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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_234#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1371 fasta sequence
[CTACTCGACGTCGTCGACGAACTCGCAGTCCCCTCCGGAGCCCCGCGACAGCTGCAGAGACGACAGATCATTGGACATATGGTATACTGCTAAAGAATTTGTCAAGAAGTATCCAGTTGTACTCTTTGCTCAGCCTACAGATACACACTCTCAGTTCCACAGGTGGGTATACCAGGAGTGGTTCAAACCCACGGTAAGAAGCTTGCTTAAGTGTGTCAGTGATCACCATGCTTCCAATTTGGAGTTTCAGGAGATTACTACGGAGAATGTCAAGATATTTTGCAATGCTGATGCTCCTCAATTTATTCCCCGAATCAAAATCTACTGTGAGACCAGAAAAGCGACTTATGAAGGGAGAAAGCAGAATTTTGTGCAGACAGGGGAACTGATAACAGAGTTGATAAAATCTTCTGTGGACAATCCAACTGAGGTTTTGGACCTGCTCTCTGAGGACATGAAAGATAAGCTCAGTATGTTGAAAAATCCTGACCTGTCTCATGATGCTGATCCACGGCAGTGTGGAGTTTATATCCTTGTGAATCATCCGTCCATGCTACGAAGGGAGATGCAATCTCCGTTTTACCTTGCCTGTTATGATTTGCTAATGAGTGTGGATAAAAGAATTGCAAACAGGGCATTCAGGAAACTGCCTTATAAGAACTGGCAGTCAAGAGCCCTGCAACACCCCCTGCTCAAAGATCATCTCATCAATAGACGGTCTAGCTATGGCAGAGACAAGTATCACCAAGCAAGATATCATCGGAATGTGGCAAGTCACAAAACATCATGGAAATCCAAGTACAAAGCTGAAGAGGTCGACGAGATTATCCACCACCGCTTTCCGATGATTTTAACACGTCTGATGAAGGTCCTGTCAAAGATGAAGTTGCTGATACGCCTTACCCTCCACAACTTCTTTGGATAAAGAATGCTGTAGTGAATCTACTGCAGTAGCAAAGCTCAACTTCTTCATGTAGGAAAGGCCATAGTGATGCAACTTTTTAACAAAGCTGAATCTGCAGATACCCCATGACTTCTTCGGCTAAGGAAGGCCACTGTCAAGCTATTGCTGTAACAAATCTGAATCTCTTATACCAGAACTGGTGTTGTCTGCCGCACCCTCACAACTTCTTGGAGTGGGGCCGAAACAAATGCAAAAGCACTTCATGCTTATTACGAGTAGGTTTTGTCTCATTAACTTTTTGTTCTTTAGGCCCCAGTTATATCCAATTGTCTGAATCCCTATGCAGGTTAATTTCCTGGGTTCATGTAACAATGCAAACCCATGATTTTGCTTCATATCAACATAGCTAAACATGATATTTTTCTGTCGACATTTCTTCTGATATGCCAGAAATATATATTTTTCTT]
[+] EMBL AK106722 [CTACTCGACGTCGTCGACGAACTCGCAGTCCCCTCCGGAGCCCCGCGACAGCTGCAGAGACGACAGATCATTGGACATATGGTATACTGCTAAAGAATTTGTCAAGAAGTATCCAGTTGTACTCTTTGCTCAGCCTACAGATACACACTCTCAGTTCCACAGGTGGGTATACCAGGAGTGGTTCAAACCCACGGTAAGAAGCTTGCTTAAGTGTGTCAGTGATCACCATGCTTCCAATTTGGAGTTTCAGGAGATTACTACGGAGAATGTCAAGATATTTTGCAATGCTGATGCTCCTCAATTTATTCCCCGAATCAAAATCTACTGTGAGACCAGAAAAGCGACTTATGAAGGGAGAAAGCAGAATTTTGTGCAGACAGGGGAACTGATAACAGAGTTGATAAAATCTTCTGTGGACAATCCAACTGAGGTTTTGGACCTGCTCTCTGAGGACATGAAAGATAAGCTCAGTATGTTGAAAAATCCTGACCTGTCTCATGATGCTGATCCACGGCAGTGTGGAGTTTATATCCTTGTGAATCATCCGTCCATGCTACGAAGGGAGATGCAATCTCCGTTTTACCTTGCCTGTTATGATTTGCTAATGAGTGTGGATAAAAGAATTGCAAACAGGGCATTCAGGAAACTGCCTTATAAGAACTGGCAGTCAAGAGCCCTGCAACACCCCCTGCTCAAAGATCATCTCATCAATAGACGGTCTAGCTATGGCAGAGACAAGTATCACCAAGCAAGATATCATCGGAATGTGGCAAGTCACAAAACATCATGGAAATCCAAGTACAAAGCTGAAGAGGTCGACGAGATTATCCACCACCGCTTTCCGATGATTTTAACACGTCTGATGAAGGTCCTGTCAAAGATGAAGTTGCTGATACGCCTTACCCTCCACAACTTCTTTGGATAAAGAATGCTGTAGTGAATCTACTGCAGTAGCAAAGCTCAACTTCTTCATGTAGGAAAGGCCATAGTGATGCAACTTTTTAACAAAGCTGAATCTGCAGATACCCCATGACTTCTTCGGCTAAGGAAGGCCACTGTCAAGCTATTGCTGTAACAAATCTGAATCTCTTATACCAGAACTGGTGTTGTCTGCCGCACCCTCACAACTTCTTGGAGTGGGGCCGAAACAAATGCAAAAGCACTTCATGCTTATTACGAGTAGGTTTTGTCTCATTAACTTTTTGTTCTTTAGGCCCCAGTTATATCCAATTGTCTGAATCCCTATGCAGGTTAATTTCCTGGGTTCATGTAACAATGCAAACCCATGATTTTGCTTCATATCAACATAGCTAAACATGATATTTTTCTGTCGACATTTCTTCTGATATGCCAGAAATATATATTTTTCTT]
