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These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 2436 cluster # 2436       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2436#0 length = 630 sequences # 1  
consensus_2436#1 length = 237 sequences # 1  

consensusID : consensus_2436#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 630
fasta sequence
                              [TTTTTTTTTTTTTTTTTATAGGAAAACACAAGGTTTATTCATATACAACTTCATGAAAATGGGAGAAAGAAGTGGCCATTTGGTAGAGCTCATGGGCCGATACGTCATTAGCTTTGGGGTATACAACAAAAATCGAACATCATACAATATCACCAAATGTGAAACATGTGCATGGCAAAATCAGTTGCCAATAATCAATCTACTCGCCTACAAAAATGAAGGGGTTGTACTACATGCAGAATGTTACAACATGTTGTATTCACAGATGCACATACATTATACATAGGGGTCATAATCATATGCTGCTGTGTCTCCAAAGAACCTGCTCATCAATTTTAGTTAGTTTTTCATCATCTAACAGCTTCCAGGTGTGGATCGACTCGACTTCCACCAATGATTTCTGCCCTTTCTTGAGTTCAGTATGAATTACCCGAGCTCTTCTTGGCCAATGAGGTCTTCCATAGGCATGATAACCAAAGCCACCACCATAACAGAACCATATCCCATTAAGGTCGCCACAAAAATCATTAAGATGGTCATGGCCAAGAAAGACAGCTTTCACATCTCCCATGGAGGTTAGGGTGGCCAAGACACCGGGAGTTTACCGTTGAGCAAGCCCCCCCTTGTCTC]

[+] EMBL CA762453             [TTTTTTTTTTTTTTTTTATAGGAAAACACAAGGTTTATTCATATACAACTTCATGAAAATGGGAGAAAGAAGTGGCCATTTGGTAGAGCTCATGGGCCGATACGTCATTAGCTTTGGGGTATACAACAAAAATCGAACATCATACAATATCACCAAATGTGAAACATGTGCATGGCAAAATCAGTTGCCAATAATCAATCTACTCGCCTACAAAAATGAAGGGGTTGTACTACATGCAGAATGTTACAACATGTTGTATTCACAGATGCACATACATTATACATAGGGGTCATAATCATATGCTGCTGTGTCTCCAAAGAACCTGCTCATCAATTTTAGTTAGTTTTTCATCATCTAACAGCTTCCAGGTGTGGATCGACTCGACTTCCACCAATGATTTCTGCCCTTTCTTGAGTTCAGTATGAATTACCCGAGCTCTTCTTGGCCAATGAGGTCTTCCATAGGCATGATAACCAAAGCCACCACCATAACAGAACCATATCCCATTAAGGTCGCCACAAAAATCATTAAGATGGTCATGGCCAAGAAAGACAGCTTTCACATCTCCCATGGAGGTTAGGGTGGCCAAGACACCGGGAGTTTACCGTTGAGCAAGCCCCCCCTTGTCTC]


>consensus_2436#0 TTTTTTTTTTTTTTTTTATAGGAAAACACAAGGTTTATTCATATACAACTTCATGAAAAT GGGAGAAAGAAGTGGCCATTTGGTAGAGCTCATGGGCCGATACGTCATTAGCTTTGGGGT ATACAACAAAAATCGAACATCATACAATATCACCAAATGTGAAACATGTGCATGGCAAAA TCAGTTGCCAATAATCAATCTACTCGCCTACAAAAATGAAGGGGTTGTACTACATGCAGA ATGTTACAACATGTTGTATTCACAGATGCACATACATTATACATAGGGGTCATAATCATA TGCTGCTGTGTCTCCAAAGAACCTGCTCATCAATTTTAGTTAGTTTTTCATCATCTAACA GCTTCCAGGTGTGGATCGACTCGACTTCCACCAATGATTTCTGCCCTTTCTTGAGTTCAG TATGAATTACCCGAGCTCTTCTTGGCCAATGAGGTCTTCCATAGGCATGATAACCAAAGC CACCACCATAACAGAACCATATCCCATTAAGGTCGCCACAAAAATCATTAAGATGGTCAT GGCCAAGAAAGACAGCTTTCACATCTCCCATGGAGGTTAGGGTGGCCAAGACACCGGGAG TTTACCGTTGAGCAAGCCCCCCCTTGTCTC



consensusID : consensus_2436#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 237
fasta sequence
                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAACGACGAAATATATACACATTTTCAGGGATGAATATAGTAAAACACAAGGTTTATTCATATACAACTTCATGAAAATGGGAGAAAAAAGTGGCCATTTGGTAGAACTCATGGGCCGATACGTCATTAGCTTTGTGGTATACAACAAAAATCGAACATCATACAATATCACCAAATGTGAAACATGTGCATGGCAAAATCAGTTGCC]

