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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2445#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2075 fasta sequence
[CGTAATAATAATCAGGTTGAGCTCCAGCATCCGGGGCACGGGGAGGAGGAAGGAGGGATCGGGGGATCCATGGCGGACACCGGCGGACGGCCGGAGGTGTCGCTGGCCACGGTCCGGTCGCCGGGCCACCCGGCAGCTTCTACGACGGCAGCGGCGGCGGCGGATCTCGGCCACGCTGACACCGGGCAAGAGAAGCCCACCGTCGAGAGCGCCCAACCGGCGAACGGTGCCGCTCCGATGGGCGAGTGCGGCACGGAGTACAGGGGCCTCCCCGACGGCGACGCCGGCGGGCCAATGCCGTCGTCGGCACGCACGGTTTCGATGATCCCGCTCATCTTCCTCATCTTCTACGAGGTGTCCGGCGGGCCGTTCGGGATCGAGGACAGCGTGGGCGCGGCCGGGCCGCTGCTCGCCATCATCGGCTTCTTGGTCCTCCCCGTCATCTGGAGCATCCCGGAGGCGCTGATCACGGCGGAGCTGGGCGCCATGTTCCCGGAGAACGGCGGGTACGTCGTGTGGGTGGCGTCGGCGCTCGGCCCGTACTGGGGGTTCCAGCAAGGGTGGATGAAGTGGTTGAGCGGCGTCATCGACAACGCGCTCTACCCCGTCCTCTTCTTGGACTACCTCAAGTCCGGCGTCCCGGCGCTCGGCGGAGGCGCGCCGAGGGCGTTCGCCGTCGTCGGCCTGACGGCCGTGCTGACATTGCTGAATTACCGGGGGCTCACCGTCGTCGGATGGGTGGCGATCTGCCTTGGCGTCTTCTCCCTCCTCCCTTTTTTCGTCATGGGGCTCATCGCGCTCCCCAAGCTCCGGCCGGCGAGGTGGCTCGTGATCGACCTCCACAACGTCGATTGGAATCTGTACCTGAACACTCTGTTCTGGAACCTCAACTACTGGGATTCGATCAGCACGTTGGCCGGCGAGGTGAAGAATCCCGGCAAGACGCTGCCCAAGGCGCTGTTCTACGCGGTCATCTTCGTGGTGGTCGCCTACCTGTACCCTCTCCTCGCCGGGACGGGAGCCGTGCCGCTGGACAGGGGGCAGTGGACAGACGGCTACTTCGCGGACATCGCGAAGCTGCTCGGCGGCGCGTGGCTGATGTGGTGGGTGCAGTCGGCGGCGGCGCTGTCGAACATGGGCATGTTCGTGGCGGAGATGAGCAGCGACTCGTACCAGCTGCTGGGCATGGCGGAGCGGGGCATGCTCCCGTCCTTCTTCGCGGCGCGGTCGCGGTACGGCACGCCGCTGGCGGGCATCCTCTTCTCGGCCTCCGGCGTGCTGCTGCTCTCGATGATGAGCTTCCAGGAGATCGTGGCGGCCGAGAACTTCCTCTACTGCTTCGGCATGCTCCTCGAGTTCGTCGCCTTCATCCTGCACCGGGTGAGGCGCCCCGACGCGGCGCGCCCATACAGGGTGCCGCTGGGCACAGCCGGGTGCGTGGCGATGCTGGTGCCGCCGACGGCGCTGATCGCCGTGGTGCTCGCGCTGTCCACGCTGAAGGTGGCGGTGGTGAGCCTCGGCGCGGTGGCCATGGGGCTCGTGCTGCAGCCGGCGCTGAGGTTCGTGGAGAAGAAGCGGTGGCTGAGGTTCTCCGTTAACCCGGATCTCCCGGAGATCGGCGTGATTCGCCCGCCCGCCGCGCCGGACGAGCCGTTGGTTCCGTAGGACGCCCAGAAATCAGTTAGGCCCTGGAACTGGAAAATGGACAATTTGGATTGCAGTCCAACTATAGGGAGAAAATAGAAGTCCTGCAGAATCATGTATACGTTGCAACAAAAAGAATTTAATCCAACGAAATCCACTGAAATCAACGGAAGCACTATTCTGTTGGAATTTTGGAGAAATTTTTCCATGAGTTCAAAGCTCTTTCTTTGTTTTGAATGAAGACTGTGAGTTCAAACCTCGTCTTCACATCTTATTGCTGCTCATGCAATCCCGTGCTTGTCATGTATTGCATTAAGGCATTTTTTTTACAGGAATCATGGCACCTTAGTTACATGTGTTGTAAACTTTCAATTTGTGTTTTTTTTACCTTTTTCATTTAGGATTTAAAAAGGTGGTGCACTAATATTAAT]
