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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2366#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 806 fasta sequence
[ACAACCGCTCTACGCCATGGGGCGAAGCGAGTCGGCGTCCGCAGGAATTCCCTCTCCGCCCGTGCCCTAAACCGCTCGCCGCCGGCGACGTTGCGCCCCCGACCGCGAGTGGGCCGGCGGCGATGTCCGGCCCCGTCGTTCCCCTCGCCTGGACGGCTCAAGGGCCCTGCGAGCCCTCCCCTGGCTCTGGCCCGCTCCCCGTTTCCGCCGCCGCTAGCGATCCGCCGGCGCCCTCCTCGTCGGTGCCCGCCGGCGGTCGTGAGCCCTCCGCTAGCGGGCTGCCCCCCGCGGTGACTCCTCAGCTTGGGGATCATGATCAAGAAATGTTGGGTTTAGTATCCGGAAGAACCACGCAAATACTAGGGCGGATGGGAGTCTTTGCTCCAAATATTTCCTGTGCAGCAATGAAGGGCAGCCGGTGGCAAGCACTACCCAGCCGGGGCGGAAGAAACGTTCTTCAACAAGATCTGATTGCAAGGCTCGTCTTCAGTTCTATATTTCCCGAGAAGGTATCTGGACAGTGCAGAAGGTTGAGCTCGATCATAAGCACTATCTCGTAAGTCCTGATAAGTCACACATGTTAAGGTCCCAGCGCCGTTTGACACCGTCATATCAACAGATAGTGAATGAAATGCGGCAAGAAGGTATTACAGCAGCTGATATGCAAAGAGTATTTCGGCAATGGTCCAGGGGAGCTGAAAATGTGCATCTTCTGAAGAGAGATACTCAGAGAAAGTACCTCCAACCAAGTTATGCACAGAAATTGCTTGAGTATTTGAAGAACAAACAAACAGAAAATCCTTCAT]
[+] EMBL CB659904 [ACAACCGCTCTACGCCATGGGGCGAAGCGAGTCGGCGTCCGCAGGAATTCCCTCTCCGCCCGTGCCCTAAACCGCTCGCCGCCGGCGACGTTGCGCCCCCGACCGCGAGTGGGCCGGCGGCGATGTCCGGCCCCGTCGTTCCCCTCGCCTGGACGGCTCAAGGGCCCTGCGAGCCCTCCCCTGGCTCTGGCCCGCTCCCCGTTTCCGCCGCCGCTAGCGATCCGCCGGCGCCCTCCTCGTCGGTGCCCGCCGGCGGTCGTGAGCCCTCCGCTAGCGGGCTGCCCCCCGCGGTGACTCCTCAGCTTGGGGATCATGATCAAGAAATGTTGGGTTTAGTATCCGGAAGAACCACGCAAATACTAGGGCGGATGGGAGTCTTTGCTCCAAATATTTCCTGTGCAGCAATGAAGGGCAGCCGGTGGCAAGCACTACCCAGCCGGGGCGGAAGAAACGTTCTTCAACAAGATCTGATTGCAAGGCTCGTCTTCAGTTCTATATTTCCCGAGAAGGTATCTGGACAGTGCAGAAGGTTGAGCTCGATCATAAGCACTATCTCGTAAGTCCTGATAAGTCACACATGTTAAGGTCCCAGCGCCGTTTGACACCGTCATATCAACAGATAGTGAATGAAATGCGGCAAGAAGGTATTACAGCAGCTGATATGCAAAGAGTATTTCGGCAATGGTCCAGGGGAGCTGAAAATGTGCATCTTCTGAAGAGAGATACTCAGAGAAAGTACCTCCAACCAAGTTATGCACAGAAATTGCTTGAGTATTTGAAGAACAAACAAACAGAAAATCCTTCAT]
consensusID : consensus_2366#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 446 fasta sequence
[GGAGGAGCGGAAGTGAACAACCGCGCCACGCCATGGGGCGAAGCGAGTCGGCGTCCGCAGGATTTCCCTCTCCGCCCGTGCCCTAAACCGCTCGCCGCCGGCGACGTTGCGCCCCCGACCGCGAGTGGGCCGGCGGCGATGTCCGGCCCCGTCGTTCCCCTCGCCTGGACGGCTCAAGGGCCCTGCGAGCCCTCCCCTGGCTCTGGCCCGCTCCCCGTTTCCGCCGCCGCTAGCGATCCGCCGGCGCCCTCCTCGTCGGTGCCCGCCGGCGGTCGTGAGCCCTCCGCTAGCGGGCTGCCCCCCGCGGTGACTCCTCAGCTTGGGGTAATGACCTTTGGTTTGGCTTGATTTTGATGTCCTCTTGATATTGCTCATTGTTCATTTGAGGTATAGCAGTAGAATGATTTTGCTTGCAGCAATTATGTACTTTCTCCGTTTCATATTGT]
[+] EMBL AK109243 [GGAGGAGCGGAAGTGAACAACCGCGCCACGCCATGGGGCGAAGCGAGTCGGCGTCCGCAGGATTTCCCTCTCCGCCCGTGCCCTAAACCGCTCGCCGCCGGCGACGTTGCGCCCCCGACCGCGAGTGGGCCGGCGGCGATGTCCGGCCCCGTCGTTCCCCTCGCCTGGACGGCTCAAGGGCCCTGCGAGCCCTCCCCTGGCTCTGGCCCGCTCCCCGTTTCCGCCGCCGCTAGCGATCCGCCGGCGCCCTCCTCGTCGGTGCCCGCCGGCGGTCGTGAGCCCTCCGCTAGCGGGCTGCCCCCCGCGGTGACTCCTCAGCTTGGGGTAATGACCTTTGGTTTGGCTTGATTTTGATGTCCTCTTGATATTGCTCATTGTTCATTTGAGGTATAGCAGTAGAATGATTTTGCTTGCAGCAATTATGTACTTTCTCCGTTTCATATTGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2366#0 ----------------ACAACCGCTCTACGCCATGGGGCGAAGCGAGTCGGCGTCCGCAG 44
