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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2428#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2230 fasta sequence
[TTCTTTCCCCCCGTCTCTCATGCGCCATTGATCGGATCGCTTGATGCCGCATGCCGCCACCGACGATGATGCTGCCGCCGTCGCCGGGCGACTCCGACCCGTCGGGGTCTCGCGACATGGACGACGAGGACCTCGTCGAGGATCTCCTCGTCACCGTCAACTCGGCGCGGGCCTTCGTCGAGTTCCGCCGCACGCAGCGCAAGGAGTGCGCCAACCTCCTCCGCTGGCTGGAGCTCGTCCTCCCGCTCCTCGAGGAGCTCCGCGACTCGGCGCCGCCGCTCACCGAGGACGCCTACCACCGCCTCGCCCTGCTCGGACGCGCCTTCTCCGCCGCGCGCCGCCTCCTCCGGTCGTGCCACGACGGCAGCAAGATCTACCTGGCGCTGGAGAGCGAGGCGGTGCAGGGGAGATTCCGCGCCGTGTACGAGAAGATGAACTCCGCTCTCGACGGGATGCCCTACTCGGAGCTCGCCATCTCCGATGAAGTCAAGGAGCAGGTGGAGCTGATGAACGCTCAGCTGACGCGATGTAAGAAGCGGGCGGACACGCAGGACATCGAGCTGTCCATGGATCTGATGGTGATCCTCGACAACAAGGAGGGGGAGAGGAACGCGGACAGGGCGATCCTGGAGAGGCTGGCCAAGAAGCTGGAGCTGCAAACGCTGGCGGACCTGAGGGCGGAGACGATGGCCATCAAGAAGCTCATCAGCGAGAGGAACGGGCAGAGCGGCGATAGCACCAAGCAGATCATCGAGCTCCTCAACAAGTTCAAGTAGGTCGCCGGCGTCGACGAGAAGAACGTCCTCGGCGAGGTCTCCGTGACGAAATCCCTCGACAAGTGCCCCTCGTTGATGATCCCCAACGACTTCCTCTGCCCGATCACGCTCGCCATCATGAGGGATCCTGTCATCGTTGCCACTGGACAGACGTACGAGAGGAGGAGCATCCAGAAATGGCTGGACAGCGGGGAGAGGACGTGCCCGAAGACGCGGCAGCGGCTGTCGCACATGTCGCTGGCGCCCAACTACGCGCTCAAGAACCTGATCCTGGAATGGTGCGACAAGAACAAGGTGGAGCTGCAGAAGAGGGAGCCGGAGCCCGTGGCGGAGCAGGACGACGAGCATCAGCGCGGCGCCGAGGACATCCCGTCGCTGGTGGAAGGCATGTCGTCGATCCACCTCGACGTGCAGCGGAAGGCTGTGAAGAGGATCCGGATGCTGTCCAAGGAGTGCCCGGAGAACAGGACGCTCATCGCCGACAGCGGCGGCATCCCGGCGCTCATCGGGCTCCTCGCCTGCCCGGACAAGAAGGTGCAGGAGAACACGGTCACGTCGCTGCTGAACCTGTCCATCGACGAGAGCAACAAGCGCCACATCACCAAGGGGGGAGCACTCCCGCTCATCATCGAGATCCTCCGCAACGGCAGCGCGGAGGCGCAGGAGAACTCCGCCGCGACGCTGTTCAGCCTGTCCATGATCGACGAGAACAAGCTCACCATCGGGAGGCTGGGCGGCATCGCGCCGCTCGTCGAGCTCCTCCAGAACGGCAGCATCAGGGGGAAGAAGGACGCCGCCACGGCCATCTTCAACCTGGTGCTCAACCAGCAGAACAAGGTGAGGGCCACCCAGGCCGGCATCGTGCCGGCGCTTCTCAAGATCATCGACGACAAGGCGCTCAACATGGTGGACGAGGCGCTGTCCATCTTCCTCCTGCTCTCCTCCAACGCCGCCTGCTGCGGCGAGATCGGGACGACGCCGTTCATCGAGAAGCTCGTGCGTCTCATCAAGGACGGCACGCCCAAGAACAAGGAGTGCGCGCTGTCCGTGCTGCTGGAGCTGGGGTCCAAGAACAAGCCGCTGCTGGTGCACGCGCTCAGGTTCGGACTCCATGAGGATCTCTCCAAGATCGCCAAGAACGGCACCAGTAGAGCGCAGAGGAAGGCGACCTCTCTCATTCAGCTGGCGCGCAAGTGCTACTGAAGATGAGGACCCCGTTTGTAATTGTAACTCATTTTCTTTCCCCCTCTTTCTCAGTAGAAAAAATTCTGTTGCTTGCCCTGTTCTAGCTGAATGCATATGTGGTGTATCGCCAGAATGGGGAATTGGTGGTGGAATTGCTGAAAAAAAACACCCTAAATGTATTTGTGCCGATTTCAGTCAAACTAGTTGATATTCCTATACCATTATAAGCTGAGTTAGATTTTAATGCTAGGATATACGATATTAGTTTA]
