cluster # 2417

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 2417 cluster # 2417 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2417#0 length = 2863 sequences # 1

consensus_2417#1 length = 832 sequences # 1

consensusID : consensus_2417#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 2863
fasta sequence

                              [ACTGCTACTCTCTCCATCAGTCCACAAAGAGGAAGGTGGAGGAAGAAGACCTGCAAGGTGAGAGGAGGCCAATGGTGAAGTTCTCCAAGCAGTTCGAGGGCCAGCTTGTGCCCGAATGGAAGGACGCCTTCGTGGACTACTGGCAGCTCAAGAAGGACATCAAGAGGCTGCAGGCTGCGGAGGCGGAGGCGGCCGGGGTGGCGGCGACGACGCCGCTGTCGCAGTGCCAGGCGCCGGTGGCGGCGGCTCACTGGGTCATGAGGCTGCCGTTCTTGCACCCCCATGGACACCACCACAAGGAGCATGGTGCCATCCAGGTGCATAGGAAGCTGGCCAGCGGCGGAGGCGGCGGCGGCGGCGCGGTGGCCGGAGAGGTGTACGAAACGGAGCTCGTGGACGGCGGCGCCGGGTTCGCGGACGGCGAGGCGGCGAGGGCCTTCTTCGCGAGGCTGGACGAGCAGCTCAACAAGGTGAACCGCTTCTACGAGCGGAAGGAGGCCGAGTTCGTGGAGCGCGGCGAGTCGCTCCGCCGCCAGCTGCAGATCCTCGCCGAGCTCCGGGCCGCCGTCGTCGCCGAGCAGCAGCGCGACGGGCGCCGCCGCCGATGCGGCAACGGCGGCGACTCCTCGCCGCCGGACACGGAGGATCCCTCCGTCTCCTGCTCCATCCTCCACGGAGATCAGTCCCTCAGAGGCACTTCTGAGCAAGAACAGGAAGGCCAGGAAAAGCTCACCAAAGACATGATTGCAAGGAGCCCTGACGAAGGAGACGATGATCAGCTCACCATCCCTCAAGAATTGGGCGATTCAGGGAGGCTTGGCAGGCCAAGAGAAGAAGCCGCCAACACCAGGCCGAGGACGACGCTCCCAGGAGGCAGGGCGGTCACCTGCCAAGGCAGAAGCGTCAGGATCAACATCCCGGTGACCACGCCGACGAGGACCGTCACCGCCATCCGTGAGCTTCTGTTCGACGACATGCTAAGCCAGTCGAGGAGGAGCGGTAGCGCCAACGGTACAAAATGCGGCGACAAGCTGAGCATCAACAAGAGGAAGGTGCATCAGGCAGAGAAGATGATAAGGGGTGCCCTGATTGAGCTGTACAAGGGATTGGGGTATCTCAAGACATACCGGAGCTTAAACATGATGGCGTTTGTGAAGATTTTGAAGAAATTTGACAAGGTTACAGCAAAGGAAGCTCAGTCAATATACCTTAAAGTAGTGGAGAGCTCCTACTTCAATGTCTCTGACAAGGTAATTAGGCTAATGGACGATGTGGATGAGCTGTTTGTGAGGCATTTTGCAGAAGGTGACAAACGGAAAGCAATGAAGTATCTTAAGCCAAATCAGAGGGAAGAATCACACACCACAACATTTTTCATAGGGCTATTCACTGGTGGCTTTGCAGCATTATTCATTGGTTATTGTATCATGGCACACATTGCTGGGATGTACACCCAGCAGTCAAACAAGGTCTACATGGCAACATCATATCCTGTCCTGAGCATGTTCAGCCTCTTCTTTCTGCATCTCTTCCTCTACGGATGCAACATCTTCATGTGGAGAAAGACACGCATAAACTACACATTCATATTTGAATTCACGCCTACCAAAGAGCTGAAGTATCGTGATGTGTTCCTGATTTGCACTACTTCCATGACAATTGTCATTGGTGTTATGTTTGCACACCTGACACTCATTGTCAAAGGGTATTCGTCATGTGCAGTCCAAGCAATACCAGGAGCTCTACTTCTGGTTTTCTTGCTAATATTGGTCTGCCCTTTCAACATACTCTACCGATCATGTCGTTACCACTTCCTAACAGTGATCAGAAACATCATTCTAACCCCTTTCTACAAGGTTGTCATGGTTGATTTCTTCATGGCTGATCAGCTTTGCAGCCAGGTACCACTGCTTAGGAGCCTAGAGTATCTGGCGTGCTATTACATAACCAGCAGGCTACAAGACACAAGACTATGGCTACTGCACCAGAGTGAAGCACTTTAGAGATTTGGCTTATGCAGTATCCTTCCTACCTTACTACTGGAGGGCCATGCAGTGCGCAAGGAGATGGTTTGACGAGGGGGACATAAATCACATTGTCAACCTTGGGAAGTATGTGTCAGCAATGCTTGCTGCTGGAACAAAAGTGGCATACGAGAATGATAACAGTGCTGGATGGCTGTCACTTGTTGTCATTGTGTCGAGTCTCGCCACTATCTACCAACTATACTGGGACTTTGTCAAGGATTGGGGTCTTCTGCAGTTTAACTCCAAGAACCCTTGGCTCCGTAATGATCTGATACTCAAACAAAAGTACATCTATTTCCTTTCCATGGGTCTGAACATTATCTTGAGGCTGGCATGGCTTCAGACCGTCATCCACCCTAACATCGGAAGCCTGGATTCCAGAGTAACTTTGTTCATCTTGGCAGCTCTTGAGGTGATTCGACGAGGCCACTGGAACTTCTACAGGTTGGAAAACGAGCACCTAAACAATGCAGGGAAATTCAGAGCTGTGAAGGTTGTTCCACTTCCTTTTCATGAAGTGGAAGAGGACTAACAAAATAGGGCATCATCATCATCATTGCAGCAGATTCTAGGGATTCAGAACTCTAAGCAGTTCAGATGTAACACCAACTAATGTTAGAAAGCCTGCACTACCCTATTATGATTCAATTAAATTTTTTGGTGTGAGGAATAATGGGCATTTAACATGTTCAGTTTGGAGAAGATACAAGCAAAAGGCAAACACTATATAGATGTAGAATACAGGGGTTCCAATTAGTTTACCAAGATCGAATACTAATCTCGTGGAGTTGAAGCGAATTCACTTGTGGAAAAATCCAATCAATCACAATTGTTCT]

