cluster # 2421

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 2421 cluster # 2421 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2421#0 length = 784 sequences # 1

consensus_2421#1 length = 690 sequences # 1

consensusID : consensus_2421#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 784
fasta sequence

                              [GGACGAGACAAAGGGATACATATCTATGCAAAGTCTCTGACCATGGGATACAAAGGATGGACCATAAAAACATTTCTTCTACTTCATTTGCTAATATTCAGTGTAGATCCCACAAAAGAAGAGGTTGACAACAATTTAATCATCAAGACGATTCAGACCGCAGATGGGCAAACCTTTGCCTGTGTTAGTTTCAAATCGCAACCATCCTTGAGGCATCCTTTGCTGATGAATCATACCACTCAGTTGATGCCACCAATTTCCTTTCCTCACTGTACCGATGATGATGAAGGATCTAAATTTGGCATCTCTAATGTTGAGATGAGCGAAATTGAGTGTCCCCCAGGGACGGTGCCAATCCTAACAAGCTACAATGGATCCATGAGTACAAGATCATTCGATAAGATTATATACAGTGAGAACAGAAATGACAAAGGAAATAGACAAATGGCTGCAGTTGTTACAGTGCCATCTACTTTTCACGGACTACAAACATCAATTTCAATATGGGAACCAGATCTTGGTACAGGACGTCCACCAAGGTTTAGTGGGGCAATTGTTGTTCTAAAAAATGGAGGAAGTCGTGTAGCTGTAGGATGGTCTGTTGATCCACATCTGTACGGAGACAATCTTGTTCATTTCGAGATCGCGTGGGTTGATAATGATAAGTCATGTATCAACCTTCGTTGTGCGGGGTTTGTTCAGATGAGCAAAAAGGCAATCCCTGGAATAATAATCAGACCAGTTTCCACTGTCAATGGGAAACAATACATCATTAGAGNTAAGA]

[+] EMBL CA767452             [GGACGAGACAAAGGGATACATATCTATGCAAAGTCTCTGACCATGGGATACAAAGGATGGACCATAAAAACATTTCTTCTACTTCATTTGCTAATATTCAGTGTAGATCCCACAAAAGAAGAGGTTGACAACAATTTAATCATCAAGACGATTCAGACCGCAGATGGGCAAACCTTTGCCTGTGTTAGTTTCAAATCGCAACCATCCTTGAGGCATCCTTTGCTGATGAATCATACCACTCAGTTGATGCCACCAATTTCCTTTCCTCACTGTACCGATGATGATGAAGGATCTAAATTTGGCATCTCTAATGTTGAGATGAGCGAAATTGAGTGTCCCCCAGGGACGGTGCCAATCCTAACAAGCTACAATGGATCCATGAGTACAAGATCATTCGATAAGATTATATACAGTGAGAACAGAAATGACAAAGGAAATAGACAAATGGCTGCAGTTGTTACAGTGCCATCTACTTTTCACGGACTACAAACATCAATTTCAATATGGGAACCAGATCTTGGTACAGGACGTCCACCAAGGTTTAGTGGGGCAATTGTTGTTCTAAAAAATGGAGGAAGTCGTGTAGCTGTAGGATGGTCTGTTGATCCACATCTGTACGGAGACAATCTTGTTCATTTCGAGATCGCGTGGGTTGATAATGATAAGTCATGTATCAACCTTCGTTGTGCGGGGTTTGTTCAGATGAGCAAAAAGGCAATCCCTGGAATAATAATCAGACCAGTTTCCACTGTCAATGGGAAACAATACATCATTAGAGNTAAGA]




>consensus_2421#0
GGACGAGACAAAGGGATACATATCTATGCAAAGTCTCTGACCATGGGATACAAAGGATGG
ACCATAAAAACATTTCTTCTACTTCATTTGCTAATATTCAGTGTAGATCCCACAAAAGAA
GAGGTTGACAACAATTTAATCATCAAGACGATTCAGACCGCAGATGGGCAAACCTTTGCC
TGTGTTAGTTTCAAATCGCAACCATCCTTGAGGCATCCTTTGCTGATGAATCATACCACT
CAGTTGATGCCACCAATTTCCTTTCCTCACTGTACCGATGATGATGAAGGATCTAAATTT
GGCATCTCTAATGTTGAGATGAGCGAAATTGAGTGTCCCCCAGGGACGGTGCCAATCCTA
ACAAGCTACAATGGATCCATGAGTACAAGATCATTCGATAAGATTATATACAGTGAGAAC
AGAAATGACAAAGGAAATAGACAAATGGCTGCAGTTGTTACAGTGCCATCTACTTTTCAC
GGACTACAAACATCAATTTCAATATGGGAACCAGATCTTGGTACAGGACGTCCACCAAGG
TTTAGTGGGGCAATTGTTGTTCTAAAAAATGGAGGAAGTCGTGTAGCTGTAGGATGGTCT
GTTGATCCACATCTGTACGGAGACAATCTTGTTCATTTCGAGATCGCGTGGGTTGATAAT
GATAAGTCATGTATCAACCTTCGTTGTGCGGGGTTTGTTCAGATGAGCAAAAAGGCAATC
CCTGGAATAATAATCAGACCAGTTTCCACTGTCAATGGGAAACAATACATCATTAGAGNT
AAGA

consensusID : consensus_2421#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 690
fasta sequence

