These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2403#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 768 fasta sequence [GAAAGAAGGAAGGTAGAAAAATAAAGGCACTCCCTCCTTCCAAAAGACTTCGCCTAGAGGCGCAGAGGGTGCTCAAGGAGCGTGTCCAGGATATTGCGGATAAGAAAGGCATCAAGCTGAGATTTTGCAGTCTCAGGGACTGTGAAAGCCACATAAAATCGTTAGACCGTCCATGTGAGAACATCAGAACTGAAATCGGATGGCCGCCAGGGGTTCCATTTGTCCATCCACATGACCTTCCAAACAAAGCAAAGCTCATGTTTCTGGAAGCCTATGAACCAGGATGGACTGCCTCCCAGCAAGATTTAGAGGAGCAGGTCTCTGTAAATTTAGATGCATTACCAACCTTGGATATGTTTTGAATTGCAGGGTTGGATCAGTAGTTTAATGATCTCACCTACATGCTGAGGAGTGAGGAGCTAGAAATGTATTGCTGACGCCAAATGGATGTAGAAATGCATACCAAGATTACTGACAGTCTGACACCAAATGCCGTTGAGAACATTGAGCTTGAGCATCTGTAAATGTAACCTACTTACTGCTGCGATTGTGTTATATTCAGATGTGCTGTGATCGGATTCGAGATCCTTTGACTTACTTCCCTCTAATATGGGTCACTGAGATGTGGGTCCTCTACTCAACGGAGTCATTTGTCAATGACTTCGAAGTTAGAGAGAAGTAAAAGNTAGTATCCTCATCCGCTGTGATCTANGCACTGTACCTTTTGNGGTTCTTTTTAAATGAACGGTCAATGGTGCATGGTTGCTG] [+] EMBL CA765661 [GAAAGAAGGAAGGTAGAAAAATAAAGGCACTCCCTCCTTCCAAAAGACTTCGCCTAGAGGCGCAGAGGGTGCTCAAGGAGCGTGTCCAGGATATTGCGGATAAGAAAGGCATCAAGCTGAGATTTTGCAGTCTCAGGGACTGTGAAAGCCACATAAAATCGTTAGACCGTCCATGTGAGAACATCAGAACTGAAATCGGATGGCCGCCAGGGGTTCCATTTGTCCATCCACATGACCTTCCAAACAAAGCAAAGCTCATGTTTCTGGAAGCCTATGAACCAGGATGGACTGCCTCCCAGCAAGATTTAGAGGAGCAGGTCTCTGTAAATTTAGATGCATTACCAACCTTGGATATGTTTTGAATTGCAGGGTTGGATCAGTAGTTTAATGATCTCACCTACATGCTGAGGAGTGAGGAGCTAGAAATGTATTGCTGACGCCAAATGGATGTAGAAATGCATACCAAGATTACTGACAGTCTGACACCAAATGCCGTTGAGAACATTGAGCTTGAGCATCTGTAAATGTAACCTACTTACTGCTGCGATTGTGTTATATTCAGATGTGCTGTGATCGGATTCGAGATCCTTTGACTTACTTCCCTCTAATATGGGTCACTGAGATGTGGGTCCTCTACTCAACGGAGTCATTTGTCAATGACTTCGAAGTTAGAGAGAAGTAAAAGNTAGTATCCTCATCCGCTGTGATCTANGCACTGTACCTTTTGNGGTTCTTTTTAAATGAACGGTCAATGGTGCATGGTTGCTG] consensusID : consensus_2403#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 523 fasta sequence [TATGAACCCGGATGGACTGCCTCCCAGCAAGATTTAGAGGNCTCTGTAAATTTAGATGCATTACCAACCTTGGATATGTTTTGAATTGCAGGGTTGGATCAGTAGTTTAATGATCTCNCCTACATGCTGAGGAGTGAGGAGCTAGAAATGTATTGTGACGCCAAATGGATGTAGAAATGCATACCAAGATTACTGACAGTCTGACACCAAACGCCGTTGAGAACATTGAGCTTGAGCATCTGTAAATGTAACCTACTTACTGCTGCGATTGTGTTATATTCAGATGTGCTGTGATCGGATCGAGATCCTTTGACTTACTTCCCTCTAATATGGGTCACTGAGATGTGGATCCTCTCTAATATGGGTCACTGAGATGTGGATCCTCTACTCAACGGAGTCATTTGTCAATGACTCGAAGTTAGAGAGAAGTAAAGTTAGTATCCTCATCCGCTGTGATCTAGGCACTGTACTTTGTGTTCTTTTTAAATGAACGGTCAATGGTGCATGTTGCTGTAAAAAAAAA] [+] EMBL AU068498 [TATGAACCCGGATGGACTGCCTCCCAGCAAGATTTAGAGGNCTCTGTAAATTTAGATGCATTACCAACCTTGGATATGTTTTGAATTGCAGGGTTGGATCAGTAGTTTAATGATCTCNCCTACATGCTGAGGAGTGAGGAGCTAGAAATGTATTGTGACGCCAAATGGATGTAGAAATGCATACCAAGATTACTGACAGTCTGACACCAAACGCCGTTGAGAACATTGAGCTTGAGCATCTGTAAATGTAACCTACTTACTGCTGCGATTGTGTTATATTCAGATGTGCTGTGATCGGATCGAGATCCTTTGACTTACTTCCCTCTAATATGGGTCACTGAGATGTGGATCCTCTCTAATATGGGTCACTGAGATGTGGATCCTCTACTCAACGGAGTCATTTGTCAATGACTCGAAGTTAGAGAGAAGTAAAGTTAGTATCCTCATCCGCTGTGATCTAGGCACTGTACTTTGTGTTCTTTTTAAATGAACGGTCAATGGTGCATGTTGCTGTAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2403#0 