

consensus_2339#0      GGTCTGCCAAGTCTCCTCGAGGCAACAGTCTTCAGATATTCACTGCACCTTGGTTCACTG 720
consensus_2339#1      ------------------------------------------------------------
                                                                                  

consensus_2339#0      CTGGAACTTTTTTGTGCAAGGATGACCATCGTAAAATTGTAGCCTGCACAAATAATCATC 780
consensus_2339#1      ------------------------------------------------------------
                                                                                  

consensus_2339#0      AGGTTCGCTTATATGACACTGCTTCCCAAAGAAGGCCTGTAATTTCAGTTGATTTTAGGG 840
consensus_2339#1      ------------------------------------------------------------
                                                                                  

consensus_2339#0      AGTCACCAATCAAGGCAGTTGCTGAGGACCCAAATGGACATGCTGTCTACATTGGTACAG 900
consensus_2339#1      ------------------------------------------------------------
                                                                                  

consensus_2339#0      GAAGAGGGGACCTTGCTTCCTTTGACATGAGAACAGGTATTATATGATAGTAGCTGGTGT 960
consensus_2339#1      ------------------------------------------------------------
                                                                                  

consensus_2339#0      GTGATAATTCTTGCTGATGGCACTTGGAAGTCAAAATACATTCTGAATTATATTTTCAGA 1020
consensus_2339#1      ------------------------------------------------------------
                                                                                  

consensus_2339#0      GTTGTAGCTTAGTTTGAATTTTGTATCTAGTATACTATAGTTCAAATAAAAATCTCTTTT 1080
consensus_2339#1      ------------------------------------------------------------
                                                                                  

consensus_2339#0      CATTTTCGTACTCTAAAGTTCACTCTGGCATGTGTATTTCATTGTACTATTTTTTGGCTA 1140
consensus_2339#1      ------------------------------------------------------------
                                                                                  

consensus_2339#0      CCATGCTCTGATGCTTACATAGGTGGTACAACATTGGTTGTTTATTTATTTTCCTGATCG 1200
consensus_2339#1      ------------------------------------------------------------
                                                                                  

consensus_2339#0      ATTCATAGTTAGTTCATCATGTGCTATATGGATACATTTAACTGCCTGGAGAAGTTTTAT 1260
consensus_2339#1      ------------------------------------------------------------
                                                                                  

consensus_2339#0      TTAAATTTAACTTAATATTCTGCAATGAGCTTATGCATCATGCACTTTTTTGGAGGAACA 1320
consensus_2339#1      ------------------------------------------------------------
                                                                                  

consensus_2339#0      GAGAAAACAAATATGCATCTCTGTGGGTTTCCAGGAACATCAACTGTGAATCAAAACCTT 1380
consensus_2339#1      ------------------------------------------------------------
                                                                                  

consensus_2339#0      CGGTTGAATATTCTTGCTAAAAATGCACCTCCTCAATTGATTCCTGTGTACATCCCTCAA 1440
consensus_2339#1      ------------------------------------------------------------
                                                                                  

consensus_2339#0      CTATAGCATGAATAAAGTTGTGCTGTTATGGTTCTTGTACTAACCTGAGCAAATATGCCA 1500
consensus_2339#1      ------------------------------------------------------------
                                                                                  

consensus_2339#0      ACAAATTTTCAGGGGATTTGAGACTACTAAACTATCTGTGAGTGATATTGAAATACCAGA 1560
consensus_2339#1      ------------------------------------------------------------
                                                                                  

consensus_2339#0      TAAATTGGTTTCAATTCAGGCGTTAGAAAGATATCTTGTTCATGTCCCTTATCAGATATC 1620
consensus_2339#1      ------------------------------------------------------------
                                                                                  

consensus_2339#0      AAAAGATGTTTGATTATTGTATGCTTACAACATTCTAGATTATATTCTATGTAAATTCCT 1680
consensus_2339#1      ------------------------------------------------------------
                                                                                  

consensus_2339#0      TACACTTTGCAATCGGTATTCACTTTTTAGTTCTTTTTAATGTATCTATTTACAGAATTA 1740
consensus_2339#1      ------------------------------------------------------------
                                                                                  

