cluster # 2424

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Oryza sativa
cluster # 2424 cluster # 2424 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2424#0 length = 607 sequences # 1

consensus_2424#1 length = 567 sequences # 1

consensusID : consensus_2424#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 607
fasta sequence

                              [TCTTTCCCTAGGACCTACCCCTCCCCTACCCTCTTGAGCTTTCTCAAATAAAAAAAAAGGAACACCTGAATTTTTTTGGTGATTCAAAGAGAAAAAGACAAAGATTTGATGGCATCTTCGAGCTCTACCATGATGGCAAGGCCCGGCGCTGTGAAGAATATTGAAAGCTGGGACGAGTTTACAAAGCATTTTGTGAAATCAGAGGACAAGCTGGTGGTGCTGGTATTCATGGCGCCGTGGTCGGAGCCGTGGAAGCTGATGAGGCCGGCGGTGGAGAAGATGGCGTCGGGGCTGAAGAGCGAGGAGGCCGAGGTGTGCACGATCAGCGTCGACCGGTTCAACACGCTGGGGCGGCTGCTGCGGGTGGAGGCGCTGCCGACGTTCGTGCTGGTGAAGAGCCCGGGCGGTGGCTCGCGTCGTCGGCGTCAACCGGGACGATCTTCACAGCAGCATCAACAAGCACCTCGCACCACCCTCTTCTTCTCCACAACCCATTAATATTTCTTAGTGCTGTTGATGATTCTTGGTTGATTGCATGATATAATCGAGTAATGCCATGCGTCTTAATTATGAGTTGTAATTGTTTATCACATACTGTATTTGAGAC]

[+] EMBL CF310697             [TCTTTCCCTAGGACCTACCCCTCCCCTACCCTCTTGAGCTTTCTCAAATAAAAAAAAAGGAACACCTGAATTTTTTTGGTGATTCAAAGAGAAAAAGACAAAGATTTGATGGCATCTTCGAGCTCTACCATGATGGCAAGGCCCGGCGCTGTGAAGAATATTGAAAGCTGGGACGAGTTTACAAAGCATTTTGTGAAATCAGAGGACAAGCTGGTGGTGCTGGTATTCATGGCGCCGTGGTCGGAGCCGTGGAAGCTGATGAGGCCGGCGGTGGAGAAGATGGCGTCGGGGCTGAAGAGCGAGGAGGCCGAGGTGTGCACGATCAGCGTCGACCGGTTCAACACGCTGGGGCGGCTGCTGCGGGTGGAGGCGCTGCCGACGTTCGTGCTGGTGAAGAGCCCGGGCGGTGGCTCGCGTCGTCGGCGTCAACCGGGACGATCTTCACAGCAGCATCAACAAGCACCTCGCACCACCCTCTTCTTCTCCACAACCCATTAATATTTCTTAGTGCTGTTGATGATTCTTGGTTGATTGCATGATATAATCGAGTAATGCCATGCGTCTTAATTATGAGTTGTAATTGTTTATCACATACTGTATTTGAGAC]




>consensus_2424#0
TCTTTCCCTAGGACCTACCCCTCCCCTACCCTCTTGAGCTTTCTCAAATAAAAAAAAAGG
AACACCTGAATTTTTTTGGTGATTCAAAGAGAAAAAGACAAAGATTTGATGGCATCTTCG
AGCTCTACCATGATGGCAAGGCCCGGCGCTGTGAAGAATATTGAAAGCTGGGACGAGTTT
ACAAAGCATTTTGTGAAATCAGAGGACAAGCTGGTGGTGCTGGTATTCATGGCGCCGTGG
TCGGAGCCGTGGAAGCTGATGAGGCCGGCGGTGGAGAAGATGGCGTCGGGGCTGAAGAGC
GAGGAGGCCGAGGTGTGCACGATCAGCGTCGACCGGTTCAACACGCTGGGGCGGCTGCTG
CGGGTGGAGGCGCTGCCGACGTTCGTGCTGGTGAAGAGCCCGGGCGGTGGCTCGCGTCGT
CGGCGTCAACCGGGACGATCTTCACAGCAGCATCAACAAGCACCTCGCACCACCCTCTTC
TTCTCCACAACCCATTAATATTTCTTAGTGCTGTTGATGATTCTTGGTTGATTGCATGAT
ATAATCGAGTAATGCCATGCGTCTTAATTATGAGTTGTAATTGTTTATCACATACTGTAT
TTGAGAC

consensusID : consensus_2424#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 567
fasta sequence