[+] EMBL AK072890 [TTCTTTCCCCCCGTCTCTCATGCGCCATTGATCGGATCGCTTGATGCCGCATGCCGCCACCGACGATGATGCTGCCGCCGTCGCCGGGCGACTCCGACCCGTCGGGGTCTCGCGACATGGACGACGAGGACCTCGTCGAGGATCTCCTCGTCACCGTCAACTCGGCGCGGGCCTTCGTCGAGTTCCGCCGCACGCAGCGCAAGGAGTGCGCCAACCTCCTCCGCTGGCTGGAGCTCGTCCTCCCGCTCCTCGAGGAGCTCCGCGACTCGGCGCCGCCGCTCACCGAGGACGCCTACCACCGCCTCGCCCTGCTCGGACGCGCCTTCTCCGCCGCGCGCCGCCTCCTCCGGTCGTGCCACGACGGCAGCAAGATCTACCTGGCGCTGGAGAGCGAGGCGGTGCAGGGGAGATTCCGCGCCGTGTACGAGAAGATGAACTCCGCTCTCGACGGGATGCCCTACTCGGAGCTCGCCATCTCCGATGAAGTCAAGGAGCAGGTGGAGCTGATGAACGCTCAGCTGACGCGATGTAAGAAGCGGGCGGACACGCAGGACATCGAGCTGTCCATGGATCTGATGGTGATCCTCGACAACAAGGAGGGGGAGAGGAACGCGGACAGGGCGATCCTGGAGAGGCTGGCCAAGAAGCTGGAGCTGCAAACGCTGGCGGACCTGAGGGCGGAGACGATGGCCATCAAGAAGCTCATCAGCGAGAGGAACGGGCAGAGCGGCGATAGCACCAAGCAGATCATCGAGCTCCTCAACAAGTTCAAGTAGGTCGCCGGCGTCGACGAGAAGAACGTCCTCGGCGAGGTCTCCGTGACGAAATCCCTCGACAAGTGCCCCTCGTTGATGATCCCCAACGACTTCCTCTGCCCGATCACGCTCGCCATCATGAGGGATCCTGTCATCGTTGCCACTGGACAGACGTACGAGAGGAGGAGCATCCAGAAATGGCTGGACAGCGGGGAGAGGACGTGCCCGAAGACGCGGCAGCGGCTGTCGCACATGTCGCTGGCGCCCAACTACGCGCTCAAGAACCTGATCCTGGAATGGTGCGACAAGAACAAGGTGGAGCTGCAGAAGAGGGAGCCGGAGCCCGTGGCGGAGCAGGACGACGAGCATCAGCGCGGCGCCGAGGACATCCCGTCGCTGGTGGAAGGCATGTCGTCGATCCACCTCGACGTGCAGCGGAAGGCTGTGAAGAGGATCCGGATGCTGTCCAAGGAGTGCCCGGAGAACAGGACGCTCATCGCCGACAGCGGCGGCATCCCGGCGCTCATCGGGCTCCTCGCCTGCCCGGACAAGAAGGTGCAGGAGAACACGGTCACGTCGCTGCTGAACCTGTCCATCGACGAGAGCAACAAGCGCCACATCACCAAGGGGGGAGCACTCCCGCTCATCATCGAGATCCTCCGCAACGGCAGCGCGGAGGCGCAGGAGAACTCCGCCGCGACGCTGTTCAGCCTGTCCATGATCGACGAGAACAAGCTCACCATCGGGAGGCTGGGCGGCATCGCGCCGCTCGTCGAGCTCCTCCAGAACGGCAGCATCAGGGGGAAGAAGGACGCCGCCACGGCCATCTTCAACCTGGTGCTCAACCAGCAGAACAAGGTGAGGGCCACCCAGGCCGGCATCGTGCCGGCGCTTCTCAAGATCATCGACGACAAGGCGCTCAACATGGTGGACGAGGCGCTGTCCATCTTCCTCCTGCTCTCCTCCAACGCCGCCTGCTGCGGCGAGATCGGGACGACGCCGTTCATCGAGAAGCTCGTGCGTCTCATCAAGGACGGCACGCCCAAGAACAAGGAGTGCGCGCTGTCCGTGCTGCTGGAGCTGGGGTCCAAGAACAAGCCGCTGCTGGTGCACGCGCTCAGGTTCGGACTCCATGAGGATCTCTCCAAGATCGCCAAGAACGGCACCAGTAGAGCGCAGAGGAAGGCGACCTCTCTCATTCAGCTGGCGCGCAAGTGCTACTGAAGATGAGGACCCCGTTTGTAATTGTAACTCATTTTCTTTCCCCCTCTTTCTCAGTAGAAAAAATTCTGTTGCTTGCCCTGTTCTAGCTGAATGCATATGTGGTGTATCGCCAGAATGGGGAATTGGTGGTGGAATTGCTGAAAAAAAACACCCTAAATGTATTTGTGCCGATTTCAGTCAAACTAGTTGATATTCCTATACCATTATAAGCTGAGTTAGATTTTAATGCTAGGATATACGATATTAGTTTA]
consensusID : consensus_2428#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 536 fasta sequence