                              [TTTTTTTTTTGATGGTTAATTGCCAATGCAATCAAGATCATTAGTGCATTGCATTCAAATTACAAACTTGAAGTCGTTCCAAAATCCATGTAGTCTTATTGAAACATATGACTTACTTCAGCTCCTGGGTCTTAAAACATGCTAAGATTATTCGATGTTTACAGTAGCAGTATAGTCGCTGAAGCAAATACAGATCAAATGCTTCGAACAATCACTTGATGGGCTGACTCGGTAAGCATCCCGCTCCACCATAGTAAAACTGCAAGCCATCGTCCGTGGTGTAAGGACGCCCAACCTCGTAGCAGTTTGGCTCAGTTGCAACCGTGTTGATTGTTTTGAGAGCAGGAGTTGCAAAGCTTCCCGACGCGTCGATCACCTTCGCATCGGCAAAAAAAGCGGCCTTTGTCCCTCCTTCATCAGCAGGCTGGCCACTGCCCATGGGAGGAAAAGGTTCCCCTGGAGCAGCTTCTACTACACCCATCCGACTGATCACGTCTGCAGCTTCAGACATGTGAGTCAAGAGCTTTGATGGCCAGTACCCCACTATTTCTTCTCCAACTTTCAGCACCCAGTCTCCCATGAACTTAAGAATCTTAACTCTGATGATGTATTGGTTTCCATTGACAGTGGAACCTGGTCTGATTATTATTCCGGGGATTGCCTTTTTGCTAATCTGACCAACCCCGCAAA]

[+] EMBL CA762378             [TTTTTTTTTTGATGGTTAATTGCCAATGCAATCAAGATCATTAGTGCATTGCATTCAAATTACAAACTTGAAGTCGTTCCAAAATCCATGTAGTCTTATTGAAACATATGACTTACTTCAGCTCCTGGGTCTTAAAACATGCTAAGATTATTCGATGTTTACAGTAGCAGTATAGTCGCTGAAGCAAATACAGATCAAATGCTTCGAACAATCACTTGATGGGCTGACTCGGTAAGCATCCCGCTCCACCATAGTAAAACTGCAAGCCATCGTCCGTGGTGTAAGGACGCCCAACCTCGTAGCAGTTTGGCTCAGTTGCAACCGTGTTGATTGTTTTGAGAGCAGGAGTTGCAAAGCTTCCCGACGCGTCGATCACCTTCGCATCGGCAAAAAAAGCGGCCTTTGTCCCTCCTTCATCAGCAGGCTGGCCACTGCCCATGGGAGGAAAAGGTTCCCCTGGAGCAGCTTCTACTACACCCATCCGACTGATCACGTCTGCAGCTTCAGACATGTGAGTCAAGAGCTTTGATGGCCAGTACCCCACTATTTCTTCTCCAACTTTCAGCACCCAGTCTCCCATGAACTTAAGAATCTTAACTCTGATGATGTATTGGTTTCCATTGACAGTGGAACCTGGTCTGATTATTATTCCGGGGATTGCCTTTTTGCTAATCTGACCAACCCCGCAAA]




>consensus_2421#1
TTTTTTTTTTGATGGTTAATTGCCAATGCAATCAAGATCATTAGTGCATTGCATTCAAAT
TACAAACTTGAAGTCGTTCCAAAATCCATGTAGTCTTATTGAAACATATGACTTACTTCA
GCTCCTGGGTCTTAAAACATGCTAAGATTATTCGATGTTTACAGTAGCAGTATAGTCGCT
GAAGCAAATACAGATCAAATGCTTCGAACAATCACTTGATGGGCTGACTCGGTAAGCATC
CCGCTCCACCATAGTAAAACTGCAAGCCATCGTCCGTGGTGTAAGGACGCCCAACCTCGT
AGCAGTTTGGCTCAGTTGCAACCGTGTTGATTGTTTTGAGAGCAGGAGTTGCAAAGCTTC
CCGACGCGTCGATCACCTTCGCATCGGCAAAAAAAGCGGCCTTTGTCCCTCCTTCATCAG
CAGGCTGGCCACTGCCCATGGGAGGAAAAGGTTCCCCTGGAGCAGCTTCTACTACACCCA
TCCGACTGATCACGTCTGCAGCTTCAGACATGTGAGTCAAGAGCTTTGATGGCCAGTACC
CCACTATTTCTTCTCCAACTTTCAGCACCCAGTCTCCCATGAACTTAAGAATCTTAACTC
TGATGATGTATTGGTTTCCATTGACAGTGGAACCTGGTCTGATTATTATTCCGGGGATTG
CCTTTTTGCTAATCTGACCAACCCCGCAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2421#0      GGACGAGACAAAGGGATACATATCTATGCAAAGTCTCTGACCATGGGATACAAAGGATGG 60
consensus_2421#1      ------------------TTTTTTTTTTGATGGTTAATTGCCA----ATGCAATCAA--G 36
                                          * * * *  *  **   *  ***    ** ***   *  *

