These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2375#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 762 fasta sequence [CACCTTGCGGCATCTCTCTGGGGAACCTCCTCAAATTGGCTAGAGAACCGAGCCGATCGCGACGAGCGCTTTACACCTCGTCGCATCCCGCCCAAATTTGGCAGCTCTTCATCTCACCACAAATCCTCTGAAATCTTGTTGCTAAAACGTAGTACTCTGTAAATAGATAATACTGACTTTTGATGCAATCCAGGTGAGTGGTAATTGCATCCCTTCTGCTCTGGCGCTTCTCGAGCACCAGGTTTGCAGGGAAATATATATGGGCACACTTGCATCGCCTTTACTACGTCCATTAACACTTTCCAATTTGTTTAATTACCTGCTAACTTTGCTGCATCCCTCTCGATGGATATAAATACGCCTCTAGCTCTAACTTTTTCCAAGCCACCAAGAGAGAAAGGTACCGGCTTGATTGGCAGGTGTTGAGGCGATTCTTCTTCTTTGCTCAAGGAGAGATGGAGGTCGAGAAGAAGGCGACGACCGTGGAGGAGGTGAGAGGGGTGGAGGAGGAGACGAAGAAGGAGGAGGCGGCGGCTTCTGACGTGAGCCTGAAGGAGCTGTCCAAGAAGCTCGATGACTTCGCCAAGGAGAGGGACTGGGAGATGTACCATGCCCCGAGGAACCTTCTGCTTGCCATGATCGCTGAGGTCGGGGAGCTGTCGGAGCTGTTCATGTGGAAAGGGGAGGTGGCCAAGGGCCTGCCCGGGTGGAAGGAGTCGGAGAAGGAGCACCTCGGCGAGGAGCTCTCCGACGTGCTGCTCT] [+] EMBL CB660726 [CACCTTGCGGCATCTCTCTGGGGAACCTCCTCAAATTGGCTAGAGAACCGAGCCGATCGCGACGAGCGCTTTACACCTCGTCGCATCCCGCCCAAATTTGGCAGCTCTTCATCTCACCACAAATCCTCTGAAATCTTGTTGCTAAAACGTAGTACTCTGTAAATAGATAATACTGACTTTTGATGCAATCCAGGTGAGTGGTAATTGCATCCCTTCTGCTCTGGCGCTTCTCGAGCACCAGGTTTGCAGGGAAATATATATGGGCACACTTGCATCGCCTTTACTACGTCCATTAACACTTTCCAATTTGTTTAATTACCTGCTAACTTTGCTGCATCCCTCTCGATGGATATAAATACGCCTCTAGCTCTAACTTTTTCCAAGCCACCAAGAGAGAAAGGTACCGGCTTGATTGGCAGGTGTTGAGGCGATTCTTCTTCTTTGCTCAAGGAGAGATGGAGGTCGAGAAGAAGGCGACGACCGTGGAGGAGGTGAGAGGGGTGGAGGAGGAGACGAAGAAGGAGGAGGCGGCGGCTTCTGACGTGAGCCTGAAGGAGCTGTCCAAGAAGCTCGATGACTTCGCCAAGGAGAGGGACTGGGAGATGTACCATGCCCCGAGGAACCTTCTGCTTGCCATGATCGCTGAGGTCGGGGAGCTGTCGGAGCTGTTCATGTGGAAAGGGGAGGTGGCCAAGGGCCTGCCCGGGTGGAAGGAGTCGGAGAAGGAGCACCTCGGCGAGGAGCTCTCCGACGTGCTGCTCT] consensusID : consensus_2375#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 657 fasta sequence [AGAATATATCACGTTATAATGTCTGGAGACAAGAACCGATACTTTCAACACCCCCCTCACTTTTTTGAAAGAAAGAAAAGAAAACAGTACACAACAAAAACATATCTTCTGAGCTTCTCTCGCGAAGATAAACACTCGTAGAGTTGCAGAATCAGTTCATGCAGGTACCAGAATTCAGTTCATTCAAGGGCTCTTCGACGGCGCTGGGTACTTGACGGCGTTCTTGACGATCTTCCTGGGGGCGGCGTTCTCNAGGACCAAGCTTGCAGGGAAATATATATGGGCACACTTGCATCGCCTTTACTACGTCCATTAACACTTTGCGATTTGTTTAATTACCTGCTAACTTTGCTGCATCCCTCTCGATGGATATAAATACGCCTCTAGCTCTAACTTTTTCCAAGCCACCAAGAGAGAAAGGTACCGGCTTGATTGGCAGGTGTTGAGGCGATTCTTCTTCTTTGCTCAAGGAGAGATGGAGGTCGAGAAGAAGGCGACTACCGTGGAGGAGGTGAGAGGGGTGGAGGAGGAGACTAAGAAGGAGGAGGCGGCGGCTTCTGACGTGAGCCTGAAGGAGCTGTCCAAGAAGCCTCGATGACTTCGCCCAGGAGAGGGACTGGGAGATGTACCATGCCCCGAGGAACCTTCTGCTTGCCC] [+] EMBL CB660727 [AGAATATATCACGTTATAATGTCTGGAGACAAGAACCGATACTTTCAACACCCCCCTCACTTTTTTGAAAGAAAGAAAAGAAAACAGTACACAACAAAAACATATCTTCTGAGCTTCTCTCGCGAAGATAAACACTCGTAGAGTTGCAGAATCAGTTCATGCAGGTACCAGAATTCAGTTCATTCAAGGGCTCTTCGACGGCGCTGGGTACTTGACGGCGTTCTTGACGATCTTCCTGGGGGCGGCGTTCTCNAGGACCAAGCTTGCAGGGAAATATATATGGGCACACTTGCATCGCCTTTACTACGTCCATTAACACTTTGCGATTTGTTTAATTACCTGCTAACTTTGCTGCATCCCTCTCGATGGATATAAATACGCCTCTAGCTCTAACTTTTTCCAAGCCACCAAGAGAGAAAGGTACCGGCTTGATTGGCAGGTGTTGAGGCGATTCTTCTTCTTTGCTCAAGGAGAGATGGAGGTCGAGAAGAAGGCGACTACCGTGGAGGAGGTGAGAGGGGTGGAGGAGGAGACTAAGAAGGAGGAGGCGGCGGCTTCTGACGTGAGCCTGAAGGAGCTGTCCAAGAAGCCTCGATGACTTCGCCCAGGAGAGGGACTGGGAGATGTACCATGCCCCGAGGAACCTTCTGCTTGCCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2375#0 ----CACCTTGCGGCATCTCTCTGGGGAACCTCCTCAAATTGGCTAGAGAACCGAGCCGA 56 consensus_2375#1 AGAATATATCACGTTATAATGTCTGGAGACAAGAACCGATACTTTCAACACCCCCCTCAC 60 * * ** ** ** ** * ** * * * ** * consensus_2375#0 TCGCGACGAGCGCTTTACACCTCGTCGCATCCCGCCCAAATTTGGCAGCTCTTCATCTCA 116 consensus_2375#1 TTTTTTGAAAGAAAGAAAAGAAAACAGTACACAACAAAAACATATCTTCTGAGCTTCTCT 120 * * * * * * * * *** * * ** * **** consensus_2375#0 C-CACAAATCCTCTGAAATCTTGTTGCTAAAACGTAGTACTCTGTAAATAGATAATACTG 175 consensus_2375#1 CGCGAAGATAAACACTCGTAGAGTTGCAGAATCAGTTCATGCAGGTACCAGAATTCAGTT 180 * * * ** * * ***** ** * * * * * *** * * consensus_2375#0 ACTTTTGATGCAATCCA--GGTGAGTGGTAATTG----CATCCCT-----TCTGCTCTGG 224 consensus_2375#1 CATTCAAGGGCTCTTCGACGGCGCTGGGTACTTGACGGCGTTCTTGACGATCTTCCTGGG 240 ** ** * * ** * **** *** * * * * *** * ** consensus_2375#0 CGC----TTCTCGAGCACCAGGTTTGCAGGGAAATATATATGGGCACACTTGCATCGCCT 280 consensus_2375#1 GGCGGCGTTCTCNAGGACCAAGCTTGCAGGGAAATATATATGGGCACACTTGCATCGCCT 300 ** ***** ** **** * ************************************* consensus_2375#0 TTACTACGTCCATTAACACTTTCCAATTTGTTTAATTACCTGCTAACTTTGCTGCATCCC 340 consensus_2375#1 TTACTACGTCCATTAACACTTTGCGATTTGTTTAATTACCTGCTAACTTTGCTGCATCCC 360 ********************** * *********************************** consensus_2375#0 TCTCGATGGATATAAATACGCCTCTAGCTCTAACTTTTTCCAAGCCACCAAGAGAGAAAG 400 consensus_2375#1 TCTCGATGGATATAAATACGCCTCTAGCTCTAACTTTTTCCAAGCCACCAAGAGAGAAAG 420 ************************************************************ consensus_2375#0 GTACCGGCTTGATTGGCAGGTGTTGAGGCGATTCTTCTTCTTTGCTCAAGGAGAGATGGA 460 consensus_2375#1 GTACCGGCTTGATTGGCAGGTGTTGAGGCGATTCTTCTTCTTTGCTCAAGGAGAGATGGA 480 ************************************************************ consensus_2375#0 GGTCGAGAAGAAGGCGACGACCGTGGAGGAGGTGAGAGGGGTGGAGGAGGAGACGAAGAA 520 consensus_2375#1 GGTCGAGAAGAAGGCGACTACCGTGGAGGAGGTGAGAGGGGTGGAGGAGGAGACTAAGAA 540 ****************** *********************************** ***** consensus_2375#0 GGAGGAGGCGGCGGCTTCTGACGTGAGCCTGAAGGAGCTGTCCAAGAAGC-TCGATGACT 579 consensus_2375#1 GGAGGAGGCGGCGGCTTCTGACGTGAGCCTGAAGGAGCTGTCCAAGAAGCCTCGATGACT 600 ************************************************** ********* consensus_2375#0 TCGCCAAGGAGAGGGACTGGGAGATGTACCATGCCCCGAGGAACCTTCTGCTTGCCATGA 639 consensus_2375#1 TCGCCCAGGAGAGGGACTGGGAGATGTACCATGCCCCGAGGAACCTTCTGCTTGCCC--- 657 ***** ************************************************** consensus_2375#0 TCGCTGAGGTCGGGGAGCTGTCGGAGCTGTTCATGTGGAAAGGGGAGGTGGCCAAGGGCC 699 consensus_2375#1 ------------------------------------------------------------ consensus_2375#0 TGCCCGGGTGGAAGGAGTCGGAGAAGGAGCACCTCGGCGAGGAGCTCTCCGACGTGCTGC 759 consensus_2375#1 ------------------------------------------------------------ consensus_2375#0 TCT 762 consensus_2375#1 --- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||