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These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 2403 cluster # 2403       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2403#0 length = 768 sequences # 1  
consensus_2403#1 length = 523 sequences # 1  

consensusID : consensus_2403#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 768
fasta sequence
                              [GAAAGAAGGAAGGTAGAAAAATAAAGGCACTCCCTCCTTCCAAAAGACTTCGCCTAGAGGCGCAGAGGGTGCTCAAGGAGCGTGTCCAGGATATTGCGGATAAGAAAGGCATCAAGCTGAGATTTTGCAGTCTCAGGGACTGTGAAAGCCACATAAAATCGTTAGACCGTCCATGTGAGAACATCAGAACTGAAATCGGATGGCCGCCAGGGGTTCCATTTGTCCATCCACATGACCTTCCAAACAAAGCAAAGCTCATGTTTCTGGAAGCCTATGAACCAGGATGGACTGCCTCCCAGCAAGATTTAGAGGAGCAGGTCTCTGTAAATTTAGATGCATTACCAACCTTGGATATGTTTTGAATTGCAGGGTTGGATCAGTAGTTTAATGATCTCACCTACATGCTGAGGAGTGAGGAGCTAGAAATGTATTGCTGACGCCAAATGGATGTAGAAATGCATACCAAGATTACTGACAGTCTGACACCAAATGCCGTTGAGAACATTGAGCTTGAGCATCTGTAAATGTAACCTACTTACTGCTGCGATTGTGTTATATTCAGATGTGCTGTGATCGGATTCGAGATCCTTTGACTTACTTCCCTCTAATATGGGTCACTGAGATGTGGGTCCTCTACTCAACGGAGTCATTTGTCAATGACTTCGAAGTTAGAGAGAAGTAAAAGNTAGTATCCTCATCCGCTGTGATCTANGCACTGTACCTTTTGNGGTTCTTTTTAAATGAACGGTCAATGGTGCATGGTTGCTG]

[+] EMBL CA765661             [GAAAGAAGGAAGGTAGAAAAATAAAGGCACTCCCTCCTTCCAAAAGACTTCGCCTAGAGGCGCAGAGGGTGCTCAAGGAGCGTGTCCAGGATATTGCGGATAAGAAAGGCATCAAGCTGAGATTTTGCAGTCTCAGGGACTGTGAAAGCCACATAAAATCGTTAGACCGTCCATGTGAGAACATCAGAACTGAAATCGGATGGCCGCCAGGGGTTCCATTTGTCCATCCACATGACCTTCCAAACAAAGCAAAGCTCATGTTTCTGGAAGCCTATGAACCAGGATGGACTGCCTCCCAGCAAGATTTAGAGGAGCAGGTCTCTGTAAATTTAGATGCATTACCAACCTTGGATATGTTTTGAATTGCAGGGTTGGATCAGTAGTTTAATGATCTCACCTACATGCTGAGGAGTGAGGAGCTAGAAATGTATTGCTGACGCCAAATGGATGTAGAAATGCATACCAAGATTACTGACAGTCTGACACCAAATGCCGTTGAGAACATTGAGCTTGAGCATCTGTAAATGTAACCTACTTACTGCTGCGATTGTGTTATATTCAGATGTGCTGTGATCGGATTCGAGATCCTTTGACTTACTTCCCTCTAATATGGGTCACTGAGATGTGGGTCCTCTACTCAACGGAGTCATTTGTCAATGACTTCGAAGTTAGAGAGAAGTAAAAGNTAGTATCCTCATCCGCTGTGATCTANGCACTGTACCTTTTGNGGTTCTTTTTAAATGAACGGTCAATGGTGCATGGTTGCTG]


