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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2470#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1697 fasta sequence
[AGCACGAGCAGAGCGTCTTGTGCGCGCGCATCTGCATCTGTATGCGGCGCCGGCGATCTCATCAATTCTGCGCTGCCGGATCGAGATCGAGCTAGGCCAATAGGCCATAGCCAAACCATGGCACTCATGCTCGCGGCCGCGGCGAGGGAGTGGACGCCGTGCGCGGCGATGGTGGCGGCGCAGTGCATCTACGCGGCCATGACGCTCTGGGCCAAGGCCATGTTCGGCCGTGGCGTCAGCCCCGTGATCTTCGTCGTCTACCGCCAGGCCATCGGCACCCTCGTCCTCGTCCCCATCACCCTCCTCGCCAACAGGTATAGCAATAATCATTGATATATACACTTAAATTGTTCAGTTTCGATCATGTTTAGCTGATCATCAGTCAGATCATCATCACCCTCTTCTGTTCAATTGAACCATTGATACACTTAAATAGTTAGTTAAATTGATCAATTTGGTCATGTCTAGCTGGTCAGTAGTCATCACCCTCCTCTGTTCGATTGATCATGTTTGTGTGCTTGTGAGAAATCCAGGGCAAAAGTGAAGGAGACGAGGAGCCTTGGGACGACAGGCTTGTTCTTGGTGTTTGTGACGGCTTTGCTCGGGCACGGCGACGGTAAACCAGAACCTGACCTACCAAGGGCTGCATCTGGGCTCGTCATCCATGGCGACGGCCATGACCAATTTGATACCCGCGATAACTTTCTTGATGGCAGCGTCAGCAGGGCAGGAAAGAGTTAACGTCAGAGAACGGGGCACCATGGCCAAGATATCCGGAACCATAGTCTGCGTGGGAGGAGCCACGGCCATGGCGTTCTTCAAAGGCCCAAAGCTTCTGAACTACACGCTTGGTGACCTGAACATGCTCCTCCACCCGCCGGCGATCAGCAAGTGGGTTCTCGGCGCGCTCTGCCTCGTCGTCAGCAGCTCATGCTGGTCACTCCGGCTCATACTGCAGGTGCCAATCTGCAAATTTTATGTGGATCCTCTGTCTCTGTCGGCATGGACCTGCTTCTTCTCGACGCTGCAATGCGCAGCGCTCGCCGTCTTCCTGGTCCCGGACGCGAACGCATGGAAGATCCACTCGCTCTTCGAGCTCTCGAGCTACGCCTTCGCCGGAGTGTTTGGGTCAGGCGTCTGCTTCTACCTGCAATCATGGTGCATCTCGGTGAGGGGGCCCCTCTACTCGGCCATGTTCACCCCTGTCTGCACCGTGGTCACCACCATCGTCGCCGCCGCCGTTCTCCAGGAGGAGCTGCACATTGGAAGCTTGATGGGAGCAGCTGCTGTGATCACCGGGTTGTACGTCGTCCTGTGGGGAAAAGCGGACGACATGAAGCGGGGCAGCGAGCCGGCGACGGCGGCGGCGGCGGCGAAGCCATGCACGGATTCGTGTCGCGACGTCGAGCGCACCGCCGCTGAGGAGCCTCTCCTGCTGGCAGACGCCGTCTCAAGCGAGCAGCTCTGATTGTTTACACATTACGACAACACTAGACTATTTTGTATGATTAGTAAAAACGGATCGACAGATCTGTGCAGTTTTGCTGTTTATGACTAGTTTACCTGTTGTCTGTTCCGACATTCGAGCGGCCAGCAAATGGCCTGATTTGTTAAAGATGTGGGGCCGAATTGCCGATGCCATCATGAAGTATGATTGATACTCCCTCCGTCTCATTTTAAGTGTAACCATAAATTTT]
[+] EMBL AK105859 [AGCACGAGCAGAGCGTCTTGTGCGCGCGCATCTGCATCTGTATGCGGCGCCGGCGATCTCATCAATTCTGCGCTGCCGGATCGAGATCGAGCTAGGCCAATAGGCCATAGCCAAACCATGGCACTCATGCTCGCGGCCGCGGCGAGGGAGTGGACGCCGTGCGCGGCGATGGTGGCGGCGCAGTGCATCTACGCGGCCATGACGCTCTGGGCCAAGGCCATGTTCGGCCGTGGCGTCAGCCCCGTGATCTTCGTCGTCTACCGCCAGGCCATCGGCACCCTCGTCCTCGTCCCCATCACCCTCCTCGCCAACAGGTATAGCAATAATCATTGATATATACACTTAAATTGTTCAGTTTCGATCATGTTTAGCTGATCATCAGTCAGATCATCATCACCCTCTTCTGTTCAATTGAACCATTGATACACTTAAATAGTTAGTTAAATTGATCAATTTGGTCATGTCTAGCTGGTCAGTAGTCATCACCCTCCTCTGTTCGATTGATCATGTTTGTGTGCTTGTGAGAAATCCAGGGCAAAAGTGAAGGAGACGAGGAGCCTTGGGACGACAGGCTTGTTCTTGGTGTTTGTGACGGCTTTGCTCGGGCACGGCGACGGTAAACCAGAACCTGACCTACCAAGGGCTGCATCTGGGCTCGTCATCCATGGCGACGGCCATGACCAATTTGATACCCGCGATAACTTTCTTGATGGCAGCGTCAGCAGGGCAGGAAAGAGTTAACGTCAGAGAACGGGGCACCATGGCCAAGATATCCGGAACCATAGTCTGCGTGGGAGGAGCCACGGCCATGGCGTTCTTCAAAGGCCCAAAGCTTCTGAACTACACGCTTGGTGACCTGAACATGCTCCTCCACCCGCCGGCGATCAGCAAGTGGGTTCTCGGCGCGCTCTGCCTCGTCGTCAGCAGCTCATGCTGGTCACTCCGGCTCATACTGCAGGTGCCAATCTGCAAATTTTATGTGGATCCTCTGTCTCTGTCGGCATGGACCTGCTTCTTCTCGACGCTGCAATGCGCAGCGCTCGCCGTCTTCCTGGTCCCGGACGCGAACGCATGGAAGATCCACTCGCTCTTCGAGCTCTCGAGCTACGCCTTCGCCGGAGTGTTTGGGTCAGGCGTCTGCTTCTACCTGCAATCATGGTGCATCTCGGTGAGGGGGCCCCTCTACTCGGCCATGTTCACCCCTGTCTGCACCGTGGTCACCACCATCGTCGCCGCCGCCGTTCTCCAGGAGGAGCTGCACATTGGAAGCTTGATGGGAGCAGCTGCTGTGATCACCGGGTTGTACGTCGTCCTGTGGGGAAAAGCGGACGACATGAAGCGGGGCAGCGAGCCGGCGACGGCGGCGGCGGCGGCGAAGCCATGCACGGATTCGTGTCGCGACGTCGAGCGCACCGCCGCTGAGGAGCCTCTCCTGCTGGCAGACGCCGTCTCAAGCGAGCAGCTCTGATTGTTTACACATTACGACAACACTAGACTATTTTGTATGATTAGTAAAAACGGATCGACAGATCTGTGCAGTTTTGCTGTTTATGACTAGTTTACCTGTTGTCTGTTCCGACATTCGAGCGGCCAGCAAATGGCCTGATTTGTTAAAGATGTGGGGCCGAATTGCCGATGCCATCATGAAGTATGATTGATACTCCCTCCGTCTCATTTTAAGTGTAACCATAAATTTT]
consensusID : consensus_2470#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1186 fasta sequence
[GAGCACGAGCAGAGCGTCTTGTGCGCGCGCATCTGCATCTGTATGCGGCGCCGGCGATCTCATCAATTCTGCGCTGCCGGATCGAGATCGAGCTAGGCCAATAGGCCATAGCCAAACCATGGCACTCATGCTCGCGGCCGCGGCGAGGGAGTGGACGCCGTGCGCGGCGATGGTGGCGGCGCAGTGCATCTACGCGGCCATGACGCTCTGGGCCAAGGCCATGTTCGGCCGTGGCGTCAGCCCCGTGATCTTCGTCGTCTACCGCCAGGCCATCGGCACCCTCGTCCTCGTCCCCATCACCCTCCTCGCCAACAGGGCAAAAGTGAAGGAGACGAGGAGCCTTGGGACGACAGGCTTGTTCTTGGTGTTTGTGACGGTTTTGCTCGGGCACGGCGACGGTAAACCAGAACCTGACCTACCAAGGGCTGCATCTGGGCTCGTCATCCATGGCGACGGCCATGACCAATTTGATACCCGCGATAACTTTCTTGATGGCAGCGTCAGCAGGGCAGGAAAGAGTTAACGTCAGAGAACGGGGCACCATGGCCAAGATATCCGGAACCATAGTCTGCGTGGGAGGAGCCACGGCCATGGCGTTCTTCAAAGGCCCAAAGCTTCTGAACTACACGCTTGGTGACCTGAACATGCTCCTCCACTCGCCGGCGATCAGCAAGTGGGTTCTCGGCGCGCTCTGCCTCGTCGTCAGCAGCTCATGCTGGTCACTCCGGCTCATACTGCAGGTGCCAATCTGCAAATTTTATGTGGATCCTCTGTCTCTGTCGGCATGGACCTGCTTCTTCTCGACGCTGCAATGCGCAGCGCTCGCCGTCTTCCTGGTCCCGGACGCGAACGCATGGAAGATCCACTCGCTCTTCGAGCTCTCGAGCTACGCCTTCGCCGTGAGTTCAGAATTGCCATGCGTTTTGTTGTGTGTGTGCCCGGACAGCAGAATGGACAAGTTCTGGTTTTCTGGATCTGAACTGAACAGAGCTGGACATAAATAATGCAGGGAGTGTTTGGGTCAGGCGTCTGCTTCTACCTGCAATCATGGTGCATCTCGGTGAGGGGGCCCCTCTACTCGGCCATGTTCACCCCTGTCTGCACCGTGGTCACCACCATCGTCGCCGCCGCCGTTCTCCAGGAGGAGCTGCACATTGGAAGGCACGCTTCTTCTCTTCTCTCGACG]