[CGAGACAAGGGGCTCAACATGGTGGACGAGGCGCTGTCCATCTTCCTCCTGCTCTCCTCCAACGCCGCCTGNTGCGGCGAGATCGGGACGACGCCGTTCATCGAGAAGCTCGTGCGTCTCATCAAGGACGGCACGCCCAAGAACAAGGAGTGCGCGCTGTCCGTGCTGCTGGAGCTGGGGTCCAAGAACAAGCCGCTGCTGGTGCACGCGCTCAGGTTCGGACTCCATGAGGATCTCTCCAAGATCGCCAAGAACGGCACCAGTAGAGCGCAGAGGAAGGCGACCTCTCTCATTCAGCTGGCGCGCAAGTGCTACTGAAGATGAGGACCCCGTTTGTAATTGTAACTCATTTTCTTTCCCCCTCTTTCTCAGTAGAAAAAATTCTGTTGCTTGCCCTGTTCTAGCTGAATGCATATGTGGTGTATCGCCAGAATGGGGAATTGGTGGTGGAATTGCTGAAAAAAAACACNCCTAAATGTATTTGTGCCGATTTCAGTCAAACTAGTTGATATTCCTATACCAAAAAAAAAAAAAAA]
[-] EMBL CA762420 [CGAGACAAGGGGCTCAACATGGTGGACGAGGCGCTGTCCATCTTCCTCCTGCTCTCCTCCAACGCCGCCTGNTGCGGCGAGATCGGGACGACGCCGTTCATCGAGAAGCTCGTGCGTCTCATCAAGGACGGCACGCCCAAGAACAAGGAGTGCGCGCTGTCCGTGCTGCTGGAGCTGGGGTCCAAGAACAAGCCGCTGCTGGTGCACGCGCTCAGGTTCGGACTCCATGAGGATCTCTCCAAGATCGCCAAGAACGGCACCAGTAGAGCGCAGAGGAAGGCGACCTCTCTCATTCAGCTGGCGCGCAAGTGCTACTGAAGATGAGGACCCCGTTTGTAATTGTAACTCATTTTCTTTCCCCCTCTTTCTCAGTAGAAAAAATTCTGTTGCTTGCCCTGTTCTAGCTGAATGCATATGTGGTGTATCGCCAGAATGGGGAATTGGTGGTGGAATTGCTGAAAAAAAACACNCCTAAATGTATTTGTGCCGATTTCAGTCAAACTAGTTGATATTCCTATACCAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2428#0 TTCTTTCCCCCCGTCTCTCATGCGCCATTGATCGGATCGCTTGATGCCGCATGCCGCCAC 60
consensus_2428#1 ------------------------------------------------------------
consensus_2428#0 CGACGATGATGCTGCCGCCGTCGCCGGGCGACTCCGACCCGTCGGGGTCTCGCGACATGG 120
consensus_2428#1 ------------------------------------------------------------
consensus_2428#0 ACGACGAGGACCTCGTCGAGGATCTCCTCGTCACCGTCAACTCGGCGCGGGCCTTCGTCG 180
consensus_2428#1 ------------------------------------------------------------
consensus_2428#0 AGTTCCGCCGCACGCAGCGCAAGGAGTGCGCCAACCTCCTCCGCTGGCTGGAGCTCGTCC 240
consensus_2428#1 ------------------------------------------------------------
consensus_2428#0 TCCCGCTCCTCGAGGAGCTCCGCGACTCGGCGCCGCCGCTCACCGAGGACGCCTACCACC 300
consensus_2428#1 ------------------------------------------------------------
consensus_2428#0 GCCTCGCCCTGCTCGGACGCGCCTTCTCCGCCGCGCGCCGCCTCCTCCGGTCGTGCCACG 360
consensus_2428#1 ------------------------------------------------------------
consensus_2428#0 ACGGCAGCAAGATCTACCTGGCGCTGGAGAGCGAGGCGGTGCAGGGGAGATTCCGCGCCG 420
consensus_2428#1 ------------------------------------------------------------
consensus_2428#0 TGTACGAGAAGATGAACTCCGCTCTCGACGGGATGCCCTACTCGGAGCTCGCCATCTCCG 480
consensus_2428#1 ------------------------------------------------------------
consensus_2428#0 ATGAAGTCAAGGAGCAGGTGGAGCTGATGAACGCTCAGCTGACGCGATGTAAGAAGCGGG 540
consensus_2428#1 ------------------------------------------------------------
consensus_2428#0 CGGACACGCAGGACATCGAGCTGTCCATGGATCTGATGGTGATCCTCGACAACAAGGAGG 600
consensus_2428#1 ------------------------------------------------------------