consensus_2421#0      ACCATAAAAACATTTCTTCTACTTCATTTGCTAATATTCAGTGTAGATCCCACAAAAGAA 120
consensus_2421#1      ATCATTAGTGCATTGCATTCAAATTACAAACTTGAAGTCGTTCCAAAATCCATGTAGTCT 96
                      * *** *   **** * *  *  * *    **   * **  *  * *  ***   *    

consensus_2421#0      GAGGTTGACAACAATTTAATCATCAAGACGATTCAGACCGCAGATGGGCAAACCTTTGCC 180
consensus_2421#1      TA--TTGA-AACATATGACTTACTTCAGCTCCTGGGTCTTAAAACATGCTAAGATTATTC 153
                       *  **** ****  * * * *      *   *  * *   * *   ** **  **   *

consensus_2421#0      TGTGTTAGTTTCAAATCGCAACCATCCTTGAGGCATCCTTTGCT--GATGAATCATACCA 238
consensus_2421#1      GATGTT--TACAGTAGCAGTATAGTCGCTGAAGCAAATACAGATCAAATGCTTCGAACAA 211
                        ****  *     * *   *   **  *** ***      * *   ***  **  ** *

consensus_2421#0      CTCAGTTGATGCCACCAATTTCCTTTCCTCACTGTACCGATGATGATGAAGGATCTAAAT 298
consensus_2421#1      -TCACTTGATGG-GCTGACTCGGTAAGCATCCCGCTCC-ACCATAGTAAA--ACTGCAAG 266
                       *** ******   *  * *   *   *   * *  ** *  **  * **  *    ** 

consensus_2421#0      TTGGCATCTCTAATGTTGAGATGAGCGAAATTGAGTGTCCCCCAGGGACGGTGCCAATCC 358
consensus_2421#1      CCATCGTCCGTGGTGTAAGGACGCCCAACCTCG--TAGCAGTTTGGCTCAGTTGCAACCG 324
                          * **  *  ***   ** *  * *  * *  *  *     **  * **  *** * 

consensus_2421#0      TAACAAGCTACAATGGATCCATGAGT-ACAAGATCATTCGATAAGATTATATACAGTGAG 417
consensus_2421#1      TGTTGA-TTGTTTTGAGAGCAGGAGTTGCAAAGCTTCCCGACGCGT-------CGATCAC 376
                      *    *  *    **    ** ****  ***       ***   *        *  * * 

consensus_2421#0      AACAGAAATGACAAAGGAAATAGACAAATGGCTGCAGTTGTTACAGTGCCATCTACTTTT 477
consensus_2421#1      CTTCGCATCGGCAAAAAAAGCGGCCTTTGTCCCTCCTTCATCAGCAGGCTGGCCACTGCC 436
                          * *  * ****  **   * *      *  *  *  * *    **   * ***   

consensus_2421#0      CACGGACTACAAACATCAATTTCAATATGGGAACCAGATCTTGGTACAGGACGTCCACCA 537
consensus_2421#1      CATGGGAGGAAAAGGTTCCCCT--------GGAGCAGCTTCTACTACA-----CCCATCC 483
                      ** **     ***  *     *        * * *** *  *  ****      *** * 

consensus_2421#0      AGGTTTAGTGGGGCAATTGTTGTTCTAAAAAATGGAGGAAGTCGTGTAGCTGTAGGATGG 597
consensus_2421#1      GA--CTGATCACGT--CTGCAGCTTCAGACATGTGAGTCAAGAGCTTTGATGGCCAGTAC 539
                           *  *   *    **  * *  * * *   ***  *   *  * * **     *  

consensus_2421#0      TCTGTTGATCCACATCTGTACGGAGACAATCTTGTTCATTTCGAGATCGCGTGGGTTGAT 657
consensus_2421#1      CCCACTATTTCTTCTCCA-ACTTTCAGCACCCAGTCTCCCATGAACTTAAGAATCTTAAC 598
                       *   *  * *   **   **    *  * *  **       **  *   *    ** * 

consensus_2421#0      AATGATAAGTCATGTATCAACCTTCGTTGT--GCGGGGTTTGTTCAGATGAGCAAAAAGG 715
consensus_2421#1      TCTGATGA----TGTATTGGTTTCCATTGACAGTGGAACCTGGTCTGATTATTATTCCGG 654
                        **** *    *****     * * ***   * **    ** ** *** *  *    **

consensus_2421#0      CAATCCCTGGAATAATAATCAGACCAGTTTCCACTGTCAATGGGAAACAATACATCATTA 775
consensus_2421#1      GGATTGCCTTTTTGCTAATCTGACCAACC-CCGCAAA----------------------- 690
                        **  *     *  ***** *****    ** *                          

consensus_2421#0      GAGNTAAGA 784
consensus_2421#1      ---------