[+] EMBL AK068810 [GAGCACGAGCAGAGCGTCTTGTGCGCGCGCATCTGCATCTGTATGCGGCGCCGGCGATCTCATCAATTCTGCGCTGCCGGATCGAGATCGAGCTAGGCCAATAGGCCATAGCCAAACCATGGCACTCATGCTCGCGGCCGCGGCGAGGGAGTGGACGCCGTGCGCGGCGATGGTGGCGGCGCAGTGCATCTACGCGGCCATGACGCTCTGGGCCAAGGCCATGTTCGGCCGTGGCGTCAGCCCCGTGATCTTCGTCGTCTACCGCCAGGCCATCGGCACCCTCGTCCTCGTCCCCATCACCCTCCTCGCCAACAGGGCAAAAGTGAAGGAGACGAGGAGCCTTGGGACGACAGGCTTGTTCTTGGTGTTTGTGACGGTTTTGCTCGGGCACGGCGACGGTAAACCAGAACCTGACCTACCAAGGGCTGCATCTGGGCTCGTCATCCATGGCGACGGCCATGACCAATTTGATACCCGCGATAACTTTCTTGATGGCAGCGTCAGCAGGGCAGGAAAGAGTTAACGTCAGAGAACGGGGCACCATGGCCAAGATATCCGGAACCATAGTCTGCGTGGGAGGAGCCACGGCCATGGCGTTCTTCAAAGGCCCAAAGCTTCTGAACTACACGCTTGGTGACCTGAACATGCTCCTCCACTCGCCGGCGATCAGCAAGTGGGTTCTCGGCGCGCTCTGCCTCGTCGTCAGCAGCTCATGCTGGTCACTCCGGCTCATACTGCAGGTGCCAATCTGCAAATTTTATGTGGATCCTCTGTCTCTGTCGGCATGGACCTGCTTCTTCTCGACGCTGCAATGCGCAGCGCTCGCCGTCTTCCTGGTCCCGGACGCGAACGCATGGAAGATCCACTCGCTCTTCGAGCTCTCGAGCTACGCCTTCGCCGTGAGTTCAGAATTGCCATGCGTTTTGTTGTGTGTGTGCCCGGACAGCAGAATGGACAAGTTCTGGTTTTCTGGATCTGAACTGAACAGAGCTGGACATAAATAATGCAGGGAGTGTTTGGGTCAGGCGTCTGCTTCTACCTGCAATCATGGTGCATCTCGGTGAGGGGGCCCCTCTACTCGGCCATGTTCACCCCTGTCTGCACCGTGGTCACCACCATCGTCGCCGCCGCCGTTCTCCAGGAGGAGCTGCACATTGGAAGGCACGCTTCTTCTCTTCTCTCGACG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2470#0 -AGCACGAGCAGAGCGTCTTGTGCGCGCGCATCTGCATCTGTATGCGGCGCCGGCGATCT 59
consensus_2470#1 GAGCACGAGCAGAGCGTCTTGTGCGCGCGCATCTGCATCTGTATGCGGCGCCGGCGATCT 60
***********************************************************
consensus_2470#0 CATCAATTCTGCGCTGCCGGATCGAGATCGAGCTAGGCCAATAGGCCATAGCCAAACCAT 119
consensus_2470#1 CATCAATTCTGCGCTGCCGGATCGAGATCGAGCTAGGCCAATAGGCCATAGCCAAACCAT 120
************************************************************
consensus_2470#0 GGCACTCATGCTCGCGGCCGCGGCGAGGGAGTGGACGCCGTGCGCGGCGATGGTGGCGGC 179
consensus_2470#1 GGCACTCATGCTCGCGGCCGCGGCGAGGGAGTGGACGCCGTGCGCGGCGATGGTGGCGGC 180
************************************************************
consensus_2470#0 GCAGTGCATCTACGCGGCCATGACGCTCTGGGCCAAGGCCATGTTCGGCCGTGGCGTCAG 239
consensus_2470#1 GCAGTGCATCTACGCGGCCATGACGCTCTGGGCCAAGGCCATGTTCGGCCGTGGCGTCAG 240
************************************************************
consensus_2470#0 CCCCGTGATCTTCGTCGTCTACCGCCAGGCCATCGGCACCCTCGTCCTCGTCCCCATCAC 299
consensus_2470#1 CCCCGTGATCTTCGTCGTCTACCGCCAGGCCATCGGCACCCTCGTCCTCGTCCCCATCAC 300