[+] EMBL AK067110             [ACTGCTACTCTCTCCATCAGTCCACAAAGAGGAAGGTGGAGGAAGAAGACCTGCAAGGTGAGAGGAGGCCAATGGTGAAGTTCTCCAAGCAGTTCGAGGGCCAGCTTGTGCCCGAATGGAAGGACGCCTTCGTGGACTACTGGCAGCTCAAGAAGGACATCAAGAGGCTGCAGGCTGCGGAGGCGGAGGCGGCCGGGGTGGCGGCGACGACGCCGCTGTCGCAGTGCCAGGCGCCGGTGGCGGCGGCTCACTGGGTCATGAGGCTGCCGTTCTTGCACCCCCATGGACACCACCACAAGGAGCATGGTGCCATCCAGGTGCATAGGAAGCTGGCCAGCGGCGGAGGCGGCGGCGGCGGCGCGGTGGCCGGAGAGGTGTACGAAACGGAGCTCGTGGACGGCGGCGCCGGGTTCGCGGACGGCGAGGCGGCGAGGGCCTTCTTCGCGAGGCTGGACGAGCAGCTCAACAAGGTGAACCGCTTCTACGAGCGGAAGGAGGCCGAGTTCGTGGAGCGCGGCGAGTCGCTCCGCCGCCAGCTGCAGATCCTCGCCGAGCTCCGGGCCGCCGTCGTCGCCGAGCAGCAGCGCGACGGGCGCCGCCGCCGATGCGGCAACGGCGGCGACTCCTCGCCGCCGGACACGGAGGATCCCTCCGTCTCCTGCTCCATCCTCCACGGAGATCAGTCCCTCAGAGGCACTTCTGAGCAAGAACAGGAAGGCCAGGAAAAGCTCACCAAAGACATGATTGCAAGGAGCCCTGACGAAGGAGACGATGATCAGCTCACCATCCCTCAAGAATTGGGCGATTCAGGGAGGCTTGGCAGGCCAAGAGAAGAAGCCGCCAACACCAGGCCGAGGACGACGCTCCCAGGAGGCAGGGCGGTCACCTGCCAAGGCAGAAGCGTCAGGATCAACATCCCGGTGACCACGCCGACGAGGACCGTCACCGCCATCCGTGAGCTTCTGTTCGACGACATGCTAAGCCAGTCGAGGAGGAGCGGTAGCGCCAACGGTACAAAATGCGGCGACAAGCTGAGCATCAACAAGAGGAAGGTGCATCAGGCAGAGAAGATGATAAGGGGTGCCCTGATTGAGCTGTACAAGGGATTGGGGTATCTCAAGACATACCGGAGCTTAAACATGATGGCGTTTGTGAAGATTTTGAAGAAATTTGACAAGGTTACAGCAAAGGAAGCTCAGTCAATATACCTTAAAGTAGTGGAGAGCTCCTACTTCAATGTCTCTGACAAGGTAATTAGGCTAATGGACGATGTGGATGAGCTGTTTGTGAGGCATTTTGCAGAAGGTGACAAACGGAAAGCAATGAAGTATCTTAAGCCAAATCAGAGGGAAGAATCACACACCACAACATTTTTCATAGGGCTATTCACTGGTGGCTTTGCAGCATTATTCATTGGTTATTGTATCATGGCACACATTGCTGGGATGTACACCCAGCAGTCAAACAAGGTCTACATGGCAACATCATATCCTGTCCTGAGCATGTTCAGCCTCTTCTTTCTGCATCTCTTCCTCTACGGATGCAACATCTTCATGTGGAGAAAGACACGCATAAACTACACATTCATATTTGAATTCACGCCTACCAAAGAGCTGAAGTATCGTGATGTGTTCCTGATTTGCACTACTTCCATGACAATTGTCATTGGTGTTATGTTTGCACACCTGACACTCATTGTCAAAGGGTATTCGTCATGTGCAGTCCAAGCAATACCAGGAGCTCTACTTCTGGTTTTCTTGCTAATATTGGTCTGCCCTTTCAACATACTCTACCGATCATGTCGTTACCACTTCCTAACAGTGATCAGAAACATCATTCTAACCCCTTTCTACAAGGTTGTCATGGTTGATTTCTTCATGGCTGATCAGCTTTGCAGCCAGGTACCACTGCTTAGGAGCCTAGAGTATCTGGCGTGCTATTACATAACCAGCAGGCTACAAGACACAAGACTATGGCTACTGCACCAGAGTGAAGCACTTTAGAGATTTGGCTTATGCAGTATCCTTCCTACCTTACTACTGGAGGGCCATGCAGTGCGCAAGGAGATGGTTTGACGAGGGGGACATAAATCACATTGTCAACCTTGGGAAGTATGTGTCAGCAATGCTTGCTGCTGGAACAAAAGTGGCATACGAGAATGATAACAGTGCTGGATGGCTGTCACTTGTTGTCATTGTGTCGAGTCTCGCCACTATCTACCAACTATACTGGGACTTTGTCAAGGATTGGGGTCTTCTGCAGTTTAACTCCAAGAACCCTTGGCTCCGTAATGATCTGATACTCAAACAAAAGTACATCTATTTCCTTTCCATGGGTCTGAACATTATCTTGAGGCTGGCATGGCTTCAGACCGTCATCCACCCTAACATCGGAAGCCTGGATTCCAGAGTAACTTTGTTCATCTTGGCAGCTCTTGAGGTGATTCGACGAGGCCACTGGAACTTCTACAGGTTGGAAAACGAGCACCTAAACAATGCAGGGAAATTCAGAGCTGTGAAGGTTGTTCCACTTCCTTTTCATGAAGTGGAAGAGGACTAACAAAATAGGGCATCATCATCATCATTGCAGCAGATTCTAGGGATTCAGAACTCTAAGCAGTTCAGATGTAACACCAACTAATGTTAGAAAGCCTGCACTACCCTATTATGATTCAATTAAATTTTTTGGTGTGAGGAATAATGGGCATTTAACATGTTCAGTTTGGAGAAGATACAAGCAAAAGGCAAACACTATATAGATGTAGAATACAGGGGTTCCAATTAGTTTACCAAGATCGAATACTAATCTCGTGGAGTTGAAGCGAATTCACTTGTGGAAAAATCCAATCAATCACAATTGTTCT]