GAAAGAAGGAAGGTAGAAAAATAAAGGCACTCCCTCCTTCCAAAAGACTTCGCCTAGAGG 60 consensus_2403#1 ------------------------------------------------------------ consensus_2403#0 CGCAGAGGGTGCTCAAGGAGCGTGTCCAGGATATTGCGGATAAGAAAGGCATCAAGCTGA 120 consensus_2403#1 ------------------------------------------------------------ consensus_2403#0 GATTTTGCAGTCTCAGGGACTGTGAAAGCCACATAAAATCGTTAGACCGTCCATGTGAGA 180 consensus_2403#1 ------------------------------------------------------------ consensus_2403#0 ACATCAGAACTGAAATCGGATGGCCGCCAGGGGTTCCATTTGTCCATCCACATGACCTTC 240 consensus_2403#1 ------------------------------------------------------------ consensus_2403#0 CAAACAAAGCAAAGCTCATGTTTCTGGAAGCCTATGAACCAGGATGGACTGCCTCCCAGC 300 consensus_2403#1 --------------------------------TATGAACCCGGATGGACTGCCTCCCAGC 28 ******** ******************* consensus_2403#0 AAGATTTAGAGGAGCAGGTCTCTGTAAATTTAGATGCATTACCAACCTTGGATATGTTTT 360 consensus_2403#1 AAGATTTAGAGG------NCTCTGTAAATTTAGATGCATTACCAACCTTGGATATGTTTT 82 ************ ***************************************** consensus_2403#0 GAATTGCAGGGTTGGATCAGTAGTTTAATGATCTCACCTACATGCTGAGGAGTGAGGAGC 420 consensus_2403#1 GAATTGCAGGGTTGGATCAGTAGTTTAATGATCTCNCCTACATGCTGAGGAGTGAGGAGC 142 *********************************** ************************ consensus_2403#0 TAGAAATGTATTGCTGACGCCAAATGGATGTAGAAATGCATACCAAGATTACTGACAGTC 480 consensus_2403#1 TAGAAATGTATTG-TGACGCCAAATGGATGTAGAAATGCATACCAAGATTACTGACAGTC 201 ************* ********************************************** consensus_2403#0 TGACACCAAATGCCGTTGAGAACATTGAGCTTGAGCATCTGTAAATGTAACCTACTTACT 540 consensus_2403#1 TGACACCAAACGCCGTTGAGAACATTGAGCTTGAGCATCTGTAAATGTAACCTACTTACT 261 ********** ************************************************* consensus_2403#0 GCTGCGATTGTGTTATATTCAGATGTGCTGTGATCGGATTCGAGATCCTTTGACTTACTT 600 consensus_2403#1 GCTGCGATTGTGTTATATTCAGATGTGCTGTGATCGGAT-CGAGATCCTTTGACTTACTT 320 *************************************** ******************** consensus_2403#0 CCCTCTAATATGGGTCACTGAGATGTGGGTCCTCT------------------------- 635 consensus_2403#1 CCCTCTAATATGGGTCACTGAGATGTGGATCCTCTCTAATATGGGTCACTGAGATGTGGA 380 **************************** ****** consensus_2403#0 ------ACTCAACGGAGTCATTTGTCAATGACTTCGAAGTTAGAGAGAAGTAAAAGNTAG 689 consensus_2403#1 TCCTCTACTCAACGGAGTCATTTGTCAATGACT-CGAAGTTAGAGAGAAGTAAA-GTTAG 438 *************************** ******************** * *** consensus_2403#0 TATCCTCATCCGCTGTGATCTANGCACTGTACCTTTTGNGGTTCTTTTTAAATGAACGGT 749 consensus_2403#1 TATCCTCATCCGCTGTGATCTAGGCACTGTACTTTGT---GTTCTTTTTAAATGAACGGT 495 ********************** ********* ** * ******************** consensus_2403#0 CAATGGTGCATGGTTGCTG---------- 768 consensus_2403#1 CAATGGTGCATG-TTGCTGTAAAAAAAAA 523 ************ ****** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||