These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2430#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1180 fasta sequence [AATCTCTCTCTACTCTATCTCTTCCTCAATCCCCATCCCCCTCTCACTCTCTCTCCTCCCTCGCTTGCTGCAGCGAGCGGCTGCACCCAGCGGGCAAGGCACGACGGCAGCGTGCCCTCTCTCTCCTCCCTCCACTTACTGCAGTGAGCGGCGGCGGCCGGTCGGCATGGCGTGAGAGCGGCGCGCCCTCTCTCTCCTCCCTCCCCATCCTGCAGTGAGCAGCGGTGGCTGCCCAGCAAGGTGCGCACAGTGGCACAGCCTCTCTCCTTCCTCCCCTAGCTGCAGCGAGCAGTGGAGGCGGAGGTCGGAGATTGGTGGCGAGCGGCGTCGAGCACAGCTGGGTGGCTCCGGCCGGTGGCGAGCGTGGCAATGGGGAGGGCGAACCAGAGGAAACCGGCGAGGAGCCTCAACGCCGCCATTGCCTCGGCCTCCGCCTCCGCTTCGGCCGCAGCTGTGGCAACCGACATCCCGCCTCCACTTTCTACACCACCGCACGTCGCTCGGCTCCGCGTGTCGACCGCCGTCGCCGCTCGACCTGTGCCGGCCCCCGCGCGTCATCATGCACGCCGACCGCCGGCGCCGCTCGACCTGGACCCGCGCTTGCCCCACGTGAGAGAGAGAGAGAGAGAGAGAGAGGGAAGAGGGGGATAGGAGAAAGAGGAGGCTCGTAGCCGCTGGCGCGCCACTCGTCCTCGACGGCGCCACCCTTGCCTCCACGGTCGCCGATCTTTGCAGTCAGCCTCTGCCGGCTCAGGGTGATAATTCGTACTTTTCCAACTAGATACGATCCATCGGATTAAAGGAAAAAAAAGGGTACTAATACCTCTTTTGAAATGGACATTCACAGTGATATAATATATGTATATATATAAAACATTCCTCATAAATAAGTTACGTACTTGATGTATTGGTATATCCTGTAGGTGATCTCATAATCAACTGCGACAAAGGGAATAGGCAAAGTGAGGAGGGTGTCCCCCAGTAGTGTGTCGGTGTTGTACTTGTTAAACAGATAGATAGTTCGGATAGGAACATATCTGTTGATAAGATAAGATAGAGTTTAGTTTGTTTCTTGTTTTTCTGTTGTGAAGATGTAATCTGTAAACTCCTATGTACACGCCACGCCAGGGGCTGTTTCTGGCTATATAACACGGACCGTGGAACCGAGAGAGGCAATCCA] [+] EMBL AK067465 [AATCTCTCTCTACTCTATCTCTTCCTCAATCCCCATCCCCCTCTCACTCTCTCTCCTCCCTCGCTTGCTGCAGCGAGCGGCTGCACCCAGCGGGCAAGGCACGACGGCAGCGTGCCCTCTCTCTCCTCCCTCCACTTACTGCAGTGAGCGGCGGCGGCCGGTCGGCATGGCGTGAGAGCGGCGCGCCCTCTCTCTCCTCCCTCCCCATCCTGCAGTGAGCAGCGGTGGCTGCCCAGCAAGGTGCGCACAGTGGCACAGCCTCTCTCCTTCCTCCCCTAGCTGCAGCGAGCAGTGGAGGCGGAGGTCGGAGATTGGTGGCGAGCGGCGTCGAGCACAGCTGGGTGGCTCCGGCCGGTGGCGAGCGTGGCAATGGGGAGGGCGAACCAGAGGAAACCGGCGAGGAGCCTCAACGCCGCCATTGCCTCGGCCTCCGCCTCCGCTTCGGCCGCAGCTGTGGCAACCGACATCCCGCCTCCACTTTCTACACCACCGCACGTCGCTCGGCTCCGCGTGTCGACCGCCGTCGCCGCTCGACCTGTGCCGGCCCCCGCGCGTCATCATGCACGCCGACCGCCGGCGCCGCTCGACCTGGACCCGCGCTTGCCCCACGTGAGAGAGAGAGAGAGAGAGAGAGAGGGAAGAGGGGGATAGGAGAAAGAGGAGGCTCGTAGCCGCTGGCGCGCCACTCGTCCTCGACGGCGCCACCCTTGCCTCCACGGTCGCCGATCTTTGCAGTCAGCCTCTGCCGGCTCAGGGTGATAATTCGTACTTTTCCAACTAGATACGATCCATCGGATTAAAGGAAAAAAAAGGGTACTAATACCTCTTTTGAAATGGACATTCACAGTGATATAATATATGTATATATATAAAACATTCCTCATAAATAAGTTACGTACTTGATGTATTGGTATATCCTGTAGGTGATCTCATAATCAACTGCGACAAAGGGAATAGGCAAAGTGAGGAGGGTGTCCCCCAGTAGTGTGTCGGTGTTGTACTTGTTAAACAGATAGATAGTTCGGATAGGAACATATCTGTTGATAAGATAAGATAGAGTTTAGTTTGTTTCTTGTTTTTCTGTTGTGAAGATGTAATCTGTAAACTCCTATGTACACGCCACGCCAGGGGCTGTTTCTGGCTATATAACACGGACCGTGGAACCGAGAGAGGCAATCCA] consensusID : consensus_2430#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1020 fasta sequence [CCCTCGCTTGCTGCAGCGAGCGGCTGCACCCAGCGGGCAAGGCACGACGGCAGCGTGCCCTCTCTCTCCTCCCTCCACTTACTGCAGTGAGCGGCGGCGGCCGGTCGGCATGGCGTGAGAGCGGCGCGCCCTCTCTCTCCTCCCTCCCCATCCTGCAGTGAGCAGCGGTGGCTGCCCAGCAAGGTGCGCACAGTGGCACAGCCTCTCTCTTTTCCCTCCCATTGCTGCAGCGAGCGCCGGCGGCCGGCCGGCAAGGCGTGCACGGCGGCACACCCTCTCTCTCCTTCCTCCCCTAGCTGCAGCGAGCAGTGGAGGCGGAGGTCGGAGATTGGTGGCGAGCGGCGTCGAGCACAGCTGGGTGGCTCCGGCCGGTGGCGAGCGTGGCAATGGGGAGGGCGAACCAGAGGAAACCGGCGAGGAGCCTCAACGCCGCCATTGCCTCGGCCTCCGCCTCCGCTTCGGCCGCAGCTGTGGCAACCGACATCCCGCCTCCACTTTCTACACCACCGCACGTCGCTCGGCTCCGCGTGTCGACCGCCGTCGCCGCTCGACCTGTGCCGGCCCCCGCGCGTCATCATGCACGCCGACCGCCGGCGCCGCTCGACCTGGACCCGCGCTTGCCCCCACGTGAGAGAGAGAGAGAGAGAGAGGGAAGAGGGGGATAGGAGAAAGAGGAGGCTCGTAGCCGCTGGCGCGCCACTCGTCCTCGACGGCGCCACCCTTGCCTCCACGGTCGCCGATCTTTGCAGTCAGCCTCTGCCGGCTCAGGGTGATCTCATAATCAACTGCGACAAAGGGAATAGGCAAAGTGAGGAGGGTGTCCCCCAGTAGTGTGTCGGTGTTGTACTTGTTAAACAGATAGATAGTTCGGATAGGAACATATCTGTTGATAAGATAAGATAGAGTTTAGTTTGTTTCTTGTTTTTCTGTTGTGAAGATGTAATCTGTAAACTCCTATGTACACGCCACGCCAGGGGCTGTTTCTGGCTATATAACACGGACCGTGGAACCGAGAGAGGC] [+] EMBL AK106103 [CCCTCGCTTGCTGCAGCGAGCGGCTGCACCCAGCGGGCAAGGCACGACGGCAGCGTGCCCTCTCTCTCCTCCCTCCACTTACTGCAGTGAGCGGCGGCGGCCGGTCGGCATGGCGTGAGAGCGGCGCGCCCTCTCTCTCCTCCCTCCCCATCCTGCAGTGAGCAGCGGTGGCTGCCCAGCAAGGTGCGCACAGTGGCACAGCCTCTCTCTTTTCCCTCCCATTGCTGCAGCGAGCGCCGGCGGCCGGCCGGCAAGGCGTGCACGGCGGCACACCCTCTCTCTCCTTCCTCCCCTAGCTGCAGCGAGCAGTGGAGGCGGAGGTCGGAGATTGGTGGCGAGCGGCGTCGAGCACAGCTGGGTGGCTCCGGCCGGTGGCGAGCGTGGCAATGGGGAGGGCGAACCAGAGGAAACCGGCGAGGAGCCTCAACGCCGCCATTGCCTCGGCCTCCGCCTCCGCTTCGGCCGCAGCTGTGGCAACCGACATCCCGCCTCCACTTTCTACACCACCGCACGTCGCTCGGCTCCGCGTGTCGACCGCCGTCGCCGCTCGACCTGTGCCGGCCCCCGCGCGTCATCATGCACGCCGACCGCCGGCGCCGCTCGACCTGGACCCGCGCTTGCCCCCACGTGAGAGAGAGAGAGAGAGAGAGGGAAGAGGGGGATAGGAGAAAGAGGAGGCTCGTAGCCGCTGGCGCGCCACTCGTCCTCGACGGCGCCACCCTTGCCTCCACGGTCGCCGATCTTTGCAGTCAGCCTCTGCCGGCTCAGGGTGATCTCATAATCAACTGCGACAAAGGGAATAGGCAAAGTGAGGAGGGTGTCCCCCAGTAGTGTGTCGGTGTTGTACTTGTTAAACAGATAGATAGTTCGGATAGGAACATATCTGTTGATAAGATAAGATAGAGTTTAGTTTGTTTCTTGTTTTTCTGTTGTGAAGATGTAATCTGTAAACTCCTATGTACACGCCACGCCAGGGGCTGTTTCTGGCTATATAACACGGACCGTGGAACCGAGAGAGGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2430#0 -----------AATCTCTCTCTACTCTATCTCTTCCTCAATCCCCATCCCC--CTCTCAC 47 consensus_2430#1 CCCTCGCTTGCTGCAGCGAGCGGCTGCACCCAGCGGGCAAGGCACGACGGCAGCGTGCCC 60 * * ** * * *** * * * * * * * consensus_2430#0 TCTCTCTCCTCCCTC-GCTTGCTGCAGCGAGCGGCTGCACCCAGCGGGCAAGGCACGACG 106 consensus_2430#1 TCTCTCTCCTCCCTCCACTTACTGCAGTGAGCGGCGGCGGCCGGTCGGCATGGCGTGAGA 120 *************** *** ****** ******* ** ** * **** *** ** consensus_2430#0 GCAGCGTGCCCTCTCTCTCCTCCCTCCACTTACTGCAGTGAGCGGCGGCGGCCGGTCGGC 166 consensus_2430#1 GCGGCGCGCCCTCTCTCTCCTCCCTCCCCATCCTGCAGTGAGCAGCGGTGGCTGCCCAGC 180 ** *** ******************** * * *********** **** *** * * ** consensus_2430#0 ATGGCGTG-AGAGCGGCGCGCCCTCTCTCTCCTCCCTCCCCATCCTGCAGTGAGCAGCGG 225 consensus_2430#1 AAGGTGCGCACAGTGGCACAGCCTCTCTCTTTTCCCTCCCATTGCTGCAGCGAGCGCCGG 240 * ** * * * ** *** * ********* ******** * ****** **** *** consensus_2430#0 TGGCTGCCCAGCAAGGTGCGCACAGTGGCACAGCCTCTCTC--CTTCCTCCCCTAGCTGC 283 consensus_2430#1 CGGCCGGCCGGCAAGGCGTGCACGGCGGCACACCCTCTCTCTCCTTCCTCCCCTAGCTGC 300 *** * ** ****** * **** * ****** ******** ***************** consensus_2430#0 AGCGAGCAGTGGAGGCGGAGGTCGGAGATTGGTGGCGAGCGGCGTCGAGCACAGCTGGGT 343 consensus_2430#1 AGCGAGCAGTGGAGGCGGAGGTCGGAGATTGGTGGCGAGCGGCGTCGAGCACAGCTGGGT 360 ************************************************************ consensus_2430#0 GGCTCCGGCCGGTGGCGAGCGTGGCAATGGGGAGGGCGAACCAGAGGAAACCGGCGAGGA 403 consensus_2430#1 GGCTCCGGCCGGTGGCGAGCGTGGCAATGGGGAGGGCGAACCAGAGGAAACCGGCGAGGA 420 ************************************************************ consensus_2430#0 GCCTCAACGCCGCCATTGCCTCGGCCTCCGCCTCCGCTTCGGCCGCAGCTGTGGCAACCG 463 consensus_2430#1 GCCTCAACGCCGCCATTGCCTCGGCCTCCGCCTCCGCTTCGGCCGCAGCTGTGGCAACCG 480 ************************************************************ consensus_2430#0 ACATCCCGCCTCCACTTTCTACACCACCGCACGTCGCTCGGCTCCGCGTGTCGACCGCCG 523 consensus_2430#1 ACATCCCGCCTCCACTTTCTACACCACCGCACGTCGCTCGGCTCCGCGTGTCGACCGCCG 540 ************************************************************ consensus_2430#0 TCGCCGCTCGACCTGTGCCGGCCCCCGCGCGTCATCATGCACGCCGACCGCCGGCGCCGC 