These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2386#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 779 fasta sequence [GGTCTCCTCCTCCTCCTCCTCTCCACCCGCATCCGTGGCTCCGGTTGCGCTGCTCGGGAGGGAGGGAGGGTTACTAGGAGGTTGCTGGAGCGGCCGATGAGAGGGGCCAGCGGCGGCGGCGAGGGATTCGTCGGCGCCTCTTCCGTTTCAAACAATATTAGCCTACCAAATGAGGGTACTAGCCCTAGAGGAACAGATAATGCTGAATGTTCTGAGACATCTTCAGACAGGTCGAATTCGGAAAGCATAAAACCTGAAGAATGTGCAATGCCATCTTCAATATTTGATAAGAAGATTTCCATAAAAAAGAAGCTCAGATTGTTAAGTCGAATGGCTATACTGAAAGATGATGGAACTGTAGAAGTTGATATCCCCACTAATGCTGAGGCTGCATCTCTTGACCTTTCTTCAAATGATTACTGTAATGAAGCCTTTAGTGGGGAACCATTGGCATCTTCAGATTTCCAGCACAGACCTCCTATGCAAATTGTTATGCTCATTGTTGGTACTAGAGGAGATGTGCAGCCTTTTATAGCTATAGGAAAACGATTGCAGATCTATGGCCATCGTGTTAGACTGGCAACTCATGCCAACTTCAAGGATTTTGTTGTGACGGCTGGCCTGGAGTTTTATCCCCTAGGCGGAGACCCAAAACTTCTTGCAGGATACATGGTGAAGAATAAAGGGTTCTTGCCTGCAACTCCATCAGAAATCCCTATCCAGCGGAAGGAGATTAAAGAGATTATATTCTCCTTGCTTCCTGCTTGCAAAGATCCCGA] [+] EMBL CB661273 [GGTCTCCTCCTCCTCCTCCTCTCCACCCGCATCCGTGGCTCCGGTTGCGCTGCTCGGGAGGGAGGGAGGGTTACTAGGAGGTTGCTGGAGCGGCCGATGAGAGGGGCCAGCGGCGGCGGCGAGGGATTCGTCGGCGCCTCTTCCGTTTCAAACAATATTAGCCTACCAAATGAGGGTACTAGCCCTAGAGGAACAGATAATGCTGAATGTTCTGAGACATCTTCAGACAGGTCGAATTCGGAAAGCATAAAACCTGAAGAATGTGCAATGCCATCTTCAATATTTGATAAGAAGATTTCCATAAAAAAGAAGCTCAGATTGTTAAGTCGAATGGCTATACTGAAAGATGATGGAACTGTAGAAGTTGATATCCCCACTAATGCTGAGGCTGCATCTCTTGACCTTTCTTCAAATGATTACTGTAATGAAGCCTTTAGTGGGGAACCATTGGCATCTTCAGATTTCCAGCACAGACCTCCTATGCAAATTGTTATGCTCATTGTTGGTACTAGAGGAGATGTGCAGCCTTTTATAGCTATAGGAAAACGATTGCAGATCTATGGCCATCGTGTTAGACTGGCAACTCATGCCAACTTCAAGGATTTTGTTGTGACGGCTGGCCTGGAGTTTTATCCCCTAGGCGGAGACCCAAAACTTCTTGCAGGATACATGGTGAAGAATAAAGGGTTCTTGCCTGCAACTCCATCAGAAATCCCTATCCAGCGGAAGGAGATTAAAGAGATTATATTCTCCTTGCTTCCTGCTTGCAAAGATCCCGA] consensusID : consensus_2386#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 350 fasta sequence [CGCACCGTGGTCTCCTCCTCCTCCTCCTCTCCACCCGCATCCGTGGCTCCGGTTGCGCTGCTCGGGAGGGAGGGAGGGTTACTAGGAGGTTGCTGGAGCGGCCGATGAGAGGGGCCAGCGGCGGCGGCGAGGGATTCGTCGGCGCCTCTTCCGACAGGTCGAATTCGGAAAGCATAAAACCTGAAGAATGTGCAATGCCATCTTCAATATTTGATAAGAAGATTTCCATAAAAAAGAAGCTCAGATTGTTAAGTCGAATGGCTATACTGAAAGATGATGGAACTGTAGAAGTTGATATCCCCACTTAATGCTGAGGCTGCATCTCTTGACCTTTCCTTCAAATGATTACT] [+] EMBL OSS1147A [CGCACCGTGGTCTCCTCCTCCTCCTCCTCTCCACCCGCATCCGTGGCTCCGGTTGCGCTGCTCGGGAGGGAGGGAGGGTTACTAGGAGGTTGCTGGAGCGGCCGATGAGAGGGGCCAGCGGCGGCGGCGAGGGATTCGTCGGCGCCTCTTCCGACAGGTCGAATTCGGAAAGCATAAAACCTGAAGAATGTGCAATGCCATCTTCAATATTTGATAAGAAGATTTCCATAAAAAAGAAGCTCAGATTGTTAAGTCGAATGGCTATACTGAAAGATGATGGAACTGTAGAAGTTGATATCCCCACTTAATGCTGAGGCTGCATCTCTTGACCTTTCCTTCAAATGATTACT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2386#0 --------GGTCTCCTCCTCCTCCTCCTCTCCACCCGCATCCGTGGCTCCGGTTGCGCTG 52 consensus_2386#1 CGCACCGTGGTCTCCTCCTCCTCCTCCTCTCCACCCGCATCCGTGGCTCCGGTTGCGCTG 60 **************************************************** consensus_2386#0 CTCGGGAGGGAGGGAGGGTTACTAGGAGGTTGCTGGAGCGGCCGATGAGAGGGGCCAGCG 112 consensus_2386#1 CTCGGGAGGGAGGGAGGGTTACTAGGAGGTTGCTGGAGCGGCCGATGAGAGGGGCCAGCG 120 ************************************************************ consensus_2386#0 GCGGCGGCGAGGGATTCGTCGGCGCCTCTTCCGTTTCAAACAATATTAGCCTACCAAATG 172 consensus_2386#1 GCGGCGGCGAGGGATTCGTCGGCGCCTCTTCCG--------------------------- 153 ********************************* consensus_2386#0 AGGGTACTAGCCCTAGAGGAACAGATAATGCTGAATGTTCTGAGACATCTTCAGACAGGT 232 consensus_2386#1 ------------------------------------------------------ACAGGT 159 ****** consensus_2386#0 CGAATTCGGAAAGCATAAAACCTGAAGAATGTGCAATGCCATCTTCAATATTTGATAAGA 292 consensus_2386#1 CGAATTCGGAAAGCATAAAACCTGAAGAATGTGCAATGCCATCTTCAATATTTGATAAGA 219 ************************************************************ consensus_2386#0 AGATTTCCATAAAAAAGAAGCTCAGATTGTTAAGTCGAATGGCTATACTGAAAGATGATG 352 consensus_2386#1 AGATTTCCATAAAAAAGAAGCTCAGATTGTTAAGTCGAATGGCTATACTGAAAGATGATG 279 ************************************************************ consensus_2386#0 GAACTGTAGAAGTTGATATCCCCACT-AATGCTGAGGCTGCATCTCTTGACCTTTC-TTC 410 consensus_2386#1 GAACTGTAGAAGTTGATATCCCCACTTAATGCTGAGGCTGCATCTCTTGACCTTTCCTTC 339 ************************** ***************************** *** consensus_2386#0 AAATGATTACTGTAATGAAGCCTTTAGTGGGGAACCATTGGCATCTTCAGATTTCCAGCA 470 consensus_2386#1 AAATGATTACT------------------------------------------------- 350 *********** consensus_2386#0 CAGACCTCCTATGCAAATTGTTATGCTCATTGTTGGTACTAGAGGAGATGTGCAGCCTTT 530 consensus_2386#1 ------------------------------------------------------------ consensus_2386#0 TATAGCTATAGGAAAACGATTGCAGATCTATGGCCATCGTGTTAGACTGGCAACTCATGC 590 consensus_2386#1 ------------------------------------------------------------ consensus_2386#0 CAACTTCAAGGATTTTGTTGTGACGGCTGGCCTGGAGTTTTATCCCCTAGGCGGAGACCC 650 consensus_2386#1 ------------------------------------------------------------ consensus_2386#0 AAAACTTCTTGCAGGATACATGGTGAAGAATAAAGGGTTCTTGCCTGCAACTCCATCAGA 710 consensus_2386#1 ------------------------------------------------------------ consensus_2386#0 AATCCCTATCCAGCGGAAGGAGATTAAAGAGATTATATTCTCCTTGCTTCCTGCTTGCAA 770 consensus_2386#1 ------------------------------------------------------------ consensus_2386#0 AGATCCCGA 779 consensus_2386#1 --------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||