consensus_2339#0      ACTTTAGCTTGCACCCTTTTCCCAGGAAAACTACTTGGTTGCTTTGCTGGTAAATGCAGT 1800
consensus_2339#1      ----------------------------GACACCGGGGATGCGTTGGTGTTAAATGCAGT 32
                                                   **  *  ** *** *** ** **********

consensus_2339#0      GGAAGTATTAG-ATCTATAGTTAGACATCCAGAGCTACCTTTGATAGCATCTTGTGGACT 1859
consensus_2339#1      GGACAGATTGGGATTGATAGTTAGCCGTCAACTATTCCCTGTGATAGCCTTTTGTGAGCT 92
                      ***   *** * **  ******** * ** *    * *** ******* * *****  **

consensus_2339#0      GGACAGTTACTTACGCATCTGGGACACAAATACAAGGCAGCTGCTCTCTGCGGTCTTCCT 1919
consensus_2339#1      GGCCAGGTCCTTCGGCATCTGGGCCGCAAATACAAGGATGCTGCTCTGGGCGTTCTTCCT 152
                      ** *** * ***  ********* * ***********  ********  *** *******

consensus_2339#0      CAAGCAGCACCTGACAGCTGTGGTTATTGATTCACATTTCTCCACTGAAGAACTCGAGGA 1979
consensus_2339#1      CAAGCAGCACATGACAGCTGTGGTTATTGATTCATATTTGTCCGCTGAGGAACTCGAGGA 212
                      ********** *********************** **** *** **** ***********

consensus_2339#0      GACTAAATCCAAGCAGCCAGATCCAGTTGGGGCAGAAGTTAGAAAGGAAAGAAAGGAAAA 2039
consensus_2339#1      GCCTAAATCCAAGCAGCCAGATCCAGTTGGGGCAGAAGTTAGAAAGGAAAGAAAGGAAAA 272
                      * **********************************************************

consensus_2339#0      GAAGAATAGAACGAGTGAAATGGATGAAGACGAAACTAGAATGCTCGACCATGATGACAG 2099
consensus_2339#1      GAAGAATAGACCGAGTGAAATGGATGAAGACGAAACTAGAATGCTCGACCATGATGACAG 332
                      ********** *************************************************

consensus_2339#0      TGATTCTGAAATGCACACCTCAAAGAGAAAAAAA-TCTGGTGAAAAAAGCAAAGGAATGA 2158
consensus_2339#1      TGATTTTGAAATGCACACCTCAAAGAGAAAAAAAATCTGGTGAAAAAAGCAAAGGAATGA 392
                      ***** **************************** *************************

consensus_2339#0      AAAAGAAAAGCAAGAAGCAGCAAGTCGCATAGATAGGACACACAACACTGGAGTCAGTGT 2218
consensus_2339#1      AAAAGAAAAGCAAGAAGCAGCAAGTCGCATAGATAGGACACACAACACTGGAGTCAGTGT 452
                      ************************************************************

consensus_2339#0      TGACCAGTTTTGACTTTTTGACTAAGGTGCTTTGCCCTTCACTCGATTTTGTACAATGAA 2278
consensus_2339#1      TGACCAGTTTTGACTTTTTGACTAAGGTGCTTTGCCCTTCACTCGATTTTGTACAATGAA 512
                      ************************************************************

consensus_2339#0      TATCATTTGTATTAGAGTTTATTCGAACTCGAACAATAGCACTTATCTGGATTCTCAATT 2338
consensus_2339#1      TATCATTTGTATTAGAGTTTATTCGAACTCGAACAATAGCACTTATCTGGATTCTCAATT 572
                      ************************************************************

consensus_2339#0      CTTCAAATACTTGCCGGGCCAATTAAGTATTTTACTATGCCTTCTGAGCAATATAAAAGA 2398
consensus_2339#1      CTTCAAATACTTGCCGGGCCAATCAAGTATTTTACTATGCCTTCTGAGCAATATAAAAGA 632
                      *********************** ************************************

consensus_2339#0      AATGGCGT-------------------------------------- 2406
consensus_2339#1      AATGGTGTATTATCACCCCTTTTTTGTGTGCTAAAAAAAAAAAAAA 678
                      ***** **


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)