>consensus_2417#0
ACTGCTACTCTCTCCATCAGTCCACAAAGAGGAAGGTGGAGGAAGAAGACCTGCAAGGTG
AGAGGAGGCCAATGGTGAAGTTCTCCAAGCAGTTCGAGGGCCAGCTTGTGCCCGAATGGA
AGGACGCCTTCGTGGACTACTGGCAGCTCAAGAAGGACATCAAGAGGCTGCAGGCTGCGG
AGGCGGAGGCGGCCGGGGTGGCGGCGACGACGCCGCTGTCGCAGTGCCAGGCGCCGGTGG
CGGCGGCTCACTGGGTCATGAGGCTGCCGTTCTTGCACCCCCATGGACACCACCACAAGG
AGCATGGTGCCATCCAGGTGCATAGGAAGCTGGCCAGCGGCGGAGGCGGCGGCGGCGGCG
CGGTGGCCGGAGAGGTGTACGAAACGGAGCTCGTGGACGGCGGCGCCGGGTTCGCGGACG
GCGAGGCGGCGAGGGCCTTCTTCGCGAGGCTGGACGAGCAGCTCAACAAGGTGAACCGCT
TCTACGAGCGGAAGGAGGCCGAGTTCGTGGAGCGCGGCGAGTCGCTCCGCCGCCAGCTGC
AGATCCTCGCCGAGCTCCGGGCCGCCGTCGTCGCCGAGCAGCAGCGCGACGGGCGCCGCC
GCCGATGCGGCAACGGCGGCGACTCCTCGCCGCCGGACACGGAGGATCCCTCCGTCTCCT
GCTCCATCCTCCACGGAGATCAGTCCCTCAGAGGCACTTCTGAGCAAGAACAGGAAGGCC
AGGAAAAGCTCACCAAAGACATGATTGCAAGGAGCCCTGACGAAGGAGACGATGATCAGC
TCACCATCCCTCAAGAATTGGGCGATTCAGGGAGGCTTGGCAGGCCAAGAGAAGAAGCCG
CCAACACCAGGCCGAGGACGACGCTCCCAGGAGGCAGGGCGGTCACCTGCCAAGGCAGAA
GCGTCAGGATCAACATCCCGGTGACCACGCCGACGAGGACCGTCACCGCCATCCGTGAGC
TTCTGTTCGACGACATGCTAAGCCAGTCGAGGAGGAGCGGTAGCGCCAACGGTACAAAAT
GCGGCGACAAGCTGAGCATCAACAAGAGGAAGGTGCATCAGGCAGAGAAGATGATAAGGG
GTGCCCTGATTGAGCTGTACAAGGGATTGGGGTATCTCAAGACATACCGGAGCTTAAACA
TGATGGCGTTTGTGAAGATTTTGAAGAAATTTGACAAGGTTACAGCAAAGGAAGCTCAGT
CAATATACCTTAAAGTAGTGGAGAGCTCCTACTTCAATGTCTCTGACAAGGTAATTAGGC
TAATGGACGATGTGGATGAGCTGTTTGTGAGGCATTTTGCAGAAGGTGACAAACGGAAAG
CAATGAAGTATCTTAAGCCAAATCAGAGGGAAGAATCACACACCACAACATTTTTCATAG
GGCTATTCACTGGTGGCTTTGCAGCATTATTCATTGGTTATTGTATCATGGCACACATTG
CTGGGATGTACACCCAGCAGTCAAACAAGGTCTACATGGCAACATCATATCCTGTCCTGA
GCATGTTCAGCCTCTTCTTTCTGCATCTCTTCCTCTACGGATGCAACATCTTCATGTGGA
GAAAGACACGCATAAACTACACATTCATATTTGAATTCACGCCTACCAAAGAGCTGAAGT
ATCGTGATGTGTTCCTGATTTGCACTACTTCCATGACAATTGTCATTGGTGTTATGTTTG
CACACCTGACACTCATTGTCAAAGGGTATTCGTCATGTGCAGTCCAAGCAATACCAGGAG
CTCTACTTCTGGTTTTCTTGCTAATATTGGTCTGCCCTTTCAACATACTCTACCGATCAT
GTCGTTACCACTTCCTAACAGTGATCAGAAACATCATTCTAACCCCTTTCTACAAGGTTG
TCATGGTTGATTTCTTCATGGCTGATCAGCTTTGCAGCCAGGTACCACTGCTTAGGAGCC
TAGAGTATCTGGCGTGCTATTACATAACCAGCAGGCTACAAGACACAAGACTATGGCTAC
TGCACCAGAGTGAAGCACTTTAGAGATTTGGCTTATGCAGTATCCTTCCTACCTTACTAC
TGGAGGGCCATGCAGTGCGCAAGGAGATGGTTTGACGAGGGGGACATAAATCACATTGTC
AACCTTGGGAAGTATGTGTCAGCAATGCTTGCTGCTGGAACAAAAGTGGCATACGAGAAT
GATAACAGTGCTGGATGGCTGTCACTTGTTGTCATTGTGTCGAGTCTCGCCACTATCTAC
CAACTATACTGGGACTTTGTCAAGGATTGGGGTCTTCTGCAGTTTAACTCCAAGAACCCT
TGGCTCCGTAATGATCTGATACTCAAACAAAAGTACATCTATTTCCTTTCCATGGGTCTG
AACATTATCTTGAGGCTGGCATGGCTTCAGACCGTCATCCACCCTAACATCGGAAGCCTG
GATTCCAGAGTAACTTTGTTCATCTTGGCAGCTCTTGAGGTGATTCGACGAGGCCACTGG
AACTTCTACAGGTTGGAAAACGAGCACCTAAACAATGCAGGGAAATTCAGAGCTGTGAAG
GTTGTTCCACTTCCTTTTCATGAAGTGGAAGAGGACTAACAAAATAGGGCATCATCATCA
TCATTGCAGCAGATTCTAGGGATTCAGAACTCTAAGCAGTTCAGATGTAACACCAACTAA
TGTTAGAAAGCCTGCACTACCCTATTATGATTCAATTAAATTTTTTGGTGTGAGGAATAA
TGGGCATTTAACATGTTCAGTTTGGAGAAGATACAAGCAAAAGGCAAACACTATATAGAT
GTAGAATACAGGGGTTCCAATTAGTTTACCAAGATCGAATACTAATCTCGTGGAGTTGAA
GCGAATTCACTTGTGGAAAAATCCAATCAATCACAATTGTTCT

