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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2431#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1723 fasta sequence
[GCACATAACTGAACTGAGCAAAGCAACGCAGCAAGTCCATGAGGAGGCTGGCGGTGGCTGCGGCGGCGCTGCTCCTCGTCGCATGGCACTTCTCCCTGATAACAATGGCAGCGGCGCAGCTGTCACCGCCACAGCCACCGGACGACCAATACGACGACCCGCCCATGCCTGGGCTCCCGGTGTCACCACCGTCGCCGGGGTATTCCGATTCGCCGGAGCCGCCGCTGCCGGATTCCCCGCCATCACAGGAGCCTGACACGCCGGAGCCAGCACCACCAACGCCGCCCCAGCAGCAGCAGCAGCCGTGGCAGTCTCCATTGCCACCAAGGAGGGAGCCGGCGCCGCCGCGGACGGTGGTGCCGCCGCAGGAGCCGGGCTGGTCTTCAGTGCCGCCACCGCCGGCGAGGGTGATCAACTACACCACCACCGGGTGTACCACCATGCTGGTGTTCGGTGACTCGACGGTGGATCCCGGCAACAACAACCGGCTGCAGACGGCGATGAAGGCCAACTTCTTGCCGTACGGCGCCGACTTCCTCGGCGGCAGGCCCACCGGCCGGTTCAGCAACGGCCGGCTCATCACGGACATACTCGCGGAAAAACTAGGTATAGCGAGGAGTATTCCAGGATTCCGCGACCCAAGGTTGAGGTCAGGACAGCTCAGGAGGGGTGTGAGTTTTGCATCAGCAGGTTCCGGGTATGACGAGGCCACTGCCAGAAGTTCGAATGCACTGTCATTTCCCAACCAAATAGAGGACCTTTGGCGTTACAAAAGGAACCTGCAGAGGTTAGTTGGACGAAGAAGAGCAGAAGAACTAGTCAGGAGGGCTACATTCATCGTAAGTGCTGGAACAACAGATCTGCTTTTTCACTATCTTGCCTCAAACCAGTCAGCAGCAGAGAGCGGCCCACAGTACGAAAACCAGCTGATATCACGCGTTGCTAACTACACCCAGGTGATGGCAGCACTTGGAGGAAGGAGATTTGTCTTTGTTGGAGTGCCCCCAATTGGGTGTTTACCTATTGCTAGAACATTGCTAGGCACAGGTACAACCAGATGCCATGAAAACATGAACTTGCTGGCAACCTCATTTAATGAGAGGCTAGTTGAAGTGGTGCGTCTTCTAAAGAATCAACCAAATATCAGGGCTACATTTGTTGATACTTATACAACCATCGGCATGGCAACAATAAGCCCCAATAACTATGGCCTGACAGAAACCTCAAGAGGTTGTTGTGGAACAGGAGTTATTGAAGTTGGGCAAACATGCAGAGGCCGAAGAGCATGCACACATCCCAGCAAGTACATATACTGGGATGCTGCCCACCACACGGAGAGAATGAACCAAATTATCACAGAGGAAGTGATAATGAACTCAATTGGAGAAATTTATGCCTAGCTCACGATTGTGAATTCAGATTTGCAGCCCGACAAATCAATTTAGCATCCTAATTTACTGTGGTGCATACGAGCACATAGAACAATAGTTCAGTAGAAGAGATCGATTATATAATATTTTTCATACAAAATATGCTGTGTGCGAAAGAGAGTGTTACATCATAGACGCCCAAGACCTATGATGTCAACTGAAGTGGTTACCATTCATTCTACTTTCACTGTGATCTATAATTGTACACTTGACAACTCTTACAGGGTGTATGTTAGTTTGCAAAGTTGTCTAGCAGGTGATATCTTGATTACGCAAAATGAAATTGCTTCCAG]
[+] EMBL AK106946 [GCACATAACTGAACTGAGCAAAGCAACGCAGCAAGTCCATGAGGAGGCTGGCGGTGGCTGCGGCGGCGCTGCTCCTCGTCGCATGGCACTTCTCCCTGATAACAATGGCAGCGGCGCAGCTGTCACCGCCACAGCCACCGGACGACCAATACGACGACCCGCCCATGCCTGGGCTCCCGGTGTCACCACCGTCGCCGGGGTATTCCGATTCGCCGGAGCCGCCGCTGCCGGATTCCCCGCCATCACAGGAGCCTGACACGCCGGAGCCAGCACCACCAACGCCGCCCCAGCAGCAGCAGCAGCCGTGGCAGTCTCCATTGCCACCAAGGAGGGAGCCGGCGCCGCCGCGGACGGTGGTGCCGCCGCAGGAGCCGGGCTGGTCTTCAGTGCCGCCACCGCCGGCGAGGGTGATCAACTACACCACCACCGGGTGTACCACCATGCTGGTGTTCGGTGACTCGACGGTGGATCCCGGCAACAACAACCGGCTGCAGACGGCGATGAAGGCCAACTTCTTGCCGTACGGCGCCGACTTCCTCGGCGGCAGGCCCACCGGCCGGTTCAGCAACGGCCGGCTCATCACGGACATACTCGCGGAAAAACTAGGTATAGCGAGGAGTATTCCAGGATTCCGCGACCCAAGGTTGAGGTCAGGACAGCTCAGGAGGGGTGTGAGTTTTGCATCAGCAGGTTCCGGGTATGACGAGGCCACTGCCAGAAGTTCGAATGCACTGTCATTTCCCAACCAAATAGAGGACCTTTGGCGTTACAAAAGGAACCTGCAGAGGTTAGTTGGACGAAGAAGAGCAGAAGAACTAGTCAGGAGGGCTACATTCATCGTAAGTGCTGGAACAACAGATCTGCTTTTTCACTATCTTGCCTCAAACCAGTCAGCAGCAGAGAGCGGCCCACAGTACGAAAACCAGCTGATATCACGCGTTGCTAACTACACCCAGGTGATGGCAGCACTTGGAGGAAGGAGATTTGTCTTTGTTGGAGTGCCCCCAATTGGGTGTTTACCTATTGCTAGAACATTGCTAGGCACAGGTACAACCAGATGCCATGAAAACATGAACTTGCTGGCAACCTCATTTAATGAGAGGCTAGTTGAAGTGGTGCGTCTTCTAAAGAATCAACCAAATATCAGGGCTACATTTGTTGATACTTATACAACCATCGGCATGGCAACAATAAGCCCCAATAACTATGGCCTGACAGAAACCTCAAGAGGTTGTTGTGGAACAGGAGTTATTGAAGTTGGGCAAACATGCAGAGGCCGAAGAGCATGCACACATCCCAGCAAGTACATATACTGGGATGCTGCCCACCACACGGAGAGAATGAACCAAATTATCACAGAGGAAGTGATAATGAACTCAATTGGAGAAATTTATGCCTAGCTCACGATTGTGAATTCAGATTTGCAGCCCGACAAATCAATTTAGCATCCTAATTTACTGTGGTGCATACGAGCACATAGAACAATAGTTCAGTAGAAGAGATCGATTATATAATATTTTTCATACAAAATATGCTGTGTGCGAAAGAGAGTGTTACATCATAGACGCCCAAGACCTATGATGTCAACTGAAGTGGTTACCATTCATTCTACTTTCACTGTGATCTATAATTGTACACTTGACAACTCTTACAGGGTGTATGTTAGTTTGCAAAGTTGTCTAGCAGGTGATATCTTGATTACGCAAAATGAAATTGCTTCCAG]
consensusID : consensus_2431#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 682 fasta sequence
[TGGAGTGCCCCCCAATGGGGTGTTTACCTATTGCTAGAACATTGTTAGGCACAGGTACAACCAGATCCCATGAAAACATGAGCTTGCTGGCAACCTCATTTAATGAGAGGCTAGTTGAAGTGGTGCGTTTCTAAAGAATCAACCAAATATCAGGGCTACATTTGTTGATACTTATACAACCATCGGCATGGCAACAATAAGCCCCAATAACTATGGCCTGACAGAAACCTCAAGAGGTTGTTGTGGAACAGGAGTTATTGAAGTTGGGCAAACATGCAGAGGCCGAAGGGCATGCACACATCCCAGCAAGTACATATACTGGGATGCTGCCCACCACACGGAGAGAATGAACCAAATTATCACAGAGGAAGTGATAATGAACTCAATTGGAGAAATTTATGCCTAGCTCACGATTGTGAATTCAGATTTGCAGCCCGACAAATCAATTTAGCATCCTAATTTACTGTGGTGCATACGAGCACATAGAACAATAGTTCAGTAGAAGAGATCGATTATATAATATTTTTCATACAAAATATGCTGTGTGCGAAAAAGAGTGTTACATTATAGACGCCCAAGACCTATGATGTCAACTGAAGTGGTTACCATTTATTCTACTTTCACTGTGATCTATAATTGTACACTTGACAACTCTTACAGGGTGTAAAAAAAAAAAAAAAAA]
[-] EMBL CA762425 [TGGAGTGCCCCCCAATGGGGTGTTTACCTATTGCTAGAACATTGTTAGGCACAGGTACAACCAGATCCCATGAAAACATGAGCTTGCTGGCAACCTCATTTAATGAGAGGCTAGTTGAAGTGGTGCGTTTCTAAAGAATCAACCAAATATCAGGGCTACATTTGTTGATACTTATACAACCATCGGCATGGCAACAATAAGCCCCAATAACTATGGCCTGACAGAAACCTCAAGAGGTTGTTGTGGAACAGGAGTTATTGAAGTTGGGCAAACATGCAGAGGCCGAAGGGCATGCACACATCCCAGCAAGTACATATACTGGGATGCTGCCCACCACACGGAGAGAATGAACCAAATTATCACAGAGGAAGTGATAATGAACTCAATTGGAGAAATTTATGCCTAGCTCACGATTGTGAATTCAGATTTGCAGCCCGACAAATCAATTTAGCATCCTAATTTACTGTGGTGCATACGAGCACATAGAACAATAGTTCAGTAGAAGAGATCGATTATATAATATTTTTCATACAAAATATGCTGTGTGCGAAAAAGAGTGTTACATTATAGACGCCCAAGACCTATGATGTCAACTGAAGTGGTTACCATTTATTCTACTTTCACTGTGATCTATAATTGTACACTTGACAACTCTTACAGGGTGTAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2431#0 GCACATAACTGAACTGAGCAAAGCAACGCAGCAAGTCCATGAGGAGGCTGGCGGTGGCTG 60
