cluster # 2456

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Oryza sativa
cluster # 2456 cluster # 2456 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2456#0 length = 393 sequences # 1

consensus_2456#1 length = 193 sequences # 1

consensusID : consensus_2456#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 393
fasta sequence

                              [CGAGCTACTACTACTACCCATCTCTCTGCTTCTCGCCAGAAAGATCTAGAAGTCGAAGCCCTAATCCTCTTCCGAGTTCCGAAGACAATGGCCGGGTCTCAGGATGAAGGCGCTCGCGGTCGCCGCCATCGCCGCGTCCCTCGTCGCGTCASGCAGCCGACCACGCGCCGGCACCGGSCCCGTCTCCGACGCCGCCCCCGCGGTGCCCCTCGCGGCCGCCTCCCTCGCAGCCGCCGCGTTCGGCTACCTCTTCTGCTAGATCGATCCCCTTCGATCTGCCTCGGGCTGATCCGYTTCGTCGTCGTCGTGTGCGTGTCTCCGTCCGTCGTGTGGTCGTCGCGTGGGGGGGVATTTKTGTATGTAAWWAATGAGTCGCCGTTGTGTGAGGAGGSA]

[+] EMBL BE229517             [CGAGCTACTACTACTACCCATCTCTCTGCTTCTCGCCAGAAAGATCTAGAAGTCGAAGCCCTAATCCTCTTCCGAGTTCCGAAGACAATGGCCGGGTCTCAGGATGAAGGCGCTCGCGGTCGCCGCCATCGCCGCGTCCCTCGTCGCGTCASGCAGCCGACCACGCGCCGGCACCGGSCCCGTCTCCGACGCCGCCCCCGCGGTGCCCCTCGCGGCCGCCTCCCTCGCAGCCGCCGCGTTCGGCTACCTCTTCTGCTAGATCGATCCCCTTCGATCTGCCTCGGGCTGATCCGYTTCGTCGTCGTCGTGTGCGTGTCTCCGTCCGTCGTGTGGTCGTCGCGTGGGGGGGVATTTKTGTATGTAAWWAATGAGTCGCCGTTGTGTGAGGAGGSA]




>consensus_2456#0
CGAGCTACTACTACTACCCATCTCTCTGCTTCTCGCCAGAAAGATCTAGAAGTCGAAGCC
CTAATCCTCTTCCGAGTTCCGAAGACAATGGCCGGGTCTCAGGATGAAGGCGCTCGCGGT
CGCCGCCATCGCCGCGTCCCTCGTCGCGTCASGCAGCCGACCACGCGCCGGCACCGGSCC
CGTCTCCGACGCCGCCCCCGCGGTGCCCCTCGCGGCCGCCTCCCTCGCAGCCGCCGCGTT
CGGCTACCTCTTCTGCTAGATCGATCCCCTTCGATCTGCCTCGGGCTGATCCGYTTCGTC
GTCGTCGTGTGCGTGTCTCCGTCCGTCGTGTGGTCGTCGCGTGGGGGGGVATTTKTGTAT
GTAAWWAATGAGTCGCCGTTGTGTGAGGAGGSA

consensusID : consensus_2456#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 193
fasta sequence

                              [GCCAGAAAAGATCTAGAAGTCGAAGCCCTAATCCTCTTCCGAGTTCCGAAGACAATGGCCGGTCTCAGGATGAAGGNGCTCGCGGTCGCCGCCATCGCCGCGTCCNTCGTNGCGTCAGGCAGCCGACCACGCGCCGGCACCGGNCNCGTTTCCAANGCCGCCCCCGCGGTGCCCCTNGCGGCCGANTCCTTCG]

[+] EMBL OS1321830            [GCCAGAAAAGATCTAGAAGTCGAAGCCCTAATCCTCTTCCGAGTTCCGAAGACAATGGCCGGTCTCAGGATGAAGGNGCTCGCGGTCGCCGCCATCGCCGCGTCCNTCGTNGCGTCAGGCAGCCGACCACGCGCCGGCACCGGNCNCGTTTCCAANGCCGCCCCCGCGGTGCCCCTNGCGGCCGANTCCTTCG]




>consensus_2456#1
GCCAGAAAAGATCTAGAAGTCGAAGCCCTAATCCTCTTCCGAGTTCCGAAGACAATGGCC
GGTCTCAGGATGAAGGNGCTCGCGGTCGCCGCCATCGCCGCGTCCNTCGTNGCGTCAGGC
AGCCGACCACGCGCCGGCACCGGNCNCGTTTCCAANGCCGCCCCCGCGGTGCCCCTNGCG
GCCGANTCCTTCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2456#0      CGAGCTACTACTACTACCCATCTCTCTGCTTCTCGCCAGAAA-GATCTAGAAGTCGAAGC 59
consensus_2456#1      ----------------------------------GCCAGAAAAGATCTAGAAGTCGAAGC 26
                                                        ******** *****************

consensus_2456#0      CCTAATCCTCTTCCGAGTTCCGAAGACAATGGCCGGGTCTCAGGATGAAGGCGCTCGCGG 119
consensus_2456#1      CCTAATCCTCTTCCGAGTTCCGAAGACAATGGCCGG-TCTCAGGATGAAGGNGCTCGCGG 85
                      ************************************ ************** ********

consensus_2456#0      TCGCCGCCATCGCCGCGTCCCTCGTCGCGTCASGCAGCCGACCACGCGCCGGCACCGGSC 179
consensus_2456#1      TCGCCGCCATCGCCGCGTCCNTCGTNGCGTCAGGCAGCCGACCACGCGCCGGCACCGGNC 145
                      ******************** **** ****** ************************* *

consensus_2456#0      CCGTCTCCGACGCCGCCCCCGCGGTGCCCCTCGCGGCCGCCTCCCTCGCAGCCGCCGCGT 239
consensus_2456#1      NCGTTTCCAANGCCGCCCCCGCGGTGCCCCTNGCGGCCGANTCCTTCG------------ 193
                       *** *** * ******************** *******  *** ***            

consensus_2456#0      TCGGCTACCTCTTCTGCTAGATCGATCCCCTTCGATCTGCCTCGGGCTGATCCGYTTCGT 299
consensus_2456#1      ------------------------------------------------------------
                                                                                  

consensus_2456#0      CGTCGTCGTGTGCGTGTCTCCGTCCGTCGTGTGGTCGTCGCGTGGGGGGGVATTTKTGTA 359
consensus_2456#1      ------------------------------------------------------------
                                                                                  

consensus_2456#0      TGTAAWWAATGAGTCGCCGTTGTGTGAGGAGGSA 393
consensus_2456#1      ----------------------------------