cluster # 246

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Oryza sativa
cluster # 246 cluster # 246 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_246#0 length = 670 sequences # 1

consensus_246#1 length = 577 sequences # 1

consensusID : consensus_246#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 670
fasta sequence

                              [TTTTTTTTTTTTTTTTTTGCAGGAGAGCTAATTAATTAAGGGGGTGCCACTTAGCTAAGCTAAATTATACCCGATTGTTCAACTTATTCGATCTGCGCGTGTAGAGTACAAACTAAAGTTGCAATGCTCATGCGTGTTGGGGTTGGACTATATGCTTTTTAAAATTCTCCATGTAAAAATGTATATAATGCAAAAAAGTATAGCAGTAGTACGTACGTAGGAAATGTACATGTACTGATGTACGTACGTATTTGCTCCGTTTTGTTCCGTTGGGGGGGCTATAGCTTTCAATTCCTATCATGATGATGGATGACCTCGGCAAAGAATCGCCTTTGAGTCCCATCCCTGGAATCAATATTATGTCTCTTAAAAGCTCAGCTGATGCGGGGGGTTTTCTTGTCTTTGTACTTGCCATAGGCGTCATTTGTAGAGAAAAGACAACTTCTGAGAGGTCACTGGCACTTGTACAGTTGAACTACCTTGTTAGAAGAAATCATGTTTGACTTACAATCAAAAGGAGGAAGGAATTGCCATGCATTCACTATATACACATTGCAACTTTTGCAGCATCCAGGAGGATCAGATCATGTGNTGTGTGCAAGCCTTTTATAGTCACAATTGTAACTAGTGCGCAGAGATTGCCTTTTATCTTAATACAGTACGGTGTTTT]

[+] EMBL CA760627             [TTTTTTTTTTTTTTTTTTGCAGGAGAGCTAATTAATTAAGGGGGTGCCACTTAGCTAAGCTAAATTATACCCGATTGTTCAACTTATTCGATCTGCGCGTGTAGAGTACAAACTAAAGTTGCAATGCTCATGCGTGTTGGGGTTGGACTATATGCTTTTTAAAATTCTCCATGTAAAAATGTATATAATGCAAAAAAGTATAGCAGTAGTACGTACGTAGGAAATGTACATGTACTGATGTACGTACGTATTTGCTCCGTTTTGTTCCGTTGGGGGGGCTATAGCTTTCAATTCCTATCATGATGATGGATGACCTCGGCAAAGAATCGCCTTTGAGTCCCATCCCTGGAATCAATATTATGTCTCTTAAAAGCTCAGCTGATGCGGGGGGTTTTCTTGTCTTTGTACTTGCCATAGGCGTCATTTGTAGAGAAAAGACAACTTCTGAGAGGTCACTGGCACTTGTACAGTTGAACTACCTTGTTAGAAGAAATCATGTTTGACTTACAATCAAAAGGAGGAAGGAATTGCCATGCATTCACTATATACACATTGCAACTTTTGCAGCATCCAGGAGGATCAGATCATGTGNTGTGTGCAAGCCTTTTATAGTCACAATTGTAACTAGTGCGCAGAGATTGCCTTTTATCTTAATACAGTACGGTGTTTT]




>consensus_246#0
TTTTTTTTTTTTTTTTTTGCAGGAGAGCTAATTAATTAAGGGGGTGCCACTTAGCTAAGC
TAAATTATACCCGATTGTTCAACTTATTCGATCTGCGCGTGTAGAGTACAAACTAAAGTT
GCAATGCTCATGCGTGTTGGGGTTGGACTATATGCTTTTTAAAATTCTCCATGTAAAAAT
GTATATAATGCAAAAAAGTATAGCAGTAGTACGTACGTAGGAAATGTACATGTACTGATG
TACGTACGTATTTGCTCCGTTTTGTTCCGTTGGGGGGGCTATAGCTTTCAATTCCTATCA
TGATGATGGATGACCTCGGCAAAGAATCGCCTTTGAGTCCCATCCCTGGAATCAATATTA
TGTCTCTTAAAAGCTCAGCTGATGCGGGGGGTTTTCTTGTCTTTGTACTTGCCATAGGCG
TCATTTGTAGAGAAAAGACAACTTCTGAGAGGTCACTGGCACTTGTACAGTTGAACTACC
TTGTTAGAAGAAATCATGTTTGACTTACAATCAAAAGGAGGAAGGAATTGCCATGCATTC
ACTATATACACATTGCAACTTTTGCAGCATCCAGGAGGATCAGATCATGTGNTGTGTGCA
AGCCTTTTATAGTCACAATTGTAACTAGTGCGCAGAGATTGCCTTTTATCTTAATACAGT
ACGGTGTTTT

consensusID : consensus_246#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 577
fasta sequence