consensus_2431#1 ------------------------------------------------------------
consensus_2431#0 CGGCGGCGCTGCTCCTCGTCGCATGGCACTTCTCCCTGATAACAATGGCAGCGGCGCAGC 120
consensus_2431#1 ------------------------------------------------------------
consensus_2431#0 TGTCACCGCCACAGCCACCGGACGACCAATACGACGACCCGCCCATGCCTGGGCTCCCGG 180
consensus_2431#1 ------------------------------------------------------------
consensus_2431#0 TGTCACCACCGTCGCCGGGGTATTCCGATTCGCCGGAGCCGCCGCTGCCGGATTCCCCGC 240
consensus_2431#1 ------------------------------------------------------------
consensus_2431#0 CATCACAGGAGCCTGACACGCCGGAGCCAGCACCACCAACGCCGCCCCAGCAGCAGCAGC 300
consensus_2431#1 ------------------------------------------------------------
consensus_2431#0 AGCCGTGGCAGTCTCCATTGCCACCAAGGAGGGAGCCGGCGCCGCCGCGGACGGTGGTGC 360
consensus_2431#1 ------------------------------------------------------------
consensus_2431#0 CGCCGCAGGAGCCGGGCTGGTCTTCAGTGCCGCCACCGCCGGCGAGGGTGATCAACTACA 420
consensus_2431#1 ------------------------------------------------------------
consensus_2431#0 CCACCACCGGGTGTACCACCATGCTGGTGTTCGGTGACTCGACGGTGGATCCCGGCAACA 480
consensus_2431#1 ------------------------------------------------------------
consensus_2431#0 ACAACCGGCTGCAGACGGCGATGAAGGCCAACTTCTTGCCGTACGGCGCCGACTTCCTCG 540
consensus_2431#1 ------------------------------------------------------------
consensus_2431#0 GCGGCAGGCCCACCGGCCGGTTCAGCAACGGCCGGCTCATCACGGACATACTCGCGGAAA 600
consensus_2431#1 ------------------------------------------------------------
consensus_2431#0 AACTAGGTATAGCGAGGAGTATTCCAGGATTCCGCGACCCAAGGTTGAGGTCAGGACAGC 660
consensus_2431#1 ------------------------------------------------------------
consensus_2431#0 TCAGGAGGGGTGTGAGTTTTGCATCAGCAGGTTCCGGGTATGACGAGGCCACTGCCAGAA 720
consensus_2431#1 ------------------------------------------------------------
consensus_2431#0 GTTCGAATGCACTGTCATTTCCCAACCAAATAGAGGACCTTTGGCGTTACAAAAGGAACC 780
consensus_2431#1 ------------------------------------------------------------
consensus_2431#0 TGCAGAGGTTAGTTGGACGAAGAAGAGCAGAAGAACTAGTCAGGAGGGCTACATTCATCG 840
consensus_2431#1 ------------------------------------------------------------
consensus_2431#0 TAAGTGCTGGAACAACAGATCTGCTTTTTCACTATCTTGCCTCAAACCAGTCAGCAGCAG 900
consensus_2431#1 ------------------------------------------------------------
consensus_2431#0 AGAGCGGCCCACAGTACGAAAACCAGCTGATATCACGCGTTGCTAACTACACCCAGGTGA 960
consensus_2431#1 ------------------------------------------------------------
consensus_2431#0 TGGCAGCACTTGGAGGAAGGAGATTTGTCTTTGTTGGAGTGCCCCC-AATTGGGTGTTTA 1019
consensus_2431#1 ----------------------------------TGGAGTGCCCCCCAATGGGGTGTTTA 26