consensus_2366#1 GGAGGAGCGGAAGTGAACAACCGCGCCACGCCATGGGGCGAAGCGAGTCGGCGTCCGCAG 60
******** * *********************************
consensus_2366#0 GAATTCCCTCTCCGCCCGTGCCCTAAACCGCTCGCCGCCGGCGACGTTGCGCCCCCGACC 104
consensus_2366#1 GATTTCCCTCTCCGCCCGTGCCCTAAACCGCTCGCCGCCGGCGACGTTGCGCCCCCGACC 120
** *********************************************************
consensus_2366#0 GCGAGTGGGCCGGCGGCGATGTCCGGCCCCGTCGTTCCCCTCGCCTGGACGGCTCAAGGG 164
consensus_2366#1 GCGAGTGGGCCGGCGGCGATGTCCGGCCCCGTCGTTCCCCTCGCCTGGACGGCTCAAGGG 180
************************************************************
consensus_2366#0 CCCTGCGAGCCCTCCCCTGGCTCTGGCCCGCTCCCCGTTTCCGCCGCCGCTAGCGATCCG 224
consensus_2366#1 CCCTGCGAGCCCTCCCCTGGCTCTGGCCCGCTCCCCGTTTCCGCCGCCGCTAGCGATCCG 240
************************************************************
consensus_2366#0 CCGGCGCCCTCCTCGTCGGTGCCCGCCGGCGGTCGTGAGCCCTCCGCTAGCGGGCTGCCC 284
consensus_2366#1 CCGGCGCCCTCCTCGTCGGTGCCCGCCGGCGGTCGTGAGCCCTCCGCTAGCGGGCTGCCC 300
************************************************************
consensus_2366#0 CCCGCGGTGACTCCTCAGCTTGGGGATCATGATCAAGAAATGTTGGGTTTAGTATCCGGA 344
consensus_2366#1 CCCGCGGTGACTCCTCAGCTTGGGG-TAATGACCTTTG---GTTTGGCTTGAT-TTTGAT 355
************************* * **** * *** ** ** * * *
consensus_2366#0 AGAACCACGCAAATACT-AGGGCGGATGGGAGTCTTTGCTCCAAAT--ATTTCCTGTGCA 401
consensus_2366#1 GTCCTCTTGATATTGCTCATTGTTCATTTGAGGTATAGCAGTAGAATGATTTTGCTTGCA 415
* * * * ** * * ** *** * ** * * **** ****
consensus_2366#0 GCAATGAAGGGCAGCCGGTGGCAAGCACTACCCAGCCGGGGCGGAAGAAACGTTCTTCAA 461
consensus_2366#1 GCAATTATGTACTTTCTCCGTTTCATATTGT----------------------------- 446
***** * * * * * * *
consensus_2366#0 CAAGATCTGATTGCAAGGCTCGTCTTCAGTTCTATATTTCCCGAGAAGGTATCTGGACAG 521
consensus_2366#1 ------------------------------------------------------------
consensus_2366#0 TGCAGAAGGTTGAGCTCGATCATAAGCACTATCTCGTAAGTCCTGATAAGTCACACATGT 581
consensus_2366#1 ------------------------------------------------------------
consensus_2366#0 TAAGGTCCCAGCGCCGTTTGACACCGTCATATCAACAGATAGTGAATGAAATGCGGCAAG 641
consensus_2366#1 ------------------------------------------------------------
consensus_2366#0 AAGGTATTACAGCAGCTGATATGCAAAGAGTATTTCGGCAATGGTCCAGGGGAGCTGAAA 701
consensus_2366#1 ------------------------------------------------------------
consensus_2366#0 ATGTGCATCTTCTGAAGAGAGATACTCAGAGAAAGTACCTCCAACCAAGTTATGCACAGA 761
consensus_2366#1 ------------------------------------------------------------
consensus_2366#0 AATTGCTTGAGTATTTGAAGAACAAACAAACAGAAAATCCTTCAT 806
consensus_2366#1 ---------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||