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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2420#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 686 fasta sequence
[TTTTTTTTTTTCCAAGGCATGCACTTTTTTCTTTTCACAAATATATCTAAAATTGCATGGTTGTTATCGCAAAGATACCTCTGGAAAATGCATACAAATATGGACGGCGCTGTGGTTTGGCTGTCGTGCGTCGAGATGCAAAATGAGGCTTGGGCCGATCTAACAAACCAACGAGTCCTGTTTTGCTTCGATTGGGATAATCGGAAGACTAAATTGCCCCTTCACCTTAACGAAGTACATGACTAAAATAGCCATAGCTTTAGATGATCTGCTTCCTACTACACTACTACCATAACCAATAGGGGTACAGTAAAATATCCCCTTTAGATACCCTGCAACTATAACATACCTTCAACCAGGCCCATGTAACTTCTTGTCCTTCTAAGCTAATTATATCACCCAGGACAAAAAAAATACATCTTGATTCTCATCGGCCAGCAGGAATTCTTTGTAGTCTGTATTTGAAGACCATAGAACCTTTTAGACCTTCTCTCCAGAAATCCACCACACGATACAACCCATCATAAGTAAATGCTGAAATTTGTTTAGCCCTTGAATAACTGTCATCCTTGCCATTGTGGCCTTTGAATCCATGAATCACTCGGACAGGTGTCCTTGTCTTGATGCAATTCTTCAAGGCAAGATTTCCCTCTCTAGCTGTTGATCCTCACCCTTTTTTTACCACA]
[+] EMBL CA762369 [TTTTTTTTTTTCCAAGGCATGCACTTTTTTCTTTTCACAAATATATCTAAAATTGCATGGTTGTTATCGCAAAGATACCTCTGGAAAATGCATACAAATATGGACGGCGCTGTGGTTTGGCTGTCGTGCGTCGAGATGCAAAATGAGGCTTGGGCCGATCTAACAAACCAACGAGTCCTGTTTTGCTTCGATTGGGATAATCGGAAGACTAAATTGCCCCTTCACCTTAACGAAGTACATGACTAAAATAGCCATAGCTTTAGATGATCTGCTTCCTACTACACTACTACCATAACCAATAGGGGTACAGTAAAATATCCCCTTTAGATACCCTGCAACTATAACATACCTTCAACCAGGCCCATGTAACTTCTTGTCCTTCTAAGCTAATTATATCACCCAGGACAAAAAAAATACATCTTGATTCTCATCGGCCAGCAGGAATTCTTTGTAGTCTGTATTTGAAGACCATAGAACCTTTTAGACCTTCTCTCCAGAAATCCACCACACGATACAACCCATCATAAGTAAATGCTGAAATTTGTTTAGCCCTTGAATAACTGTCATCCTTGCCATTGTGGCCTTTGAATCCATGAATCACTCGGACAGGTGTCCTTGTCTTGATGCAATTCTTCAAGGCAAGATTTCCCTCTCTAGCTGTTGATCCTCACCCTTTTTTTACCACA]
consensusID : consensus_2420#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 623 fasta sequence
[TTTTTTTGCACAAGGCAAGAAACGGTTATATTCCAATGCATGCACTTTTTTCTTTTCACAAATATATCTAAGATTGCATGGTTGTTATCGCAAAGATACCTCTGGAAAATGCATACAAATATGGACGGCGCTGTGGTTTGGCTGTCGTGCGTCGAGATGCAAAATGAGGCTTGGGCCGATCTAACAAACCAACGAGTCCTGTTTTGCTTCGATTGGGATAATCGGAAGACTAAATTGCCCCTTCACCTTAACGAAGTACATGACTAAAATAGCCATAGCTTTAGATGATCTGCTTCCTACTACACTACTACCATAACCAATAGGGGTACAGTAAAATATCCCCTTTAGATACCCTGCAACTATAACATACCTTCAACCAGGCCCATGTAACTTCTTGTCCTTCTAAGCTAATTATATCACCCAGGACAAAAAAAATACATCTTGATTCTCATCGACCAGCATGAATTCTTTGTAGTCTGTATTTGAAGACCATAGAACCTTTTAGACCTTCTCTCCAGAAATCCACCACACGATACAACCCATCATAAGTAAATGCTGAGATTTGTTTAGCCCTTGAATAACTGTCATCCTTGCCATTTTGGCCTTTGAATCCCCCCTTGTCT]
[+] EMBL CA763107 [TTTTTTTGCACAAGGCAAGAAACGGTTATATTCCAATGCATGCACTTTTTTCTTTTCACAAATATATCTAAGATTGCATGGTTGTTATCGCAAAGATACCTCTGGAAAATGCATACAAATATGGACGGCGCTGTGGTTTGGCTGTCGTGCGTCGAGATGCAAAATGAGGCTTGGGCCGATCTAACAAACCAACGAGTCCTGTTTTGCTTCGATTGGGATAATCGGAAGACTAAATTGCCCCTTCACCTTAACGAAGTACATGACTAAAATAGCCATAGCTTTAGATGATCTGCTTCCTACTACACTACTACCATAACCAATAGGGGTACAGTAAAATATCCCCTTTAGATACCCTGCAACTATAACATACCTTCAACCAGGCCCATGTAACTTCTTGTCCTTCTAAGCTAATTATATCACCCAGGACAAAAAAAATACATCTTGATTCTCATCGACCAGCATGAATTCTTTGTAGTCTGTATTTGAAGACCATAGAACCTTTTAGACCTTCTCTCCAGAAATCCACCACACGATACAACCCATCATAAGTAAATGCTGAGATTTGTTTAGCCCTTGAATAACTGTCATCCTTGCCATTTTGGCCTTTGAATCCCCCCTTGTCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2420#0 ---------------------TTTTTTTTTTTCCAAGGCATGCACTTTTTTCTTTTCACA 39
