These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2436#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 630 fasta sequence [TTTTTTTTTTTTTTTTTATAGGAAAACACAAGGTTTATTCATATACAACTTCATGAAAATGGGAGAAAGAAGTGGCCATTTGGTAGAGCTCATGGGCCGATACGTCATTAGCTTTGGGGTATACAACAAAAATCGAACATCATACAATATCACCAAATGTGAAACATGTGCATGGCAAAATCAGTTGCCAATAATCAATCTACTCGCCTACAAAAATGAAGGGGTTGTACTACATGCAGAATGTTACAACATGTTGTATTCACAGATGCACATACATTATACATAGGGGTCATAATCATATGCTGCTGTGTCTCCAAAGAACCTGCTCATCAATTTTAGTTAGTTTTTCATCATCTAACAGCTTCCAGGTGTGGATCGACTCGACTTCCACCAATGATTTCTGCCCTTTCTTGAGTTCAGTATGAATTACCCGAGCTCTTCTTGGCCAATGAGGTCTTCCATAGGCATGATAACCAAAGCCACCACCATAACAGAACCATATCCCATTAAGGTCGCCACAAAAATCATTAAGATGGTCATGGCCAAGAAAGACAGCTTTCACATCTCCCATGGAGGTTAGGGTGGCCAAGACACCGGGAGTTTACCGTTGAGCAAGCCCCCCCTTGTCTC] [+] EMBL CA762453 [TTTTTTTTTTTTTTTTTATAGGAAAACACAAGGTTTATTCATATACAACTTCATGAAAATGGGAGAAAGAAGTGGCCATTTGGTAGAGCTCATGGGCCGATACGTCATTAGCTTTGGGGTATACAACAAAAATCGAACATCATACAATATCACCAAATGTGAAACATGTGCATGGCAAAATCAGTTGCCAATAATCAATCTACTCGCCTACAAAAATGAAGGGGTTGTACTACATGCAGAATGTTACAACATGTTGTATTCACAGATGCACATACATTATACATAGGGGTCATAATCATATGCTGCTGTGTCTCCAAAGAACCTGCTCATCAATTTTAGTTAGTTTTTCATCATCTAACAGCTTCCAGGTGTGGATCGACTCGACTTCCACCAATGATTTCTGCCCTTTCTTGAGTTCAGTATGAATTACCCGAGCTCTTCTTGGCCAATGAGGTCTTCCATAGGCATGATAACCAAAGCCACCACCATAACAGAACCATATCCCATTAAGGTCGCCACAAAAATCATTAAGATGGTCATGGCCAAGAAAGACAGCTTTCACATCTCCCATGGAGGTTAGGGTGGCCAAGACACCGGGAGTTTACCGTTGAGCAAGCCCCCCCTTGTCTC] consensusID : consensus_2436#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 237 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAACGACGAAATATATACACATTTTCAGGGATGAATATAGTAAAACACAAGGTTTATTCATATACAACTTCATGAAAATGGGAGAAAAAAGTGGCCATTTGGTAGAACTCATGGGCCGATACGTCATTAGCTTTGTGGTATACAACAAAAATCGAACATCATACAATATCACCAAATGTGAAACATGTGCATGGCAAAATCAGTTGCC] [-] EMBL CF299882 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAACGACGAAATATATACACATTTTCAGGGATGAATATAGTAAAACACAAGGTTTATTCATATACAACTTCATGAAAATGGGAGAAAAAAGTGGCCATTTGGTAGAACTCATGGGCCGATACGTCATTAGCTTTGTGGTATACAACAAAAATCGAACATCATACAATATCACCAAATGTGAAACATGTGCATGGCAAAATCAGTTGCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2436#0 ------------------------------------------------TTTTTTTTTTTT 12 consensus_2436#1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAACGACGAAATATATACACATTTTCAGGGA 60 **** consensus_2436#0 TTTTTATAGGAAAACACAAGGTTTATTCATATACAACTTCATGAAAATGGGAGAAAGAAG 72 consensus_2436#1 TGAATATAGTAAAACACAAGGTTTATTCATATACAACTTCATGAAAATGGGAGAAAAAAG 120 * ***** ********************************************** *** consensus_2436#0 TGGCCATTTGGTAGAGCTCATGGGCCGATACGTCATTAGCTTTGGGGTATACAACAAAAA 132 consensus_2436#1 TGGCCATTTGGTAGAACTCATGGGCCGATACGTCATTAGCTTTGTGGTATACAACAAAAA 180 *************** **************************** *************** consensus_2436#0 TCGAACATCATACAATATCACCAAATGTGAAACATGTGCATGGCAAAATCAGTTGCCAAT 192 consensus_2436#1 TCGAACATCATACAATATCACCAAATGTGAAACATGTGCATGGCAAAATCAGTTGCC--- 237 ********************************************************* consensus_2436#0 AATCAATCTACTCGCCTACAAAAATGAAGGGGTTGTACTACATGCAGAATGTTACAACAT 252 consensus_2436#1 ------------------------------------------------------------ consensus_2436#0 GTTGTATTCACAGATGCACATACATTATACATAGGGGTCATAATCATATGCTGCTGTGTC 312 consensus_2436#1 ------------------------------------------------------------ consensus_2436#0 TCCAAAGAACCTGCTCATCAATTTTAGTTAGTTTTTCATCATCTAACAGCTTCCAGGTGT 372 consensus_2436#1 ------------------------------------------------------------ consensus_2436#0 GGATCGACTCGACTTCCACCAATGATTTCTGCCCTTTCTTGAGTTCAGTATGAATTACCC 432 consensus_2436#1 ------------------------------------------------------------ consensus_2436#0 GAGCTCTTCTTGGCCAATGAGGTCTTCCATAGGCATGATAACCAAAGCCACCACCATAAC 492 consensus_2436#1 ------------------------------------------------------------ consensus_2436#0 AGAACCATATCCCATTAAGGTCGCCACAAAAATCATTAAGATGGTCATGGCCAAGAAAGA 552 consensus_2436#1 ------------------------------------------------------------ consensus_2436#0 CAGCTTTCACATCTCCCATGGAGGTTAGGGTGGCCAAGACACCGGGAGTTTACCGTTGAG 612 consensus_2436#1 ------------------------------------------------------------ consensus_2436#0 CAAGCCCCCCCTTGTCTC 630 consensus_2436#1 ------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||