consensus_2428#0 GGGAGAGGAACGCGGACAGGGCGATCCTGGAGAGGCTGGCCAAGAAGCTGGAGCTGCAAA 660
consensus_2428#1 ------------------------------------------------------------
consensus_2428#0 CGCTGGCGGACCTGAGGGCGGAGACGATGGCCATCAAGAAGCTCATCAGCGAGAGGAACG 720
consensus_2428#1 ------------------------------------------------------------
consensus_2428#0 GGCAGAGCGGCGATAGCACCAAGCAGATCATCGAGCTCCTCAACAAGTTCAAGTAGGTCG 780
consensus_2428#1 ------------------------------------------------------------
consensus_2428#0 CCGGCGTCGACGAGAAGAACGTCCTCGGCGAGGTCTCCGTGACGAAATCCCTCGACAAGT 840
consensus_2428#1 ------------------------------------------------------------
consensus_2428#0 GCCCCTCGTTGATGATCCCCAACGACTTCCTCTGCCCGATCACGCTCGCCATCATGAGGG 900
consensus_2428#1 ------------------------------------------------------------
consensus_2428#0 ATCCTGTCATCGTTGCCACTGGACAGACGTACGAGAGGAGGAGCATCCAGAAATGGCTGG 960
consensus_2428#1 ------------------------------------------------------------
consensus_2428#0 ACAGCGGGGAGAGGACGTGCCCGAAGACGCGGCAGCGGCTGTCGCACATGTCGCTGGCGC 1020
consensus_2428#1 ------------------------------------------------------------
consensus_2428#0 CCAACTACGCGCTCAAGAACCTGATCCTGGAATGGTGCGACAAGAACAAGGTGGAGCTGC 1080
consensus_2428#1 ------------------------------------------------------------
consensus_2428#0 AGAAGAGGGAGCCGGAGCCCGTGGCGGAGCAGGACGACGAGCATCAGCGCGGCGCCGAGG 1140
consensus_2428#1 ------------------------------------------------------------
consensus_2428#0 ACATCCCGTCGCTGGTGGAAGGCATGTCGTCGATCCACCTCGACGTGCAGCGGAAGGCTG 1200
consensus_2428#1 ------------------------------------------------------------
consensus_2428#0 TGAAGAGGATCCGGATGCTGTCCAAGGAGTGCCCGGAGAACAGGACGCTCATCGCCGACA 1260
consensus_2428#1 ------------------------------------------------------------
consensus_2428#0 GCGGCGGCATCCCGGCGCTCATCGGGCTCCTCGCCTGCCCGGACAAGAAGGTGCAGGAGA 1320
consensus_2428#1 ------------------------------------------------------------
consensus_2428#0 ACACGGTCACGTCGCTGCTGAACCTGTCCATCGACGAGAGCAACAAGCGCCACATCACCA 1380
consensus_2428#1 ------------------------------------------------------------
consensus_2428#0 AGGGGGGAGCACTCCCGCTCATCATCGAGATCCTCCGCAACGGCAGCGCGGAGGCGCAGG 1440
consensus_2428#1 ------------------------------------------------------------
consensus_2428#0 AGAACTCCGCCGCGACGCTGTTCAGCCTGTCCATGATCGACGAGAACAAGCTCACCATCG 1500
consensus_2428#1 ------------------------------------------------------------
consensus_2428#0 GGAGGCTGGGCGGCATCGCGCCGCTCGTCGAGCTCCTCCAGAACGGCAGCATCAGGGGGA 1560