>consensus_2403#0 GAAAGAAGGAAGGTAGAAAAATAAAGGCACTCCCTCCTTCCAAAAGACTTCGCCTAGAGG CGCAGAGGGTGCTCAAGGAGCGTGTCCAGGATATTGCGGATAAGAAAGGCATCAAGCTGA GATTTTGCAGTCTCAGGGACTGTGAAAGCCACATAAAATCGTTAGACCGTCCATGTGAGA ACATCAGAACTGAAATCGGATGGCCGCCAGGGGTTCCATTTGTCCATCCACATGACCTTC CAAACAAAGCAAAGCTCATGTTTCTGGAAGCCTATGAACCAGGATGGACTGCCTCCCAGC AAGATTTAGAGGAGCAGGTCTCTGTAAATTTAGATGCATTACCAACCTTGGATATGTTTT GAATTGCAGGGTTGGATCAGTAGTTTAATGATCTCACCTACATGCTGAGGAGTGAGGAGC TAGAAATGTATTGCTGACGCCAAATGGATGTAGAAATGCATACCAAGATTACTGACAGTC TGACACCAAATGCCGTTGAGAACATTGAGCTTGAGCATCTGTAAATGTAACCTACTTACT GCTGCGATTGTGTTATATTCAGATGTGCTGTGATCGGATTCGAGATCCTTTGACTTACTT CCCTCTAATATGGGTCACTGAGATGTGGGTCCTCTACTCAACGGAGTCATTTGTCAATGA CTTCGAAGTTAGAGAGAAGTAAAAGNTAGTATCCTCATCCGCTGTGATCTANGCACTGTA CCTTTTGNGGTTCTTTTTAAATGAACGGTCAATGGTGCATGGTTGCTG



consensusID : consensus_2403#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 523
fasta sequence
                              [TATGAACCCGGATGGACTGCCTCCCAGCAAGATTTAGAGGNCTCTGTAAATTTAGATGCATTACCAACCTTGGATATGTTTTGAATTGCAGGGTTGGATCAGTAGTTTAATGATCTCNCCTACATGCTGAGGAGTGAGGAGCTAGAAATGTATTGTGACGCCAAATGGATGTAGAAATGCATACCAAGATTACTGACAGTCTGACACCAAACGCCGTTGAGAACATTGAGCTTGAGCATCTGTAAATGTAACCTACTTACTGCTGCGATTGTGTTATATTCAGATGTGCTGTGATCGGATCGAGATCCTTTGACTTACTTCCCTCTAATATGGGTCACTGAGATGTGGATCCTCTCTAATATGGGTCACTGAGATGTGGATCCTCTACTCAACGGAGTCATTTGTCAATGACTCGAAGTTAGAGAGAAGTAAAGTTAGTATCCTCATCCGCTGTGATCTAGGCACTGTACTTTGTGTTCTTTTTAAATGAACGGTCAATGGTGCATGTTGCTGTAAAAAAAAA]

[+] EMBL AU068498             [TATGAACCCGGATGGACTGCCTCCCAGCAAGATTTAGAGGNCTCTGTAAATTTAGATGCATTACCAACCTTGGATATGTTTTGAATTGCAGGGTTGGATCAGTAGTTTAATGATCTCNCCTACATGCTGAGGAGTGAGGAGCTAGAAATGTATTGTGACGCCAAATGGATGTAGAAATGCATACCAAGATTACTGACAGTCTGACACCAAACGCCGTTGAGAACATTGAGCTTGAGCATCTGTAAATGTAACCTACTTACTGCTGCGATTGTGTTATATTCAGATGTGCTGTGATCGGATCGAGATCCTTTGACTTACTTCCCTCTAATATGGGTCACTGAGATGTGGATCCTCTCTAATATGGGTCACTGAGATGTGGATCCTCTACTCAACGGAGTCATTTGTCAATGACTCGAAGTTAGAGAGAAGTAAAGTTAGTATCCTCATCCGCTGTGATCTAGGCACTGTACTTTGTGTTCTTTTTAAATGAACGGTCAATGGTGCATGTTGCTGTAAAAAAAAA]


>consensus_2403#1 TATGAACCCGGATGGACTGCCTCCCAGCAAGATTTAGAGGNCTCTGTAAATTTAGATGCA TTACCAACCTTGGATATGTTTTGAATTGCAGGGTTGGATCAGTAGTTTAATGATCTCNCC TACATGCTGAGGAGTGAGGAGCTAGAAATGTATTGTGACGCCAAATGGATGTAGAAATGC ATACCAAGATTACTGACAGTCTGACACCAAACGCCGTTGAGAACATTGAGCTTGAGCATC TGTAAATGTAACCTACTTACTGCTGCGATTGTGTTATATTCAGATGTGCTGTGATCGGAT CGAGATCCTTTGACTTACTTCCCTCTAATATGGGTCACTGAGATGTGGATCCTCTCTAAT ATGGGTCACTGAGATGTGGATCCTCTACTCAACGGAGTCATTTGTCAATGACTCGAAGTT AGAGAGAAGTAAAGTTAGTATCCTCATCCGCTGTGATCTAGGCACTGTACTTTGTGTTCT TTTTAAATGAACGGTCAATGGTGCATGTTGCTGTAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2403#0      GAAAGAAGGAAGGTAGAAAAATAAAGGCACTCCCTCCTTCCAAAAGACTTCGCCTAGAGG 60
consensus_2403#1      ------------------------------------------------------------
                                                                                  