consensusID : consensus_2417#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 832
fasta sequence

                              [TCAAGGGAAATTTTCAGCAATTTTCATGGTTACGGGTGTTCGTAAAAGTAATAACTGTATCTGTTCTGCTGTTGGCACGTGTGCAATGCAATGCAGGTGCATAGGAAGCTGGCCAGCGGCGGAGGCGGCGGCGGCGGCGCGGTGGCCGGAGAGGTGTACGAAACGGAGCTCGTGGACGGCGGCGCCGGGTTCGCGGACGGCGAGGCGGCGAGGGCCTTCTTCGCGAGGCTGGACGAGCAGCTCAACAAGGTGAACCGCTTCTACGAGCGGAAGGAGGCCGAGTTCGTGGAGCGCGGCGAGTCGCTCCGCCGCCAGCTGCAGATCCTCGCCGAGCTCCGGGCCGCCGTCGTCGCCGAGCAGCAGCGCGACGGGCGCCGCCGCCGATGCGGCAACGGCGGCGACTCCTCGCCGCCGGACACGGAGGATCCCTCCGTCTCCTGCTCCATCCTCCACGGTACGTGCGTACATACTCTCCAGTCTCCATCTCTCTTCTGCTAACACCTGCACGTACAAAGACATGATTGCAAGGAGCCCTGACGAAGGAGACGATGATCAGCTCACCATCCCTCAAGAATTGGGCGATTCAGGGAGGCTTGGCAGGCCAAGAGAAGAAGCCGCCAACACCAGGCCGAGGACGACGCTCCCAGGAGGCAGGGCGGTCACCTGCCAAGGCAGAAGCGTCAGGATCAACATCCCGGTGACCACGCCGACGAGGACCGTCACCGCCATCCGTGAGCTTCTGTTCGACGACATGCTAAGCCAGTCGAGGAGGAGCGGTAGCGCCAACGGTACAAAATGCGGCGACAAGCGGTAAGTGTAACTGACATGTAAT]

[-] EMBL AK109204             [TCAAGGGAAATTTTCAGCAATTTTCATGGTTACGGGTGTTCGTAAAAGTAATAACTGTATCTGTTCTGCTGTTGGCACGTGTGCAATGCAATGCAGGTGCATAGGAAGCTGGCCAGCGGCGGAGGCGGCGGCGGCGGCGCGGTGGCCGGAGAGGTGTACGAAACGGAGCTCGTGGACGGCGGCGCCGGGTTCGCGGACGGCGAGGCGGCGAGGGCCTTCTTCGCGAGGCTGGACGAGCAGCTCAACAAGGTGAACCGCTTCTACGAGCGGAAGGAGGCCGAGTTCGTGGAGCGCGGCGAGTCGCTCCGCCGCCAGCTGCAGATCCTCGCCGAGCTCCGGGCCGCCGTCGTCGCCGAGCAGCAGCGCGACGGGCGCCGCCGCCGATGCGGCAACGGCGGCGACTCCTCGCCGCCGGACACGGAGGATCCCTCCGTCTCCTGCTCCATCCTCCACGGTACGTGCGTACATACTCTCCAGTCTCCATCTCTCTTCTGCTAACACCTGCACGTACAAAGACATGATTGCAAGGAGCCCTGACGAAGGAGACGATGATCAGCTCACCATCCCTCAAGAATTGGGCGATTCAGGGAGGCTTGGCAGGCCAAGAGAAGAAGCCGCCAACACCAGGCCGAGGACGACGCTCCCAGGAGGCAGGGCGGTCACCTGCCAAGGCAGAAGCGTCAGGATCAACATCCCGGTGACCACGCCGACGAGGACCGTCACCGCCATCCGTGAGCTTCTGTTCGACGACATGCTAAGCCAGTCGAGGAGGAGCGGTAGCGCCAACGGTACAAAATGCGGCGACAAGCGGTAAGTGTAACTGACATGTAAT]