[+] EMBL AK068055 [CGTAATAATAATCAGGTTGAGCTCCAGCATCCGGGGCACGGGGAGGAGGAAGGAGGGATCGGGGGATCCATGGCGGACACCGGCGGACGGCCGGAGGTGTCGCTGGCCACGGTCCGGTCGCCGGGCCACCCGGCAGCTTCTACGACGGCAGCGGCGGCGGCGGATCTCGGCCACGCTGACACCGGGCAAGAGAAGCCCACCGTCGAGAGCGCCCAACCGGCGAACGGTGCCGCTCCGATGGGCGAGTGCGGCACGGAGTACAGGGGCCTCCCCGACGGCGACGCCGGCGGGCCAATGCCGTCGTCGGCACGCACGGTTTCGATGATCCCGCTCATCTTCCTCATCTTCTACGAGGTGTCCGGCGGGCCGTTCGGGATCGAGGACAGCGTGGGCGCGGCCGGGCCGCTGCTCGCCATCATCGGCTTCTTGGTCCTCCCCGTCATCTGGAGCATCCCGGAGGCGCTGATCACGGCGGAGCTGGGCGCCATGTTCCCGGAGAACGGCGGGTACGTCGTGTGGGTGGCGTCGGCGCTCGGCCCGTACTGGGGGTTCCAGCAAGGGTGGATGAAGTGGTTGAGCGGCGTCATCGACAACGCGCTCTACCCCGTCCTCTTCTTGGACTACCTCAAGTCCGGCGTCCCGGCGCTCGGCGGAGGCGCGCCGAGGGCGTTCGCCGTCGTCGGCCTGACGGCCGTGCTGACATTGCTGAATTACCGGGGGCTCACCGTCGTCGGATGGGTGGCGATCTGCCTTGGCGTCTTCTCCCTCCTCCCTTTTTTCGTCATGGGGCTCATCGCGCTCCCCAAGCTCCGGCCGGCGAGGTGGCTCGTGATCGACCTCCACAACGTCGATTGGAATCTGTACCTGAACACTCTGTTCTGGAACCTCAACTACTGGGATTCGATCAGCACGTTGGCCGGCGAGGTGAAGAATCCCGGCAAGACGCTGCCCAAGGCGCTGTTCTACGCGGTCATCTTCGTGGTGGTCGCCTACCTGTACCCTCTCCTCGCCGGGACGGGAGCCGTGCCGCTGGACAGGGGGCAGTGGACAGACGGCTACTTCGCGGACATCGCGAAGCTGCTCGGCGGCGCGTGGCTGATGTGGTGGGTGCAGTCGGCGGCGGCGCTGTCGAACATGGGCATGTTCGTGGCGGAGATGAGCAGCGACTCGTACCAGCTGCTGGGCATGGCGGAGCGGGGCATGCTCCCGTCCTTCTTCGCGGCGCGGTCGCGGTACGGCACGCCGCTGGCGGGCATCCTCTTCTCGGCCTCCGGCGTGCTGCTGCTCTCGATGATGAGCTTCCAGGAGATCGTGGCGGCCGAGAACTTCCTCTACTGCTTCGGCATGCTCCTCGAGTTCGTCGCCTTCATCCTGCACCGGGTGAGGCGCCCCGACGCGGCGCGCCCATACAGGGTGCCGCTGGGCACAGCCGGGTGCGTGGCGATGCTGGTGCCGCCGACGGCGCTGATCGCCGTGGTGCTCGCGCTGTCCACGCTGAAGGTGGCGGTGGTGAGCCTCGGCGCGGTGGCCATGGGGCTCGTGCTGCAGCCGGCGCTGAGGTTCGTGGAGAAGAAGCGGTGGCTGAGGTTCTCCGTTAACCCGGATCTCCCGGAGATCGGCGTGATTCGCCCGCCCGCCGCGCCGGACGAGCCGTTGGTTCCGTAGGACGCCCAGAAATCAGTTAGGCCCTGGAACTGGAAAATGGACAATTTGGATTGCAGTCCAACTATAGGGAGAAAATAGAAGTCCTGCAGAATCATGTATACGTTGCAACAAAAAGAATTTAATCCAACGAAATCCACTGAAATCAACGGAAGCACTATTCTGTTGGAATTTTGGAGAAATTTTTCCATGAGTTCAAAGCTCTTTCTTTGTTTTGAATGAAGACTGTGAGTTCAAACCTCGTCTTCACATCTTATTGCTGCTCATGCAATCCCGTGCTTGTCATGTATTGCATTAAGGCATTTTTTTTACAGGAATCATGGCACCTTAGTTACATGTGTTGTAAACTTTCAATTTGTGTTTTTTTTACCTTTTTCATTTAGGATTTAAAAAGGTGGTGCACTAATATTAAT]
consensusID : consensus_2445#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 563 fasta sequence
[GCGCTTTATGCTCACGCTGGTGATAATTTGTAAACTGGAAAGCGACGTACTGCCACTATTTATGCTGGATGCGCGCTTCCACTCCGCACGGCCGGAGGCGTAATAATAATCAGGTTGAGCTCCAGCATCCGGGGCACGGGGAGGAGGAAGGAGGGATCGGGGGATCCATGGCGGACACCGGCGGACGGCCGGAGGTGTCGCTGGCCACGGTCCGGTCGCCGGGCCACCCGGCAGCTTCTACGACGGCAGCGGCGGCGGCGGATCTCGGCCACGCTGACACCGGGCAAGAGAAGCCCACCGTCGAGCGCCCAACCGGCGAACGGTGCCGCTCCGATGGGCGAGTGCGGCACGGAGTACAGGGGCCTCCCCGACGGCGACGCCGGCGGGCCAATGCCGTCGTCGGCACGCACGGTTTCGATGATCCCTGCCCTTTGTACACACCGCCCGTCGCTGAAAAGATAGAAAAGAGAGAAAAAAGGAAAAAGAAGACAGACATAGAATAAGAATAATAGAATATAAATAGCAGAGGAGTAAACAGATAGAGAAGTGAAAGAAGATGAAGA]