************ *** *********
consensus_2431#0 CCTATTGCTAGAACATTGCTAGGCACAGGTACAACCAGATGCCATGAAAACATGAACTTG 1079
consensus_2431#1 CCTATTGCTAGAACATTGTTAGGCACAGGTACAACCAGATCCCATGAAAACATGAGCTTG 86
****************** ********************* ************** ****
consensus_2431#0 CTGGCAACCTCATTTAATGAGAGGCTAGTTGAAGTGGTGCGTCTTCTAAAGAATCAACCA 1139
consensus_2431#1 CTGGCAACCTCATTTAATGAGAGGCTAGTTGAAGTGGTGCGT-TTCTAAAGAATCAACCA 145
****************************************** *****************
consensus_2431#0 AATATCAGGGCTACATTTGTTGATACTTATACAACCATCGGCATGGCAACAATAAGCCCC 1199
consensus_2431#1 AATATCAGGGCTACATTTGTTGATACTTATACAACCATCGGCATGGCAACAATAAGCCCC 205
************************************************************
consensus_2431#0 AATAACTATGGCCTGACAGAAACCTCAAGAGGTTGTTGTGGAACAGGAGTTATTGAAGTT 1259
consensus_2431#1 AATAACTATGGCCTGACAGAAACCTCAAGAGGTTGTTGTGGAACAGGAGTTATTGAAGTT 265
************************************************************
consensus_2431#0 GGGCAAACATGCAGAGGCCGAAGAGCATGCACACATCCCAGCAAGTACATATACTGGGAT 1319
consensus_2431#1 GGGCAAACATGCAGAGGCCGAAGGGCATGCACACATCCCAGCAAGTACATATACTGGGAT 325
*********************** ************************************
consensus_2431#0 GCTGCCCACCACACGGAGAGAATGAACCAAATTATCACAGAGGAAGTGATAATGAACTCA 1379
consensus_2431#1 GCTGCCCACCACACGGAGAGAATGAACCAAATTATCACAGAGGAAGTGATAATGAACTCA 385
************************************************************
consensus_2431#0 ATTGGAGAAATTTATGCCTAGCTCACGATTGTGAATTCAGATTTGCAGCCCGACAAATCA 1439
consensus_2431#1 ATTGGAGAAATTTATGCCTAGCTCACGATTGTGAATTCAGATTTGCAGCCCGACAAATCA 445
************************************************************
consensus_2431#0 ATTTAGCATCCTAATTTACTGTGGTGCATACGAGCACATAGAACAATAGTTCAGTAGAAG 1499
consensus_2431#1 ATTTAGCATCCTAATTTACTGTGGTGCATACGAGCACATAGAACAATAGTTCAGTAGAAG 505
************************************************************
consensus_2431#0 AGATCGATTATATAATATTTTTCATACAAAATATGCTGTGTGCGAAAGAGAGTGTTACAT 1559
consensus_2431#1 AGATCGATTATATAATATTTTTCATACAAAATATGCTGTGTGCGAAAAAGAGTGTTACAT 565
*********************************************** ************
consensus_2431#0 CATAGACGCCCAAGACCTATGATGTCAACTGAAGTGGTTACCATTCATTCTACTTTCACT 1619
consensus_2431#1 TATAGACGCCCAAGACCTATGATGTCAACTGAAGTGGTTACCATTTATTCTACTTTCACT 625
******************************************** **************
consensus_2431#0 GTGATCTATAATTGTACACTTGACAACTCTTACAGGGTGTATGTTAGTTTGCAAAGTTGT 1679
consensus_2431#1 GTGATCTATAATTGTACACTTGACAACTCTTACAGGGTGTAAAAAAAAAAAAAAAAA--- 682
***************************************** * ***
consensus_2431#0 CTAGCAGGTGATATCTTGATTACGCAAAATGAAATTGCTTCCAG 1723
consensus_2431#1 --------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||