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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2363#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 699 fasta sequence
[TAGAGACAGCAACTCACCAACCACTAGCTATAAGCTTATTGCCCTAGATTAACATAGCTAATTTCGACTAATCTCAATCAGTGACAACTTTTATTAAGTAGCTTAATTAGTTAGTTAGTTAGAAGAAAAGGGAAGGGGAGAAAGCTAGTATATGGGAGGGAGGTCGTTCCTGTGCATCTTCAGCTTCTCGAGGAGGTCGAGGCGGTACTACGCCGACGACGAGGCGGCGGCGGTGAGCGACTGGGAGCGGCCGGCGGCGACGAGGCTGCGGAAGGTCCGGTCGAGCGACGAGGACAACGGGTGGTGGATCGGCGAGCGCGACGTCGACCAGAAGGCCTCCGACTTCATCGCCAGGTTCCACCACCACCAGACCAGCCTCGTCGTCTGAACTACTCCATCGATATAGCTAGCTAACTCGCGATACAGGACCGCAGCTAGCTAGCTAGATGTAGTATTATTATATATATTATTACATGTATAGTATATATGTTGTAATGTGTGTGTGCAATATATATATATATATATATATATATATACATATATATATATATATATGCAGCTGGCTAGCTAGCTAGGGCATGCATGACATGAGATGAGGGCCGGAACTGCTATGTATGAATGTACAAATATAGTTTTAATTGTTTAATTAGCACTGCTGATGATATATAATAATAATAATAATAATGAATAAATATGTAT]
[+] EMBL AK107738 [TAGAGACAGCAACTCACCAACCACTAGCTATAAGCTTATTGCCCTAGATTAACATAGCTAATTTCGACTAATCTCAATCAGTGACAACTTTTATTAAGTAGCTTAATTAGTTAGTTAGTTAGAAGAAAAGGGAAGGGGAGAAAGCTAGTATATGGGAGGGAGGTCGTTCCTGTGCATCTTCAGCTTCTCGAGGAGGTCGAGGCGGTACTACGCCGACGACGAGGCGGCGGCGGTGAGCGACTGGGAGCGGCCGGCGGCGACGAGGCTGCGGAAGGTCCGGTCGAGCGACGAGGACAACGGGTGGTGGATCGGCGAGCGCGACGTCGACCAGAAGGCCTCCGACTTCATCGCCAGGTTCCACCACCACCAGACCAGCCTCGTCGTCTGAACTACTCCATCGATATAGCTAGCTAACTCGCGATACAGGACCGCAGCTAGCTAGCTAGATGTAGTATTATTATATATATTATTACATGTATAGTATATATGTTGTAATGTGTGTGTGCAATATATATATATATATATATATATATATACATATATATATATATATATGCAGCTGGCTAGCTAGCTAGGGCATGCATGACATGAGATGAGGGCCGGAACTGCTATGTATGAATGTACAAATATAGTTTTAATTGTTTAATTAGCACTGCTGATGATATATAATAATAATAATAATAATGAATAAATATGTAT]
consensusID : consensus_2363#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 642 fasta sequence
[TCACCAACCACTAGCTATAAGCTTATTGCCCTAGATTAACATAGCTAATTTCAACTAATCTCAATCAGTGACAACTTTTATTAAGTAGCTTAATTAGTTAGTTAGTTAGAAGAAAAGGGAAGGGGAGAAAGCTAGTATATGGGAGGGAGGTCGTTCCTGTGCATCTTCAGCTTCTCGAGGAGGTCGAGGCGGTACTACGCCGACGACGAGGCGGCGGCGGTGAGCGACTGGGAGCGGCCGGCGGCGACGAGGCTGCGGAAGGTCCGGTCGAGCGACGAGGACAACGGGTGGTGGATCGGCGAGCGCGACGTCGACCAGAAGGCCTCCGACTTCATCGCCAGGTTCCACCACCACCAGACCAGCCTCGTCGTCTGAACTACTCCATCGATATAGCTAGCTAACTCGCGATACAGGACCGCAGCTAGCTAGCTAGATGTAGTATTATTATATATATTATTACATGTATAGTATATATATATATATATATATACATATATATATATATATATGCAGCTGGCTAGCTAGCTAGGGCATGCATGACATGAGATGAGGGCCGGAACTGCTATGTATGAATGTACAAATATAGTTTTAATTGTTTAATTAGCACTGCTGATGATATATAATAATAATAATAATAATGAA]
[-] EMBL CB659600 [TCACCAACCACTAGCTATAAGCTTATTGCCCTAGATTAACATAGCTAATTTCAACTAATCTCAATCAGTGACAACTTTTATTAAGTAGCTTAATTAGTTAGTTAGTTAGAAGAAAAGGGAAGGGGAGAAAGCTAGTATATGGGAGGGAGGTCGTTCCTGTGCATCTTCAGCTTCTCGAGGAGGTCGAGGCGGTACTACGCCGACGACGAGGCGGCGGCGGTGAGCGACTGGGAGCGGCCGGCGGCGACGAGGCTGCGGAAGGTCCGGTCGAGCGACGAGGACAACGGGTGGTGGATCGGCGAGCGCGACGTCGACCAGAAGGCCTCCGACTTCATCGCCAGGTTCCACCACCACCAGACCAGCCTCGTCGTCTGAACTACTCCATCGATATAGCTAGCTAACTCGCGATACAGGACCGCAGCTAGCTAGCTAGATGTAGTATTATTATATATATTATTACATGTATAGTATATATATATATATATATATACATATATATATATATATATGCAGCTGGCTAGCTAGCTAGGGCATGCATGACATGAGATGAGGGCCGGAACTGCTATGTATGAATGTACAAATATAGTTTTAATTGTTTAATTAGCACTGCTGATGATATATAATAATAATAATAATAATGAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2363#0 TAGAGACAGCAACTCACCAACCACTAGCTATAAGCTTATTGCCCTAGATTAACATAGCTA 60