                              [AGTAGCTAGCGAGCAGCACACTGTAGAAGCTTGGCACTGGTGGTACTTGCTACAGAAGAAGAGAACTAAGAGAGAAAGAGAGCTAAGCTGCAGTGAGTTGCTGTCAAATTAAGTTGGATGGATGTGCATGGGTTGGAGCTGTGTCAGGTGAGAAGGGGCAGTATATATAAGACCTGGAGGTATTTGCTCCGTTTTGTTCCGTTGTGTGGGCTATAGCTTTCAATTCCTATCATGATGATGGATGACCTCGGCAAAGAATCGCCTTTGAGTCCCATCCCTGGAATCAATATTATGTCTCTTAAAAGCTCAGCTGATGCGGTGGGTTTTCTTGTCTTTGTACTTGCCATAGGCGTCATTTGTAGAGAAAAGACAACTCCTGAGAGGTCACTGGCACTTGTAAAGTTGAACTACCTTGTTAGAAGAAATCATGTTTGACTTACAATCAAAAGGAGGAAGGAATTGCCATGCATTCACTATATACACATTGCAACTTTTGCAGCATCCAGGAGGATCAGATCATGTGTGTGTGCAAGCCTTTATAAGTCACAATTGTAAATAGTGCGCAGAGATTGCCAGA]

[-] EMBL CB638922             [AGTAGCTAGCGAGCAGCACACTGTAGAAGCTTGGCACTGGTGGTACTTGCTACAGAAGAAGAGAACTAAGAGAGAAAGAGAGCTAAGCTGCAGTGAGTTGCTGTCAAATTAAGTTGGATGGATGTGCATGGGTTGGAGCTGTGTCAGGTGAGAAGGGGCAGTATATATAAGACCTGGAGGTATTTGCTCCGTTTTGTTCCGTTGTGTGGGCTATAGCTTTCAATTCCTATCATGATGATGGATGACCTCGGCAAAGAATCGCCTTTGAGTCCCATCCCTGGAATCAATATTATGTCTCTTAAAAGCTCAGCTGATGCGGTGGGTTTTCTTGTCTTTGTACTTGCCATAGGCGTCATTTGTAGAGAAAAGACAACTCCTGAGAGGTCACTGGCACTTGTAAAGTTGAACTACCTTGTTAGAAGAAATCATGTTTGACTTACAATCAAAAGGAGGAAGGAATTGCCATGCATTCACTATATACACATTGCAACTTTTGCAGCATCCAGGAGGATCAGATCATGTGTGTGTGCAAGCCTTTATAAGTCACAATTGTAAATAGTGCGCAGAGATTGCCAGA]




>consensus_246#1
AGTAGCTAGCGAGCAGCACACTGTAGAAGCTTGGCACTGGTGGTACTTGCTACAGAAGAA
GAGAACTAAGAGAGAAAGAGAGCTAAGCTGCAGTGAGTTGCTGTCAAATTAAGTTGGATG
GATGTGCATGGGTTGGAGCTGTGTCAGGTGAGAAGGGGCAGTATATATAAGACCTGGAGG
TATTTGCTCCGTTTTGTTCCGTTGTGTGGGCTATAGCTTTCAATTCCTATCATGATGATG
GATGACCTCGGCAAAGAATCGCCTTTGAGTCCCATCCCTGGAATCAATATTATGTCTCTT
AAAAGCTCAGCTGATGCGGTGGGTTTTCTTGTCTTTGTACTTGCCATAGGCGTCATTTGT
AGAGAAAAGACAACTCCTGAGAGGTCACTGGCACTTGTAAAGTTGAACTACCTTGTTAGA
AGAAATCATGTTTGACTTACAATCAAAAGGAGGAAGGAATTGCCATGCATTCACTATATA
CACATTGCAACTTTTGCAGCATCCAGGAGGATCAGATCATGTGTGTGTGCAAGCCTTTAT
AAGTCACAATTGTAAATAGTGCGCAGAGATTGCCAGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_246#0      TTTTTTTTTTTTTTTTTTGCAGGAGAGCTAATTAATTAAGGGGGTGCCACTTAGCTAAGC 60
consensus_246#1      -----------------------------------------AGTAGCTAGCGAGC--AGC 17
                                                               *  ** *   ***  ***