                              [GAGGACAAGCTGGTAAACATATATACATATATAATCCAATCCAATTCAGATTTACATGTGATGTGATCGATCGACGCATTCATGCATGCATGAAATTAATATATTGAAATATGAATGATCAATCAGGTGGTGCTGGTATTCATGGCGCCGTGGTCGGAGCCGTGGAAGCTGATGAGGCCGGCGGTGGAGAAGATGGCGTCGGGGCTGAAGAGCGAGGAGGCCGAGGTGTGCACGATCAGCGTCGACCGGTTCAACACGCTGGGGCGGCTGCTGCGGGTGGAGGCGCTGCCGACGTTCGTGCTGGTGAAGAGGCACCGGGCGGTGGCTCGCGTCGTCGGCGTCAACCGGGACGATCTTCACAGCAGCATCAACAAGCACCTCGCACCACCCTCTTCTTCTCCACAACCCATTAATATTTCTTAGTGCTGTTGATGATTCTTGGTTGATTGCATGATATAATCGAGTAATGCCATGCGTCTTAATTATGAGTTGTAATTGTTTATCACATACTGTATTTGAGACATATTCAACCTTGTTTCGAGAAAAAAAAATGGAGATGAAAAAAAA]

[+] EMBL AK109214             [GAGGACAAGCTGGTAAACATATATACATATATAATCCAATCCAATTCAGATTTACATGTGATGTGATCGATCGACGCATTCATGCATGCATGAAATTAATATATTGAAATATGAATGATCAATCAGGTGGTGCTGGTATTCATGGCGCCGTGGTCGGAGCCGTGGAAGCTGATGAGGCCGGCGGTGGAGAAGATGGCGTCGGGGCTGAAGAGCGAGGAGGCCGAGGTGTGCACGATCAGCGTCGACCGGTTCAACACGCTGGGGCGGCTGCTGCGGGTGGAGGCGCTGCCGACGTTCGTGCTGGTGAAGAGGCACCGGGCGGTGGCTCGCGTCGTCGGCGTCAACCGGGACGATCTTCACAGCAGCATCAACAAGCACCTCGCACCACCCTCTTCTTCTCCACAACCCATTAATATTTCTTAGTGCTGTTGATGATTCTTGGTTGATTGCATGATATAATCGAGTAATGCCATGCGTCTTAATTATGAGTTGTAATTGTTTATCACATACTGTATTTGAGACATATTCAACCTTGTTTCGAGAAAAAAAAATGGAGATGAAAAAAAA]




>consensus_2424#1
GAGGACAAGCTGGTAAACATATATACATATATAATCCAATCCAATTCAGATTTACATGTG
ATGTGATCGATCGACGCATTCATGCATGCATGAAATTAATATATTGAAATATGAATGATC
AATCAGGTGGTGCTGGTATTCATGGCGCCGTGGTCGGAGCCGTGGAAGCTGATGAGGCCG
GCGGTGGAGAAGATGGCGTCGGGGCTGAAGAGCGAGGAGGCCGAGGTGTGCACGATCAGC
GTCGACCGGTTCAACACGCTGGGGCGGCTGCTGCGGGTGGAGGCGCTGCCGACGTTCGTG
CTGGTGAAGAGGCACCGGGCGGTGGCTCGCGTCGTCGGCGTCAACCGGGACGATCTTCAC
AGCAGCATCAACAAGCACCTCGCACCACCCTCTTCTTCTCCACAACCCATTAATATTTCT
TAGTGCTGTTGATGATTCTTGGTTGATTGCATGATATAATCGAGTAATGCCATGCGTCTT
AATTATGAGTTGTAATTGTTTATCACATACTGTATTTGAGACATATTCAACCTTGTTTCG
AGAAAAAAAAATGGAGATGAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2424#0      TCTTTCCCTAGGACCTACCCCTCCCCTACCCTCTTGAGCTTTCTCAAATAAAAAAAAAGG 60
consensus_2424#1      ------------------------------------------------------------
                                                                                  