consensus_2428#1 ------------------------------------------------------------
consensus_2428#0 AGAAGGACGCCGCCACGGCCATCTTCAACCTGGTGCTCAACCAGCAGAACAAGGTGAGGG 1620
consensus_2428#1 ------------------------------------------------------------
consensus_2428#0 CCACCCAGGCCGGCATCGTGCCGGCGCTTCTCAAGATCATCGACGACAAGGCGCTCAACA 1680
consensus_2428#1 ----------------------------------------CGA-GACAAGGGGCTCAACA 19
*** ******* ********
consensus_2428#0 TGGTGGACGAGGCGCTGTCCATCTTCCTCCTGCTCTCCTCCAACGCCGCCTGCTGCGGCG 1740
consensus_2428#1 TGGTGGACGAGGCGCTGTCCATCTTCCTCCTGCTCTCCTCCAACGCCGCCTGNTGCGGCG 79
**************************************************** *******
consensus_2428#0 AGATCGGGACGACGCCGTTCATCGAGAAGCTCGTGCGTCTCATCAAGGACGGCACGCCCA 1800
consensus_2428#1 AGATCGGGACGACGCCGTTCATCGAGAAGCTCGTGCGTCTCATCAAGGACGGCACGCCCA 139
************************************************************
consensus_2428#0 AGAACAAGGAGTGCGCGCTGTCCGTGCTGCTGGAGCTGGGGTCCAAGAACAAGCCGCTGC 1860
consensus_2428#1 AGAACAAGGAGTGCGCGCTGTCCGTGCTGCTGGAGCTGGGGTCCAAGAACAAGCCGCTGC 199
************************************************************
consensus_2428#0 TGGTGCACGCGCTCAGGTTCGGACTCCATGAGGATCTCTCCAAGATCGCCAAGAACGGCA 1920
consensus_2428#1 TGGTGCACGCGCTCAGGTTCGGACTCCATGAGGATCTCTCCAAGATCGCCAAGAACGGCA 259
************************************************************
consensus_2428#0 CCAGTAGAGCGCAGAGGAAGGCGACCTCTCTCATTCAGCTGGCGCGCAAGTGCTACTGAA 1980
consensus_2428#1 CCAGTAGAGCGCAGAGGAAGGCGACCTCTCTCATTCAGCTGGCGCGCAAGTGCTACTGAA 319
************************************************************
consensus_2428#0 GATGAGGACCCCGTTTGTAATTGTAACTCATTTTCTTTCCCCCTCTTTCTCAGTAGAAAA 2040
consensus_2428#1 GATGAGGACCCCGTTTGTAATTGTAACTCATTTTCTTTCCCCCTCTTTCTCAGTAGAAAA 379
************************************************************
consensus_2428#0 AATTCTGTTGCTTGCCCTGTTCTAGCTGAATGCATATGTGGTGTATCGCCAGAATGGGGA 2100
consensus_2428#1 AATTCTGTTGCTTGCCCTGTTCTAGCTGAATGCATATGTGGTGTATCGCCAGAATGGGGA 439
************************************************************
consensus_2428#0 ATTGGTGGTGGAATTGCTGAAAAAAAACACCC-TAAATGTATTTGTGCCGATTTCAGTCA 2159
consensus_2428#1 ATTGGTGGTGGAATTGCTGAAAAAAAACACNCCTAAATGTATTTGTGCCGATTTCAGTCA 499
****************************** * ***************************
consensus_2428#0 AACTAGTTGATATTCCTATACCATTATAAGCTGAGTTAGATTTTAATGCTAGGATATACG 2219
consensus_2428#1 AACTAGTTGATATTCCTATACCAAAAAAAAAAAAAAA----------------------- 536
*********************** * ** *
consensus_2428#0 ATATTAGTTTA 2230
consensus_2428#1 -----------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||