[+] EMBL AK105354 [GCGCTTTATGCTCACGCTGGTGATAATTTGTAAACTGGAAAGCGACGTACTGCCACTATTTATGCTGGATGCGCGCTTCCACTCCGCACGGCCGGAGGCGTAATAATAATCAGGTTGAGCTCCAGCATCCGGGGCACGGGGAGGAGGAAGGAGGGATCGGGGGATCCATGGCGGACACCGGCGGACGGCCGGAGGTGTCGCTGGCCACGGTCCGGTCGCCGGGCCACCCGGCAGCTTCTACGACGGCAGCGGCGGCGGCGGATCTCGGCCACGCTGACACCGGGCAAGAGAAGCCCACCGTCGAGCGCCCAACCGGCGAACGGTGCCGCTCCGATGGGCGAGTGCGGCACGGAGTACAGGGGCCTCCCCGACGGCGACGCCGGCGGGCCAATGCCGTCGTCGGCACGCACGGTTTCGATGATCCCTGCCCTTTGTACACACCGCCCGTCGCTGAAAAGATAGAAAAGAGAGAAAAAAGGAAAAAGAAGACAGACATAGAATAAGAATAATAGAATATAAATAGCAGAGGAGTAAACAGATAGAGAAGTGAAAGAAGATGAAGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2445#0 ------------------------------------------------------------
consensus_2445#1 GCGCTTTATGCTCACGCTGGTGATAATTTGTAAACTGGAAAGCGACGTACTGCCACTATT 60
consensus_2445#0 --------------------------------------CGTAATAATAATCAGGTTGAGC 22
consensus_2445#1 TATGCTGGATGCGCGCTTCCACTCCGCACGGCCGGAGGCGTAATAATAATCAGGTTGAGC 120
**********************
consensus_2445#0 TCCAGCATCCGGGGCACGGGGAGGAGGAAGGAGGGATCGGGGGATCCATGGCGGACACCG 82
consensus_2445#1 TCCAGCATCCGGGGCACGGGGAGGAGGAAGGAGGGATCGGGGGATCCATGGCGGACACCG 180
************************************************************
consensus_2445#0 GCGGACGGCCGGAGGTGTCGCTGGCCACGGTCCGGTCGCCGGGCCACCCGGCAGCTTCTA 142
consensus_2445#1 GCGGACGGCCGGAGGTGTCGCTGGCCACGGTCCGGTCGCCGGGCCACCCGGCAGCTTCTA 240
************************************************************
consensus_2445#0 CGACGGCAGCGGCGGCGGCGGATCTCGGCCACGCTGACACCGGGCAAGAGAAGCCCACCG 202
consensus_2445#1 CGACGGCAGCGGCGGCGGCGGATCTCGGCCACGCTGACACCGGGCAAGAGAAGCCCACCG 300
************************************************************
consensus_2445#0 TCGAGAGCGCCCAACCGGCGAACGGTGCCGCTCCGATGGGCGAGTGCGGCACGGAGTACA 262
consensus_2445#1 TCGA--GCGCCCAACCGGCGAACGGTGCCGCTCCGATGGGCGAGTGCGGCACGGAGTACA 358
**** ******************************************************
consensus_2445#0 GGGGCCTCCCCGACGGCGACGCCGGCGGGCCAATGCCGTCGTCGGCACGCACGGTTTCGA 322
consensus_2445#1 GGGGCCTCCCCGACGGCGACGCCGGCGGGCCAATGCCGTCGTCGGCACGCACGGTTTCGA 418
************************************************************
consensus_2445#0 TGATCCC-GCTCATCTTCCTCATCTTCTACGAGGTGTCCGGCGGGCCGTTCGGGATCGAG 381