************************************************************
consensus_2470#0 CCTCCTCGCCAACAGGTATAGCAATAATCATTGATATATACACTTAAATTGTTCAGTTTC 359
consensus_2470#1 CCTCCTCGCCAACAGG-------------------------------------------- 316
****************
consensus_2470#0 GATCATGTTTAGCTGATCATCAGTCAGATCATCATCACCCTCTTCTGTTCAATTGAACCA 419
consensus_2470#1 ------------------------------------------------------------
consensus_2470#0 TTGATACACTTAAATAGTTAGTTAAATTGATCAATTTGGTCATGTCTAGCTGGTCAGTAG 479
consensus_2470#1 ------------------------------------------------------------
consensus_2470#0 TCATCACCCTCCTCTGTTCGATTGATCATGTTTGTGTGCTTGTGAGAAATCCAGGGCAAA 539
consensus_2470#1 -------------------------------------------------------GCAAA 321
*****
consensus_2470#0 AGTGAAGGAGACGAGGAGCCTTGGGACGACAGGCTTGTTCTTGGTGTTTGTGACGGCTTT 599
consensus_2470#1 AGTGAAGGAGACGAGGAGCCTTGGGACGACAGGCTTGTTCTTGGTGTTTGTGACGGTTTT 381
******************************************************** ***
consensus_2470#0 GCTCGGGCACGGCGACGGTAAACCAGAACCTGACCTACCAAGGGCTGCATCTGGGCTCGT 659
consensus_2470#1 GCTCGGGCACGGCGACGGTAAACCAGAACCTGACCTACCAAGGGCTGCATCTGGGCTCGT 441
************************************************************
consensus_2470#0 CATCCATGGCGACGGCCATGACCAATTTGATACCCGCGATAACTTTCTTGATGGCAGCGT 719
consensus_2470#1 CATCCATGGCGACGGCCATGACCAATTTGATACCCGCGATAACTTTCTTGATGGCAGCGT 501
************************************************************
consensus_2470#0 CAGCAGGGCAGGAAAGAGTTAACGTCAGAGAACGGGGCACCATGGCCAAGATATCCGGAA 779
consensus_2470#1 CAGCAGGGCAGGAAAGAGTTAACGTCAGAGAACGGGGCACCATGGCCAAGATATCCGGAA 561
************************************************************
consensus_2470#0 CCATAGTCTGCGTGGGAGGAGCCACGGCCATGGCGTTCTTCAAAGGCCCAAAGCTTCTGA 839
consensus_2470#1 CCATAGTCTGCGTGGGAGGAGCCACGGCCATGGCGTTCTTCAAAGGCCCAAAGCTTCTGA 621
************************************************************
consensus_2470#0 ACTACACGCTTGGTGACCTGAACATGCTCCTCCACCCGCCGGCGATCAGCAAGTGGGTTC 899
consensus_2470#1 ACTACACGCTTGGTGACCTGAACATGCTCCTCCACTCGCCGGCGATCAGCAAGTGGGTTC 681
*********************************** ************************
consensus_2470#0 TCGGCGCGCTCTGCCTCGTCGTCAGCAGCTCATGCTGGTCACTCCGGCTCATACTGCAGG 959
consensus_2470#1 TCGGCGCGCTCTGCCTCGTCGTCAGCAGCTCATGCTGGTCACTCCGGCTCATACTGCAGG 741
************************************************************
consensus_2470#0 TGCCAATCTGCAAATTTTATGTGGATCCTCTGTCTCTGTCGGCATGGACCTGCTTCTTCT 1019