consensusID : consensus_234#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 632 fasta sequence
[GAGACAAGGGGGTCACAAAACATCATGGAAATCCAAGTACAAAGCTGAAGAGGTCGACGAGATTATCCACCACCACTTTCCGATGATTTTAACACGTCTGATGAAGGTCCTGTCAAAGATGAAGTTGCTGATACGCCTTACCCTCCACAACTTCTTTGGATAAAGAATGCTGTAGTGAATCTACTGCAGTAGCAAAGCTCAACTGCTTCATGTAGGAAAGGCCATAGTGATGCAACTTTTTAACAAAGCTGAATCTGCAGATACCCCATGACTTCTTCGGCTAAGGAAGGCCACTGTCAAGCTATTGCTGTAACAAATCTGAATCTCTTATACCAGAACTGGTGTTGTCTGCCGCACCCTCACAACTTCTTGGAGTGGGGCCGAAACAAATGCAAAAGCACTTCATGCTTATTGCGAGTAGGTTTTGTCTCATTAACTTTTTGTTCTTTAGGCCCCAGTTATATCCAATTGTCTGAATCCCTATGCAGGTTAATTTCCTGGGTTCATGTAACAATGCAAACCCATGATTTTGCTTCATATCAACATAGCTAAACATGATATTTTTCTGTCGACATTTCTTTTGATATGCCAGAAATATATATTTTTCTTTTGACTTGATACAAAAAAAAAAA]
[-] EMBL CA760656 [GAGACAAGGGGGTCACAAAACATCATGGAAATCCAAGTACAAAGCTGAAGAGGTCGACGAGATTATCCACCACCACTTTCCGATGATTTTAACACGTCTGATGAAGGTCCTGTCAAAGATGAAGTTGCTGATACGCCTTACCCTCCACAACTTCTTTGGATAAAGAATGCTGTAGTGAATCTACTGCAGTAGCAAAGCTCAACTGCTTCATGTAGGAAAGGCCATAGTGATGCAACTTTTTAACAAAGCTGAATCTGCAGATACCCCATGACTTCTTCGGCTAAGGAAGGCCACTGTCAAGCTATTGCTGTAACAAATCTGAATCTCTTATACCAGAACTGGTGTTGTCTGCCGCACCCTCACAACTTCTTGGAGTGGGGCCGAAACAAATGCAAAAGCACTTCATGCTTATTGCGAGTAGGTTTTGTCTCATTAACTTTTTGTTCTTTAGGCCCCAGTTATATCCAATTGTCTGAATCCCTATGCAGGTTAATTTCCTGGGTTCATGTAACAATGCAAACCCATGATTTTGCTTCATATCAACATAGCTAAACATGATATTTTTCTGTCGACATTTCTTTTGATATGCCAGAAATATATATTTTTCTTTTGACTTGATACAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_234#0 CTACTCGACGTCGTCGACGAACTCGCAGTCCCCTCCGGAGCCCCGCGACAGCTGCAGAGA 60
consensus_234#1 ------------------------------------------------------------
consensus_234#0 CGACAGATCATTGGACATATGGTATACTGCTAAAGAATTTGTCAAGAAGTATCCAGTTGT 120
consensus_234#1 ------------------------------------------------------------
consensus_234#0 ACTCTTTGCTCAGCCTACAGATACACACTCTCAGTTCCACAGGTGGGTATACCAGGAGTG 180
consensus_234#1 ------------------------------------------------------------
consensus_234#0 GTTCAAACCCACGGTAAGAAGCTTGCTTAAGTGTGTCAGTGATCACCATGCTTCCAATTT 240
consensus_234#1 ------------------------------------------------------------
consensus_234#0 GGAGTTTCAGGAGATTACTACGGAGAATGTCAAGATATTTTGCAATGCTGATGCTCCTCA 300
consensus_234#1 ------------------------------------------------------------
consensus_234#0 ATTTATTCCCCGAATCAAAATCTACTGTGAGACCAGAAAAGCGACTTATGAAGGGAGAAA 360
consensus_234#1 ------------------------------------------------------------
consensus_234#0 GCAGAATTTTGTGCAGACAGGGGAACTGATAACAGAGTTGATAAAATCTTCTGTGGACAA 420
consensus_234#1 ------------------------------------------------------------
consensus_234#0 TCCAACTGAGGTTTTGGACCTGCTCTCTGAGGACATGAAAGATAAGCTCAGTATGTTGAA 480
consensus_234#1 ------------------------------------------------------------
consensus_234#0 AAATCCTGACCTGTCTCATGATGCTGATCCACGGCAGTGTGGAGTTTATATCCTTGTGAA 540
consensus_234#1 ------------------------------------------------------------
consensus_234#0 TCATCCGTCCATGCTACGAAGGGAGATGCAATCTCCGTTTTACCTTGCCTGTTATGATTT 600