>consensus_2417#1
TCAAGGGAAATTTTCAGCAATTTTCATGGTTACGGGTGTTCGTAAAAGTAATAACTGTAT
CTGTTCTGCTGTTGGCACGTGTGCAATGCAATGCAGGTGCATAGGAAGCTGGCCAGCGGC
GGAGGCGGCGGCGGCGGCGCGGTGGCCGGAGAGGTGTACGAAACGGAGCTCGTGGACGGC
GGCGCCGGGTTCGCGGACGGCGAGGCGGCGAGGGCCTTCTTCGCGAGGCTGGACGAGCAG
CTCAACAAGGTGAACCGCTTCTACGAGCGGAAGGAGGCCGAGTTCGTGGAGCGCGGCGAG
TCGCTCCGCCGCCAGCTGCAGATCCTCGCCGAGCTCCGGGCCGCCGTCGTCGCCGAGCAG
CAGCGCGACGGGCGCCGCCGCCGATGCGGCAACGGCGGCGACTCCTCGCCGCCGGACACG
GAGGATCCCTCCGTCTCCTGCTCCATCCTCCACGGTACGTGCGTACATACTCTCCAGTCT
CCATCTCTCTTCTGCTAACACCTGCACGTACAAAGACATGATTGCAAGGAGCCCTGACGA
AGGAGACGATGATCAGCTCACCATCCCTCAAGAATTGGGCGATTCAGGGAGGCTTGGCAG
GCCAAGAGAAGAAGCCGCCAACACCAGGCCGAGGACGACGCTCCCAGGAGGCAGGGCGGT
CACCTGCCAAGGCAGAAGCGTCAGGATCAACATCCCGGTGACCACGCCGACGAGGACCGT
CACCGCCATCCGTGAGCTTCTGTTCGACGACATGCTAAGCCAGTCGAGGAGGAGCGGTAG
CGCCAACGGTACAAAATGCGGCGACAAGCGGTAAGTGTAACTGACATGTAAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2417#0      ACTGCTACTCTCTCCATCAGTCCACAAAGAGGAAGGTGGAGGAAGAAGACCTGCAAGGTG 60
consensus_2417#1      ------------------------------------------------------------
                                                                                  

consensus_2417#0      AGAGGAGGCCAATGGTGAAGTTCTCCAAGCAGTTCGAGGGCCAGCTTGTGCCCGAATGGA 120
consensus_2417#1      ------------------------------------------------------------
                                                                                  

consensus_2417#0      AGGACGCCTTCGTGGACTACTGGCAGCTCAAGAAGGACATCAAGAGGCTGCAGGCTGCGG 180
consensus_2417#1      ------------------------------------------------------------
                                                                                  

consensus_2417#0      AGGCGGAGGCGGCCGGGGTGGCGGCGACGACGCCGCTGTCGCAGTGCCAGGCGCCGGTGG 240
consensus_2417#1      ----------------------------------------------TCAAGGGAAATTTT 14
                                                                     ** * *    *  

consensus_2417#0      CGGCGGCTCACTGGGTCATGAGGCT--GCCGTTCTTGCACCCCCATGGACACCACCACAA 298
consensus_2417#1      CAGCAATTTTCATGGTTACGGGTGTTCGTAAAAGTAATAACTGTATCTGTTCTGCTGTTG 74
                      * **   *  *  *** * * *  *  *      *   * *   **     *  *     

consensus_2417#0      GGA---GCATGGTGCCATCCAGGTGCATAGGAAGCTGGCCAGCGGCGGAGGCGGCGGCGG 355
consensus_2417#1      GCACGTGTGCAATGCAATGCAGGTGCATAGGAAGCTGGCCAGCGGCGGAGGCGGCGGCGG 134
                      * *   *     *** ** *****************************************

consensus_2417#0      CGGCGCGGTGGCCGGAGAGGTGTACGAAACGGAGCTCGTGGACGGCGGCGCCGGGTTCGC 415
consensus_2417#1      CGGCGCGGTGGCCGGAGAGGTGTACGAAACGGAGCTCGTGGACGGCGGCGCCGGGTTCGC 194
                      ************************************************************

consensus_2417#0      GGACGGCGAGGCGGCGAGGGCCTTCTTCGCGAGGCTGGACGAGCAGCTCAACAAGGTGAA 475
consensus_2417#1      GGACGGCGAGGCGGCGAGGGCCTTCTTCGCGAGGCTGGACGAGCAGCTCAACAAGGTGAA 254
                      ************************************************************

consensus_2417#0      CCGCTTCTACGAGCGGAAGGAGGCCGAGTTCGTGGAGCGCGGCGAGTCGCTCCGCCGCCA 535
consensus_2417#1      CCGCTTCTACGAGCGGAAGGAGGCCGAGTTCGTGGAGCGCGGCGAGTCGCTCCGCCGCCA 314
                      ************************************************************

consensus_2417#0      GCTGCAGATCCTCGCCGAGCTCCGGGCCGCCGTCGTCGCCGAGCAGCAGCGCGACGGGCG 595
consensus_2417#1      GCTGCAGATCCTCGCCGAGCTCCGGGCCGCCGTCGTCGCCGAGCAGCAGCGCGACGGGCG 374
                      ************************************************************

consensus_2417#0      CCGCCGCCGATGCGGCAACGGCGGCGACTCCTCGCCGCCGGACACGGAGGATCCCTCCGT 655
consensus_2417#1      CCGCCGCCGATGCGGCAACGGCGGCGACTCCTCGCCGCCGGACACGGAGGATCCCTCCGT 434
                      ************************************************************