consensus_2420#1 TTTTTTTGCACAAGGCAAGAAACGGTTATATTCCAATGCATGCACTTTTTTCTTTTCACA 60
** * ****** ***********************
consensus_2420#0 AATATATCTAAAATTGCATGGTTGTTATCGCAAAGATACCTCTGGAAAATGCATACAAAT 99
consensus_2420#1 AATATATCTAAGATTGCATGGTTGTTATCGCAAAGATACCTCTGGAAAATGCATACAAAT 120
*********** ************************************************
consensus_2420#0 ATGGACGGCGCTGTGGTTTGGCTGTCGTGCGTCGAGATGCAAAATGAGGCTTGGGCCGAT 159
consensus_2420#1 ATGGACGGCGCTGTGGTTTGGCTGTCGTGCGTCGAGATGCAAAATGAGGCTTGGGCCGAT 180
************************************************************
consensus_2420#0 CTAACAAACCAACGAGTCCTGTTTTGCTTCGATTGGGATAATCGGAAGACTAAATTGCCC 219
consensus_2420#1 CTAACAAACCAACGAGTCCTGTTTTGCTTCGATTGGGATAATCGGAAGACTAAATTGCCC 240
************************************************************
consensus_2420#0 CTTCACCTTAACGAAGTACATGACTAAAATAGCCATAGCTTTAGATGATCTGCTTCCTAC 279
consensus_2420#1 CTTCACCTTAACGAAGTACATGACTAAAATAGCCATAGCTTTAGATGATCTGCTTCCTAC 300
************************************************************
consensus_2420#0 TACACTACTACCATAACCAATAGGGGTACAGTAAAATATCCCCTTTAGATACCCTGCAAC 339
consensus_2420#1 TACACTACTACCATAACCAATAGGGGTACAGTAAAATATCCCCTTTAGATACCCTGCAAC 360
************************************************************
consensus_2420#0 TATAACATACCTTCAACCAGGCCCATGTAACTTCTTGTCCTTCTAAGCTAATTATATCAC 399
consensus_2420#1 TATAACATACCTTCAACCAGGCCCATGTAACTTCTTGTCCTTCTAAGCTAATTATATCAC 420
************************************************************
consensus_2420#0 CCAGGACAAAAAAAATACATCTTGATTCTCATCGGCCAGCAGGAATTCTTTGTAGTCTGT 459
consensus_2420#1 CCAGGACAAAAAAAATACATCTTGATTCTCATCGACCAGCATGAATTCTTTGTAGTCTGT 480
********************************** ****** ******************
consensus_2420#0 ATTTGAAGACCATAGAACCTTTTAGACCTTCTCTCCAGAAATCCACCACACGATACAACC 519
consensus_2420#1 ATTTGAAGACCATAGAACCTTTTAGACCTTCTCTCCAGAAATCCACCACACGATACAACC 540
************************************************************
consensus_2420#0 CATCATAAGTAAATGCTGAAATTTGTTTAGCCCTTGAATAACTGTCATCCTTGCCATTGT 579
consensus_2420#1 CATCATAAGTAAATGCTGAGATTTGTTTAGCCCTTGAATAACTGTCATCCTTGCCATTTT 600
******************* ************************************** *
consensus_2420#0 GGCCTTTGAATCCATGAATCACTCGGACAGGTGTCCTTGTCTTGATGCAATTCTTCAAGG 639
consensus_2420#1 GGCCTTTGAATCCCCCCTTGTCT------------------------------------- 623
************* * **
consensus_2420#0 CAAGATTTCCCTCTCTAGCTGTTGATCCTCACCCTTTTTTTACCACA 686
consensus_2420#1 -----------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||