consensus_234#1 ------------------------------------------------------------
consensus_234#0 GCTAATGAGTGTGGATAAAAGAATTGCAAACAGGGCATTCAGGAAACTGCCTTATAAGAA 660
consensus_234#1 ------------------------------------------------------------
consensus_234#0 CTGGCAGTCAAGAGCCCTGCAACACCCCCTGCTCAAAGATCATCTCATCAATAGACGGTC 720
consensus_234#1 ------------------------------------------------------------
consensus_234#0 TAGCTATGGCAGAGACAAGTATCACCAAGCAAGATATCATCGGAATGTGGCAAGTCACAA 780
consensus_234#1 -----------------------------------------GAGACAAGG-GGGTCACAA 18
* * ** *******
consensus_234#0 AACATCATGGAAATCCAAGTACAAAGCTGAAGAGGTCGACGAGATTATCCACCACCGCTT 840
consensus_234#1 AACATCATGGAAATCCAAGTACAAAGCTGAAGAGGTCGACGAGATTATCCACCACCACTT 78
******************************************************** ***
consensus_234#0 TCCGATGATTTTAACACGTCTGATGAAGGTCCTGTCAAAGATGAAGTTGCTGATACGCCT 900
consensus_234#1 TCCGATGATTTTAACACGTCTGATGAAGGTCCTGTCAAAGATGAAGTTGCTGATACGCCT 138
************************************************************
consensus_234#0 TACCCTCCACAACTTCTTTGGATAAAGAATGCTGTAGTGAATCTACTGCAGTAGCAAAGC 960
consensus_234#1 TACCCTCCACAACTTCTTTGGATAAAGAATGCTGTAGTGAATCTACTGCAGTAGCAAAGC 198
************************************************************
consensus_234#0 TCAACTTCTTCATGTAGGAAAGGCCATAGTGATGCAACTTTTTAACAAAGCTGAATCTGC 1020
consensus_234#1 TCAACTGCTTCATGTAGGAAAGGCCATAGTGATGCAACTTTTTAACAAAGCTGAATCTGC 258
****** *****************************************************
consensus_234#0 AGATACCCCATGACTTCTTCGGCTAAGGAAGGCCACTGTCAAGCTATTGCTGTAACAAAT 1080
consensus_234#1 AGATACCCCATGACTTCTTCGGCTAAGGAAGGCCACTGTCAAGCTATTGCTGTAACAAAT 318
************************************************************
consensus_234#0 CTGAATCTCTTATACCAGAACTGGTGTTGTCTGCCGCACCCTCACAACTTCTTGGAGTGG 1140
consensus_234#1 CTGAATCTCTTATACCAGAACTGGTGTTGTCTGCCGCACCCTCACAACTTCTTGGAGTGG 378
************************************************************
consensus_234#0 GGCCGAAACAAATGCAAAAGCACTTCATGCTTATTACGAGTAGGTTTTGTCTCATTAACT 1200
consensus_234#1 GGCCGAAACAAATGCAAAAGCACTTCATGCTTATTGCGAGTAGGTTTTGTCTCATTAACT 438
*********************************** ************************
consensus_234#0 TTTTGTTCTTTAGGCCCCAGTTATATCCAATTGTCTGAATCCCTATGCAGGTTAATTTCC 1260
consensus_234#1 TTTTGTTCTTTAGGCCCCAGTTATATCCAATTGTCTGAATCCCTATGCAGGTTAATTTCC 498
************************************************************
consensus_234#0 TGGGTTCATGTAACAATGCAAACCCATGATTTTGCTTCATATCAACATAGCTAAACATGA 1320
consensus_234#1 TGGGTTCATGTAACAATGCAAACCCATGATTTTGCTTCATATCAACATAGCTAAACATGA 558
************************************************************
consensus_234#0 TATTTTTCTGTCGACATTTCTTCTGATATGCCAGAAATATATATTTTTCTT--------- 1371
consensus_234#1 TATTTTTCTGTCGACATTTCTTTTGATATGCCAGAAATATATATTTTTCTTTTGACTTGA 618
********************** ****************************
consensus_234#0 --------------
consensus_234#1 TACAAAAAAAAAAA 632
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||