consensus_2417#0      CTCCTGCTCCATCCTCCACGGAGATCAGTCCCTCAGAGGCACTTCTGAG-CAAGAACAGG 714
consensus_2417#1      CTCCTGCTCCATCCTCCACGG----TACGTGCGTACATACTCTCCAGTCTCCATCTCTCT 490
                      *********************     *    *  * *  * ** * *   * *   *   

consensus_2417#0      AAGGCCAGGAAAAGCTCAC-CAAAGACATGATTGCAAGGAGCCCTGACGAAGGAGACGAT 773
consensus_2417#1      TCTGCTAACACCTGCACGTACAAAGACATGATTGCAAGGAGCCCTGACGAAGGAGACGAT 550
                         ** *  *   ** *   ****************************************

consensus_2417#0      GATCAGCTCACCATCCCTCAAGAATTGGGCGATTCAGGGAGGCTTGGCAGGCCAAGAGAA 833
consensus_2417#1      GATCAGCTCACCATCCCTCAAGAATTGGGCGATTCAGGGAGGCTTGGCAGGCCAAGAGAA 610
                      ************************************************************

consensus_2417#0      GAAGCCGCCAACACCAGGCCGAGGACGACGCTCCCAGGAGGCAGGGCGGTCACCTGCCAA 893
consensus_2417#1      GAAGCCGCCAACACCAGGCCGAGGACGACGCTCCCAGGAGGCAGGGCGGTCACCTGCCAA 670
                      ************************************************************

consensus_2417#0      GGCAGAAGCGTCAGGATCAACATCCCGGTGACCACGCCGACGAGGACCGTCACCGCCATC 953
consensus_2417#1      GGCAGAAGCGTCAGGATCAACATCCCGGTGACCACGCCGACGAGGACCGTCACCGCCATC 730
                      ************************************************************

consensus_2417#0      CGTGAGCTTCTGTTCGACGACATGCTAAGCCAGTCGAGGAGGAGCGGTAGCGCCAACGGT 1013
consensus_2417#1      CGTGAGCTTCTGTTCGACGACATGCTAAGCCAGTCGAGGAGGAGCGGTAGCGCCAACGGT 790
                      ************************************************************

consensus_2417#0      ACAAAATGCGGCGACAAGC--TGAGCATCAACAAGAGGAAGGTGCATCAGGCAGAGAAGA 1071
consensus_2417#1      ACAAAATGCGGCGACAAGCGGTAAGTGTAACTGACATGTAAT------------------ 832
                      *******************  * **  * *   * * * *                    

consensus_2417#0      TGATAAGGGGTGCCCTGATTGAGCTGTACAAGGGATTGGGGTATCTCAAGACATACCGGA 1131
consensus_2417#1      ------------------------------------------------------------
                                                                                  

consensus_2417#0      GCTTAAACATGATGGCGTTTGTGAAGATTTTGAAGAAATTTGACAAGGTTACAGCAAAGG 1191
consensus_2417#1      ------------------------------------------------------------
                                                                                  

consensus_2417#0      AAGCTCAGTCAATATACCTTAAAGTAGTGGAGAGCTCCTACTTCAATGTCTCTGACAAGG 1251
consensus_2417#1      ------------------------------------------------------------
                                                                                  

consensus_2417#0      TAATTAGGCTAATGGACGATGTGGATGAGCTGTTTGTGAGGCATTTTGCAGAAGGTGACA 1311
consensus_2417#1      ------------------------------------------------------------
                                                                                  

consensus_2417#0      AACGGAAAGCAATGAAGTATCTTAAGCCAAATCAGAGGGAAGAATCACACACCACAACAT 1371
consensus_2417#1      ------------------------------------------------------------
                                                                                  

consensus_2417#0      TTTTCATAGGGCTATTCACTGGTGGCTTTGCAGCATTATTCATTGGTTATTGTATCATGG 1431
consensus_2417#1      ------------------------------------------------------------
                                                                                  

consensus_2417#0      CACACATTGCTGGGATGTACACCCAGCAGTCAAACAAGGTCTACATGGCAACATCATATC 1491
consensus_2417#1      ------------------------------------------------------------
                                                                                  

consensus_2417#0      CTGTCCTGAGCATGTTCAGCCTCTTCTTTCTGCATCTCTTCCTCTACGGATGCAACATCT 1551
consensus_2417#1      ------------------------------------------------------------
                                                                                  

consensus_2417#0      TCATGTGGAGAAAGACACGCATAAACTACACATTCATATTTGAATTCACGCCTACCAAAG 1611
consensus_2417#1      ------------------------------------------------------------
                                                                                  