[-] EMBL CF299882             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAACGACGAAATATATACACATTTTCAGGGATGAATATAGTAAAACACAAGGTTTATTCATATACAACTTCATGAAAATGGGAGAAAAAAGTGGCCATTTGGTAGAACTCATGGGCCGATACGTCATTAGCTTTGTGGTATACAACAAAAATCGAACATCATACAATATCACCAAATGTGAAACATGTGCATGGCAAAATCAGTTGCC]


>consensus_2436#1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAACGACGAAATATATACACATTTTCAGGGA TGAATATAGTAAAACACAAGGTTTATTCATATACAACTTCATGAAAATGGGAGAAAAAAG TGGCCATTTGGTAGAACTCATGGGCCGATACGTCATTAGCTTTGTGGTATACAACAAAAA TCGAACATCATACAATATCACCAAATGTGAAACATGTGCATGGCAAAATCAGTTGCC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2436#0      ------------------------------------------------TTTTTTTTTTTT 12
consensus_2436#1      TTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAACGACGAAATATATACACATTTTCAGGGA 60
                                                                        ****      

consensus_2436#0      TTTTTATAGGAAAACACAAGGTTTATTCATATACAACTTCATGAAAATGGGAGAAAGAAG 72
consensus_2436#1      TGAATATAGTAAAACACAAGGTTTATTCATATACAACTTCATGAAAATGGGAGAAAAAAG 120
                      *   ***** ********************************************** ***

consensus_2436#0      TGGCCATTTGGTAGAGCTCATGGGCCGATACGTCATTAGCTTTGGGGTATACAACAAAAA 132
consensus_2436#1      TGGCCATTTGGTAGAACTCATGGGCCGATACGTCATTAGCTTTGTGGTATACAACAAAAA 180
                      *************** **************************** ***************

consensus_2436#0      TCGAACATCATACAATATCACCAAATGTGAAACATGTGCATGGCAAAATCAGTTGCCAAT 192
consensus_2436#1      TCGAACATCATACAATATCACCAAATGTGAAACATGTGCATGGCAAAATCAGTTGCC--- 237
                      *********************************************************   

consensus_2436#0      AATCAATCTACTCGCCTACAAAAATGAAGGGGTTGTACTACATGCAGAATGTTACAACAT 252
consensus_2436#1      ------------------------------------------------------------
                                                                                  

consensus_2436#0      GTTGTATTCACAGATGCACATACATTATACATAGGGGTCATAATCATATGCTGCTGTGTC 312
consensus_2436#1      ------------------------------------------------------------
                                                                                  

consensus_2436#0      TCCAAAGAACCTGCTCATCAATTTTAGTTAGTTTTTCATCATCTAACAGCTTCCAGGTGT 372
consensus_2436#1      ------------------------------------------------------------
                                                                                  

consensus_2436#0      GGATCGACTCGACTTCCACCAATGATTTCTGCCCTTTCTTGAGTTCAGTATGAATTACCC 432
consensus_2436#1      ------------------------------------------------------------
                                                                                  

consensus_2436#0      GAGCTCTTCTTGGCCAATGAGGTCTTCCATAGGCATGATAACCAAAGCCACCACCATAAC 492
consensus_2436#1      ------------------------------------------------------------
                                                                                  

consensus_2436#0      AGAACCATATCCCATTAAGGTCGCCACAAAAATCATTAAGATGGTCATGGCCAAGAAAGA 552
consensus_2436#1      ------------------------------------------------------------
                                                                                  

consensus_2436#0      CAGCTTTCACATCTCCCATGGAGGTTAGGGTGGCCAAGACACCGGGAGTTTACCGTTGAG 612
consensus_2436#1      ------------------------------------------------------------
                                                                                  

consensus_2436#0      CAAGCCCCCCCTTGTCTC 630
consensus_2436#1      ------------------
                                        




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)