consensus_2445#1 TGATCCCTGCCCTTTGTACACACCGCCC-----GTCGCTGAAAAGATAGAAAAGAGAGAA 473
******* ** * * * * ** * * ** * * * ** **
consensus_2445#0 GACAGCGTGGGCGCGGCCGGGCCGCTGCTCGCCATCATCGGCTTCTTGGTCCTCCCCGTC 441
consensus_2445#1 AAAAG-GAAAAAGAAGACAGACATAGAATAAGAATAATAGAATATAAATAGCAGAGGAGT 532
* ** * * * * * * * ** ** * * *
consensus_2445#0 ATCTGGAGCATCCCGGAGGCGCTGATCACGGCGGAGCTGGGCGCCATGTTCCCGGAGAAC 501
consensus_2445#1 AAACAGA------TAGAGAAGTGAAAGAAGATGAAGA----------------------- 563
* ** *** * * * * * **
consensus_2445#0 GGCGGGTACGTCGTGTGGGTGGCGTCGGCGCTCGGCCCGTACTGGGGGTTCCAGCAAGGG 561
consensus_2445#1 ------------------------------------------------------------
consensus_2445#0 TGGATGAAGTGGTTGAGCGGCGTCATCGACAACGCGCTCTACCCCGTCCTCTTCTTGGAC 621
consensus_2445#1 ------------------------------------------------------------
consensus_2445#0 TACCTCAAGTCCGGCGTCCCGGCGCTCGGCGGAGGCGCGCCGAGGGCGTTCGCCGTCGTC 681
consensus_2445#1 ------------------------------------------------------------
consensus_2445#0 GGCCTGACGGCCGTGCTGACATTGCTGAATTACCGGGGGCTCACCGTCGTCGGATGGGTG 741
consensus_2445#1 ------------------------------------------------------------
consensus_2445#0 GCGATCTGCCTTGGCGTCTTCTCCCTCCTCCCTTTTTTCGTCATGGGGCTCATCGCGCTC 801
consensus_2445#1 ------------------------------------------------------------
consensus_2445#0 CCCAAGCTCCGGCCGGCGAGGTGGCTCGTGATCGACCTCCACAACGTCGATTGGAATCTG 861
consensus_2445#1 ------------------------------------------------------------
consensus_2445#0 TACCTGAACACTCTGTTCTGGAACCTCAACTACTGGGATTCGATCAGCACGTTGGCCGGC 921
consensus_2445#1 ------------------------------------------------------------
consensus_2445#0 GAGGTGAAGAATCCCGGCAAGACGCTGCCCAAGGCGCTGTTCTACGCGGTCATCTTCGTG 981
consensus_2445#1 ------------------------------------------------------------
consensus_2445#0 GTGGTCGCCTACCTGTACCCTCTCCTCGCCGGGACGGGAGCCGTGCCGCTGGACAGGGGG 1041
consensus_2445#1 ------------------------------------------------------------
consensus_2445#0 CAGTGGACAGACGGCTACTTCGCGGACATCGCGAAGCTGCTCGGCGGCGCGTGGCTGATG 1101
consensus_2445#1 ------------------------------------------------------------
consensus_2445#0 TGGTGGGTGCAGTCGGCGGCGGCGCTGTCGAACATGGGCATGTTCGTGGCGGAGATGAGC 1161
consensus_2445#1 ------------------------------------------------------------
consensus_2445#0 AGCGACTCGTACCAGCTGCTGGGCATGGCGGAGCGGGGCATGCTCCCGTCCTTCTTCGCG 1221
consensus_2445#1 ------------------------------------------------------------