consensus_2417#0      AGCTGAAGTATCGTGATGTGTTCCTGATTTGCACTACTTCCATGACAATTGTCATTGGTG 1671
consensus_2417#1      ------------------------------------------------------------
                                                                                  

consensus_2417#0      TTATGTTTGCACACCTGACACTCATTGTCAAAGGGTATTCGTCATGTGCAGTCCAAGCAA 1731
consensus_2417#1      ------------------------------------------------------------
                                                                                  

consensus_2417#0      TACCAGGAGCTCTACTTCTGGTTTTCTTGCTAATATTGGTCTGCCCTTTCAACATACTCT 1791
consensus_2417#1      ------------------------------------------------------------
                                                                                  

consensus_2417#0      ACCGATCATGTCGTTACCACTTCCTAACAGTGATCAGAAACATCATTCTAACCCCTTTCT 1851
consensus_2417#1      ------------------------------------------------------------
                                                                                  

consensus_2417#0      ACAAGGTTGTCATGGTTGATTTCTTCATGGCTGATCAGCTTTGCAGCCAGGTACCACTGC 1911
consensus_2417#1      ------------------------------------------------------------
                                                                                  

consensus_2417#0      TTAGGAGCCTAGAGTATCTGGCGTGCTATTACATAACCAGCAGGCTACAAGACACAAGAC 1971
consensus_2417#1      ------------------------------------------------------------
                                                                                  

consensus_2417#0      TATGGCTACTGCACCAGAGTGAAGCACTTTAGAGATTTGGCTTATGCAGTATCCTTCCTA 2031
consensus_2417#1      ------------------------------------------------------------
                                                                                  

consensus_2417#0      CCTTACTACTGGAGGGCCATGCAGTGCGCAAGGAGATGGTTTGACGAGGGGGACATAAAT 2091
consensus_2417#1      ------------------------------------------------------------
                                                                                  

consensus_2417#0      CACATTGTCAACCTTGGGAAGTATGTGTCAGCAATGCTTGCTGCTGGAACAAAAGTGGCA 2151
consensus_2417#1      ------------------------------------------------------------
                                                                                  

consensus_2417#0      TACGAGAATGATAACAGTGCTGGATGGCTGTCACTTGTTGTCATTGTGTCGAGTCTCGCC 2211
consensus_2417#1      ------------------------------------------------------------
                                                                                  

consensus_2417#0      ACTATCTACCAACTATACTGGGACTTTGTCAAGGATTGGGGTCTTCTGCAGTTTAACTCC 2271
consensus_2417#1      ------------------------------------------------------------
                                                                                  

consensus_2417#0      AAGAACCCTTGGCTCCGTAATGATCTGATACTCAAACAAAAGTACATCTATTTCCTTTCC 2331
consensus_2417#1      ------------------------------------------------------------
                                                                                  

consensus_2417#0      ATGGGTCTGAACATTATCTTGAGGCTGGCATGGCTTCAGACCGTCATCCACCCTAACATC 2391
consensus_2417#1      ------------------------------------------------------------
                                                                                  

consensus_2417#0      GGAAGCCTGGATTCCAGAGTAACTTTGTTCATCTTGGCAGCTCTTGAGGTGATTCGACGA 2451
consensus_2417#1      ------------------------------------------------------------
                                                                                  

consensus_2417#0      GGCCACTGGAACTTCTACAGGTTGGAAAACGAGCACCTAAACAATGCAGGGAAATTCAGA 2511
consensus_2417#1      ------------------------------------------------------------
                                                                                  

consensus_2417#0      GCTGTGAAGGTTGTTCCACTTCCTTTTCATGAAGTGGAAGAGGACTAACAAAATAGGGCA 2571
consensus_2417#1      ------------------------------------------------------------
                                                                                  

consensus_2417#0      TCATCATCATCATTGCAGCAGATTCTAGGGATTCAGAACTCTAAGCAGTTCAGATGTAAC 2631
consensus_2417#1      ------------------------------------------------------------
                                                                                  

consensus_2417#0      ACCAACTAATGTTAGAAAGCCTGCACTACCCTATTATGATTCAATTAAATTTTTTGGTGT 2691
consensus_2417#1      ------------------------------------------------------------
                                                                                  

consensus_2417#0      GAGGAATAATGGGCATTTAACATGTTCAGTTTGGAGAAGATACAAGCAAAAGGCAAACAC 2751
consensus_2417#1      ------------------------------------------------------------
                                                                                  

consensus_2417#0      TATATAGATGTAGAATACAGGGGTTCCAATTAGTTTACCAAGATCGAATACTAATCTCGT 2811
consensus_2417#1      ------------------------------------------------------------
                                                                                  

consensus_2417#0      GGAGTTGAAGCGAATTCACTTGTGGAAAAATCCAATCAATCACAATTGTTCT 2863
consensus_2417#1      ----------------------------------------------------