consensus_2363#1 -------------TCACCAACCACTAGCTATAAGCTTATTGCCCTAGATTAACATAGCTA 47
***********************************************
consensus_2363#0 ATTTCGACTAATCTCAATCAGTGACAACTTTTATTAAGTAGCTTAATTAGTTAGTTAGTT 120
consensus_2363#1 ATTTCAACTAATCTCAATCAGTGACAACTTTTATTAAGTAGCTTAATTAGTTAGTTAGTT 107
***** ******************************************************
consensus_2363#0 AGAAGAAAAGGGAAGGGGAGAAAGCTAGTATATGGGAGGGAGGTCGTTCCTGTGCATCTT 180
consensus_2363#1 AGAAGAAAAGGGAAGGGGAGAAAGCTAGTATATGGGAGGGAGGTCGTTCCTGTGCATCTT 167
************************************************************
consensus_2363#0 CAGCTTCTCGAGGAGGTCGAGGCGGTACTACGCCGACGACGAGGCGGCGGCGGTGAGCGA 240
consensus_2363#1 CAGCTTCTCGAGGAGGTCGAGGCGGTACTACGCCGACGACGAGGCGGCGGCGGTGAGCGA 227
************************************************************
consensus_2363#0 CTGGGAGCGGCCGGCGGCGACGAGGCTGCGGAAGGTCCGGTCGAGCGACGAGGACAACGG 300
consensus_2363#1 CTGGGAGCGGCCGGCGGCGACGAGGCTGCGGAAGGTCCGGTCGAGCGACGAGGACAACGG 287
************************************************************
consensus_2363#0 GTGGTGGATCGGCGAGCGCGACGTCGACCAGAAGGCCTCCGACTTCATCGCCAGGTTCCA 360
consensus_2363#1 GTGGTGGATCGGCGAGCGCGACGTCGACCAGAAGGCCTCCGACTTCATCGCCAGGTTCCA 347
************************************************************
consensus_2363#0 CCACCACCAGACCAGCCTCGTCGTCTGAACTACTCCATCGATATAGCTAGCTAACTCGCG 420
consensus_2363#1 CCACCACCAGACCAGCCTCGTCGTCTGAACTACTCCATCGATATAGCTAGCTAACTCGCG 407
************************************************************
consensus_2363#0 ATACAGGACCGCAGCTAGCTAGCTAGATGTAGTATTATTATATATATTATTACATGTATA 480
consensus_2363#1 ATACAGGACCGCAGCTAGCTAGCTAGATGTAGTATTATTATATATATTATTACATGTATA 467
************************************************************
consensus_2363#0 GTATATATGTTGTAATGTGTGTGTGCAATATATATATATATATATATATATATATACATA 540
consensus_2363#1 GTATATAT---------------------------------ATATATATATATATACATA 494
******** *******************
consensus_2363#0 TATATATATATATATGCAGCTGGCTAGCTAGCTAGGGCATGCATGACATGAGATGAGGGC 600
consensus_2363#1 TATATATATATATATGCAGCTGGCTAGCTAGCTAGGGCATGCATGACATGAGATGAGGGC 554
************************************************************
consensus_2363#0 CGGAACTGCTATGTATGAATGTACAAATATAGTTTTAATTGTTTAATTAGCACTGCTGAT 660
consensus_2363#1 CGGAACTGCTATGTATGAATGTACAAATATAGTTTTAATTGTTTAATTAGCACTGCTGAT 614
************************************************************
consensus_2363#0 GATATATAATAATAATAATAATAATGAATAAATATGTAT 699
consensus_2363#1 GATATATAATAATAATAATAATAATGAA----------- 642
****************************
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||