consensus_2445#0 GCGCGGTCGCGGTACGGCACGCCGCTGGCGGGCATCCTCTTCTCGGCCTCCGGCGTGCTG 1281
consensus_2445#1 ------------------------------------------------------------
consensus_2445#0 CTGCTCTCGATGATGAGCTTCCAGGAGATCGTGGCGGCCGAGAACTTCCTCTACTGCTTC 1341
consensus_2445#1 ------------------------------------------------------------
consensus_2445#0 GGCATGCTCCTCGAGTTCGTCGCCTTCATCCTGCACCGGGTGAGGCGCCCCGACGCGGCG 1401
consensus_2445#1 ------------------------------------------------------------
consensus_2445#0 CGCCCATACAGGGTGCCGCTGGGCACAGCCGGGTGCGTGGCGATGCTGGTGCCGCCGACG 1461
consensus_2445#1 ------------------------------------------------------------
consensus_2445#0 GCGCTGATCGCCGTGGTGCTCGCGCTGTCCACGCTGAAGGTGGCGGTGGTGAGCCTCGGC 1521
consensus_2445#1 ------------------------------------------------------------
consensus_2445#0 GCGGTGGCCATGGGGCTCGTGCTGCAGCCGGCGCTGAGGTTCGTGGAGAAGAAGCGGTGG 1581
consensus_2445#1 ------------------------------------------------------------
consensus_2445#0 CTGAGGTTCTCCGTTAACCCGGATCTCCCGGAGATCGGCGTGATTCGCCCGCCCGCCGCG 1641
consensus_2445#1 ------------------------------------------------------------
consensus_2445#0 CCGGACGAGCCGTTGGTTCCGTAGGACGCCCAGAAATCAGTTAGGCCCTGGAACTGGAAA 1701
consensus_2445#1 ------------------------------------------------------------
consensus_2445#0 ATGGACAATTTGGATTGCAGTCCAACTATAGGGAGAAAATAGAAGTCCTGCAGAATCATG 1761
consensus_2445#1 ------------------------------------------------------------
consensus_2445#0 TATACGTTGCAACAAAAAGAATTTAATCCAACGAAATCCACTGAAATCAACGGAAGCACT 1821
consensus_2445#1 ------------------------------------------------------------
consensus_2445#0 ATTCTGTTGGAATTTTGGAGAAATTTTTCCATGAGTTCAAAGCTCTTTCTTTGTTTTGAA 1881
consensus_2445#1 ------------------------------------------------------------
consensus_2445#0 TGAAGACTGTGAGTTCAAACCTCGTCTTCACATCTTATTGCTGCTCATGCAATCCCGTGC 1941
consensus_2445#1 ------------------------------------------------------------
consensus_2445#0 TTGTCATGTATTGCATTAAGGCATTTTTTTTACAGGAATCATGGCACCTTAGTTACATGT 2001
consensus_2445#1 ------------------------------------------------------------
consensus_2445#0 GTTGTAAACTTTCAATTTGTGTTTTTTTTACCTTTTTCATTTAGGATTTAAAAAGGTGGT 2061
consensus_2445#1 ------------------------------------------------------------
consensus_2445#0 GCACTAATATTAAT 2075
consensus_2445#1 --------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||