consensus_2403#0      CGCAGAGGGTGCTCAAGGAGCGTGTCCAGGATATTGCGGATAAGAAAGGCATCAAGCTGA 120
consensus_2403#1      ------------------------------------------------------------
                                                                                  

consensus_2403#0      GATTTTGCAGTCTCAGGGACTGTGAAAGCCACATAAAATCGTTAGACCGTCCATGTGAGA 180
consensus_2403#1      ------------------------------------------------------------
                                                                                  

consensus_2403#0      ACATCAGAACTGAAATCGGATGGCCGCCAGGGGTTCCATTTGTCCATCCACATGACCTTC 240
consensus_2403#1      ------------------------------------------------------------
                                                                                  

consensus_2403#0      CAAACAAAGCAAAGCTCATGTTTCTGGAAGCCTATGAACCAGGATGGACTGCCTCCCAGC 300
consensus_2403#1      --------------------------------TATGAACCCGGATGGACTGCCTCCCAGC 28
                                                      ******** *******************

consensus_2403#0      AAGATTTAGAGGAGCAGGTCTCTGTAAATTTAGATGCATTACCAACCTTGGATATGTTTT 360
consensus_2403#1      AAGATTTAGAGG------NCTCTGTAAATTTAGATGCATTACCAACCTTGGATATGTTTT 82
                      ************       *****************************************

consensus_2403#0      GAATTGCAGGGTTGGATCAGTAGTTTAATGATCTCACCTACATGCTGAGGAGTGAGGAGC 420
consensus_2403#1      GAATTGCAGGGTTGGATCAGTAGTTTAATGATCTCNCCTACATGCTGAGGAGTGAGGAGC 142
                      *********************************** ************************

consensus_2403#0      TAGAAATGTATTGCTGACGCCAAATGGATGTAGAAATGCATACCAAGATTACTGACAGTC 480
consensus_2403#1      TAGAAATGTATTG-TGACGCCAAATGGATGTAGAAATGCATACCAAGATTACTGACAGTC 201
                      ************* **********************************************

consensus_2403#0      TGACACCAAATGCCGTTGAGAACATTGAGCTTGAGCATCTGTAAATGTAACCTACTTACT 540
consensus_2403#1      TGACACCAAACGCCGTTGAGAACATTGAGCTTGAGCATCTGTAAATGTAACCTACTTACT 261
                      ********** *************************************************

consensus_2403#0      GCTGCGATTGTGTTATATTCAGATGTGCTGTGATCGGATTCGAGATCCTTTGACTTACTT 600
consensus_2403#1      GCTGCGATTGTGTTATATTCAGATGTGCTGTGATCGGAT-CGAGATCCTTTGACTTACTT 320
                      *************************************** ********************

consensus_2403#0      CCCTCTAATATGGGTCACTGAGATGTGGGTCCTCT------------------------- 635
consensus_2403#1      CCCTCTAATATGGGTCACTGAGATGTGGATCCTCTCTAATATGGGTCACTGAGATGTGGA 380
                      **************************** ******                         

consensus_2403#0      ------ACTCAACGGAGTCATTTGTCAATGACTTCGAAGTTAGAGAGAAGTAAAAGNTAG 689
consensus_2403#1      TCCTCTACTCAACGGAGTCATTTGTCAATGACT-CGAAGTTAGAGAGAAGTAAA-GTTAG 438
                            *************************** ******************** * ***

consensus_2403#0      TATCCTCATCCGCTGTGATCTANGCACTGTACCTTTTGNGGTTCTTTTTAAATGAACGGT 749
consensus_2403#1      TATCCTCATCCGCTGTGATCTAGGCACTGTACTTTGT---GTTCTTTTTAAATGAACGGT 495
                      ********************** ********* ** *   ********************

consensus_2403#0      CAATGGTGCATGGTTGCTG---------- 768
consensus_2403#1      CAATGGTGCATG-TTGCTGTAAAAAAAAA 523
                      ************ ******          




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)