consensus_2470#1 TGCCAATCTGCAAATTTTATGTGGATCCTCTGTCTCTGTCGGCATGGACCTGCTTCTTCT 801
************************************************************
consensus_2470#0 CGACGCTGCAATGCGCAGCGCTCGCCGTCTTCCTGGTCCCGGACGCGAACGCATGGAAGA 1079
consensus_2470#1 CGACGCTGCAATGCGCAGCGCTCGCCGTCTTCCTGGTCCCGGACGCGAACGCATGGAAGA 861
************************************************************
consensus_2470#0 TCCACTCGCTCTTCGAGCTCTCGAGCTACGCCTTCGCCGGAGTGTTTGGGT---CAGGCG 1136
consensus_2470#1 TCCACTCGCTCTTCGAGCTCTCGAGCTACGCCTTCGCCGTGAGTTCAGAATTGCCATGCG 921
*************************************** * * * ** ***
consensus_2470#0 TCTGCTTCTACCTGCAATCATGGTGCATCTCGGTGAGGGGGCCCCTCTACTCGGCCATGT 1196
consensus_2470#1 TTTTGTTGTGTGTGTGCCCGGACAGCAGAATGGACAAGTT-CTGGTTTTCTGGATCTGAA 980
* * ** * ** * *** ** * * * * * ** * *
consensus_2470#0 TCACCCCTGTCTGCACCGTGGTCACCACCATCGTCGCCGCCGCCGTTCTCCAGGAGGAGC 1256
consensus_2470#1 CTGAACAGAGCTGGACATAAATAATGCAGGGAGTGTTTGGGTCAGGCGTCTGCTTCTACC 1040
* *** ** * * ** * * * ** * *
consensus_2470#0 TGCA--CATTG-GAAGCTTGATGGGAGCAGCTGCTGTGATCACCGGGTTGTACGTCGTCC 1313
consensus_2470#1 TGCAATCATGGTGCATCTCGGTGAGGG-GGCCCCTCTACTCGGCCA--TGTTCACCCCTG 1097
**** *** * * * ** * ** * * ** ** * ** * *** * *
consensus_2470#0 TGTGGGGAAAAGCGGACGACATGAAGCGGGGCAGCGAGCCGGCGACGGCGGCGGCGGCGG 1373
consensus_2470#1 TCTGCACCGTGGTCACCACCATCGT-CGCCGCCGCCGTTCTCCAGGAGGAGCTGCACATT 1156
* ** * * *** ** ** ** * * * ** **
consensus_2470#0 CGAAGCCATGCACGGATTCGTGTCGCGACGTCGAGCGCACCGCCGCTGAGGAGCCTCTCC 1433
consensus_2470#1 GGAAGGCACGCTTCTTCTCTTCTCTCGACG------------------------------ 1186
**** ** ** ** * ** *****
consensus_2470#0 TGCTGGCAGACGCCGTCTCAAGCGAGCAGCTCTGATTGTTTACACATTACGACAACACTA 1493
consensus_2470#1 ------------------------------------------------------------
consensus_2470#0 GACTATTTTGTATGATTAGTAAAAACGGATCGACAGATCTGTGCAGTTTTGCTGTTTATG 1553
consensus_2470#1 ------------------------------------------------------------
consensus_2470#0 ACTAGTTTACCTGTTGTCTGTTCCGACATTCGAGCGGCCAGCAAATGGCCTGATTTGTTA 1613
consensus_2470#1 ------------------------------------------------------------
consensus_2470#0 AAGATGTGGGGCCGAATTGCCGATGCCATCATGAAGTATGATTGATACTCCCTCCGTCTC 1673
consensus_2470#1 ------------------------------------------------------------
consensus_2470#0 ATTTTAAGTGTAACCATAAATTTT 1697
consensus_2470#1 ------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||