consensus_246#0      TAAATTATACCCGATTGTTCAACTTATTCGATCTGCGCGTGTAGAGTACAAACTAAAGTT 120
consensus_246#1      -ACACTGTAGAAGCTTGGC--ACTGGTGGTACTTGCTACAGAAGAAGA-GAACTAAGAGA 73
                      * * * **   * ***    ***  *   *  ***    * ***  *  ******    

consensus_246#0      GCAATGCTCATGCGTGTTGGGGTTGGACTATATGCTTTTTAAAATTCTCCATGTAAAAAT 180
consensus_246#1      GAAA-------GAGAGCTAAGCTGCAGTGAGTTGCTGTC--AAATTAAGT-TGGATGGAT 123
                     * **       * * * *  * *      *  **** *   *****     ** *   **

consensus_246#0      GTATATAATGCAAAAAAGTATAGCAGTAGTACGTACGTAGGAAATGTACATGTACTGATG 240
consensus_246#1      GTGCATGG--------GTTGGAGCTGTGTCAGGTGAGAAGGGGCAGTATATATA---AGA 172
                     **  **            *  *** **   * **  * ***    *** ** **   *  

consensus_246#0      TACGTACGTATTTGCTCCGTTTTGTTCCGTTGGGGGGGCTATAGCTTTCAATTCCTATCA 300
consensus_246#1      CCTGGAGGTATTTGCTCCGTTTTGTTCCGTTGTGTGGGCTATAGCTTTCAATTCCTATCA 232
                        * * ************************* * *************************

consensus_246#0      TGATGATGGATGACCTCGGCAAAGAATCGCCTTTGAGTCCCATCCCTGGAATCAATATTA 360
consensus_246#1      TGATGATGGATGACCTCGGCAAAGAATCGCCTTTGAGTCCCATCCCTGGAATCAATATTA 292
                     ************************************************************

consensus_246#0      TGTCTCTTAAAAGCTCAGCTGATGCGGGGGGTTTTCTTGTCTTTGTACTTGCCATAGGCG 420
consensus_246#1      TGTCTCTTAAAAGCTCAGCTGATGCGGTGGGTTTTCTTGTCTTTGTACTTGCCATAGGCG 352
                     *************************** ********************************

consensus_246#0      TCATTTGTAGAGAAAAGACAACTTCTGAGAGGTCACTGGCACTTGTACAGTTGAACTACC 480
consensus_246#1      TCATTTGTAGAGAAAAGACAACTCCTGAGAGGTCACTGGCACTTGTAAAGTTGAACTACC 412
                     *********************** *********************** ************

consensus_246#0      TTGTTAGAAGAAATCATGTTTGACTTACAATCAAAAGGAGGAAGGAATTGCCATGCATTC 540
consensus_246#1      TTGTTAGAAGAAATCATGTTTGACTTACAATCAAAAGGAGGAAGGAATTGCCATGCATTC 472
                     ************************************************************

consensus_246#0      ACTATATACACATTGCAACTTTTGCAGCATCCAGGAGGATCAGATCATGTGNTGTGTGCA 600
consensus_246#1      ACTATATACACATTGCAACTTTTGCAGCATCCAGGAGGATCAGATCATGTGT-GTGTGCA 531
                     ***************************************************  *******

consensus_246#0      AGCCTTTTATAGTCACAATTGTAACTAGTGCGCAGAGATTGCCTTTTATCTTAATACAGT 660
consensus_246#1      AGCCTTTATAAGTCACAATTGTAAATAGTGCGCAGAGATTGCCAGA-------------- 577
                     *******   ************** ******************                 

consensus_246#0      ACGGTGTTTT 670
consensus_246#1      ----------