583 consensus_2430#1 TCGCCGCTCGACCTGTGCCGGCCCCCGCGCGTCATCATGCACGCCGACCGCCGGCGCCGC 600 ************************************************************ consensus_2430#0 TCGACCTGGACCCGCGCTTGCCCCACGTGAGAGAGAGAGAGAGAGAGAGAGAGGGAAGAG 643 consensus_2430#1 TCGACCTGGACCCGCGCTTGCCCC---CACGTGAGAGAGAGAGAGAGAGAGAGGGAAGAG 657 ************************ * **************************** consensus_2430#0 GGGGATAGGAGAAAGAGGAGGCTCGTAGCCGCTGGCGCGCCACTCGTCCTCGACGGCGCC 703 consensus_2430#1 GGGGATAGGAGAAAGAGGAGGCTCGTAGCCGCTGGCGCGCCACTCGTCCTCGACGGCGCC 717 ************************************************************ consensus_2430#0 ACCCTTGCCTCCACGGTCGCCGATCTTTGCAGTCAGCCTCTGCCGGCTCAGGGTGATAAT 763 consensus_2430#1 ACCCTTGCCTCCACGGTCGCCGATCTTTGCAGTCAGCCTCTGCCGGCTCAGGGTGAT--- 774 ********************************************************* consensus_2430#0 TCGTACTTTTCCAACTAGATACGATCCATCGGATTAAAGGAAAAAAAAGGGTACTAATAC 823 consensus_2430#1 ------------------------------------------------------------ consensus_2430#0 CTCTTTTGAAATGGACATTCACAGTGATATAATATATGTATATATATAAAACATTCCTCA 883 consensus_2430#1 ------------------------------------------------------------ consensus_2430#0 TAAATAAGTTACGTACTTGATGTATTGGTATATCCTGTAGGTGATCTCATAATCAACTGC 943 consensus_2430#1 ---------------------------------------------CTCATAATCAACTGC 789 *************** consensus_2430#0 GACAAAGGGAATAGGCAAAGTGAGGAGGGTGTCCCCCAGTAGTGTGTCGGTGTTGTACTT 1003 consensus_2430#1 GACAAAGGGAATAGGCAAAGTGAGGAGGGTGTCCCCCAGTAGTGTGTCGGTGTTGTACTT 849 ************************************************************ consensus_2430#0 GTTAAACAGATAGATAGTTCGGATAGGAACATATCTGTTGATAAGATAAGATAGAGTTTA 1063 consensus_2430#1 GTTAAACAGATAGATAGTTCGGATAGGAACATATCTGTTGATAAGATAAGATAGAGTTTA 909 ************************************************************ consensus_2430#0 GTTTGTTTCTTGTTTTTCTGTTGTGAAGATGTAATCTGTAAACTCCTATGTACACGCCAC 1123 consensus_2430#1 GTTTGTTTCTTGTTTTTCTGTTGTGAAGATGTAATCTGTAAACTCCTATGTACACGCCAC 969 ************************************************************ consensus_2430#0 GCCAGGGGCTGTTTCTGGCTATATAACACGGACCGTGGAACCGAGAGAGGCAATCCA 1180 consensus_2430#1 GCCAGGGGCTGTTTCTGGCTATATAACACGGACCGTGGAACCGAGAGAGGC------ 1020 *************************************************** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||