consensus_2424#0      AACACCTGAATTTTTTTGGTGATTCAAAGAGAAAAAGACAAAGATTTGATGGCATCTTCG 120
consensus_2424#1      -------------------------GAGGACAAGCTGGTAAACATATATACATATAT--- 32
                                                * ** **   *  *** ** *      ** *   

consensus_2424#0      AGCTCTACCATGATGGCAAGGCCCGGCGCTGTGAAGAAT-ATTGAAAGCTGGGACGAGTT 179
consensus_2424#1      AATCCAATCCAATTCAGATTTACATGTGATGTGATCGATCGACGCATTCATGCATGCATG 92
                      *   * * *    *   *    *  * * *****   **    * *  *  * * *  * 

consensus_2424#0      TACAAAGCATTTTGTGAAATCAGAGGACAAGCTGGTGGTGCTGGTATTCATGGCGCCGTG 239
consensus_2424#1      AAATTAATATATTGAAATATGAATGATCAATCAGGTGGTGCTGGTATTCATGGCGCCGTG 152
                       *   *  ** ***  * ** *  *  *** * ***************************

consensus_2424#0      GTCGGAGCCGTGGAAGCTGATGAGGCCGGCGGTGGAGAAGATGGCGTCGGGGCTGAAGAG 299
consensus_2424#1      GTCGGAGCCGTGGAAGCTGATGAGGCCGGCGGTGGAGAAGATGGCGTCGGGGCTGAAGAG 212
                      ************************************************************

consensus_2424#0      CGAGGAGGCCGAGGTGTGCACGATCAGCGTCGACCGGTTCAACACGCTGGGGCGGCTGCT 359
consensus_2424#1      CGAGGAGGCCGAGGTGTGCACGATCAGCGTCGACCGGTTCAACACGCTGGGGCGGCTGCT 272
                      ************************************************************

consensus_2424#0      GCGGGTGGAGGCGCTGCCGACGTTCGTGCTGGTGAAGAGCC--CGGGCGGTGGCTCGCGT 417
consensus_2424#1      GCGGGTGGAGGCGCTGCCGACGTTCGTGCTGGTGAAGAGGCACCGGGCGGTGGCTCGCGT 332
                      *************************************** *  *****************

consensus_2424#0      CGTCGGCGTCAACCGGGACGATCTTCACAGCAGCATCAACAAGCACCTCGCACCACCCTC 477
consensus_2424#1      CGTCGGCGTCAACCGGGACGATCTTCACAGCAGCATCAACAAGCACCTCGCACCACCCTC 392
                      ************************************************************

consensus_2424#0      TTCTTCTCCACAACCCATTAATATTTCTTAGTGCTGTTGATGATTCTTGGTTGATTGCAT 537
consensus_2424#1      TTCTTCTCCACAACCCATTAATATTTCTTAGTGCTGTTGATGATTCTTGGTTGATTGCAT 452
                      ************************************************************

consensus_2424#0      GATATAATCGAGTAATGCCATGCGTCTTAATTATGAGTTGTAATTGTTTATCACATACTG 597
consensus_2424#1      GATATAATCGAGTAATGCCATGCGTCTTAATTATGAGTTGTAATTGTTTATCACATACTG 512
                      ************************************************************

consensus_2424#0      TATTTGAGAC--------------------------------------------- 607
consensus_2424#1      TATTTGAGACATATTCAACCTTGTTTCGAGAAAAAAAAATGGAGATGAAAAAAAA 567
                      **********