cluster # 2475

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Oryza sativa
cluster # 2475 cluster # 2475 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2475#0 length = 739 sequences # 1

consensus_2475#1 length = 623 sequences # 1

consensusID : consensus_2475#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 739
fasta sequence

                              [CAGCTAACTAAGATTTACAAATACATGTGCATTTAACCCCATTTACATATAACAATGTTGGTACAAAGAATTATCTACAACAACTGCACGCATGAGTGCAAAAGTGATCATCTAGCACTCCTATGTTCTAGCCGGCTTCACCATCCGCATCTTCATCAGGACGCCATTCTAGTAAAGCTTGGTTCTGTGGCTTCTCATTGGAAGATCTAACATCAACTAGTCCTTCGATAGAGCAGTTAGACAGCTCTAACAACATTGCGCAAAACCCGCAGGAGCAAGATCTGCAAACTGTCCCATGGTTCAACGCAGAGTTAAACCTCCCTAAAGAATCCTTCAATTTCTTTATCTCCATAGATTGCTTCTGAGCTAGTTCATGTGATTCCTGCAGTTTCCTCAGGGCTCCACTCAATTTTCTCTGCTCTTTGGAAACCTGAGCCTCTAGTTCCTGGATTTGTTGGATAGCTGCCTGCTCAATGCAAGACCGACGCTTGTATTCTTCCTCAAGCATGCCAGTTATTTGGTACCTTAGTTCAGCCATTTCTTGGGTGAGATCTTCTGCATCCTCCTTTGCCTTCAGTTTTTGTTCTCGAAGCTCTTCCTTGAGCTGCTCAATCAGTAGTTCAGATTCTTCACTTCGCTTTGCCATATTTTCAAGTATTGCACCGCCCCTCTCATAGTATTGACCATCAATCTTCTCAATTGTTTTGTCAACTTGCTCATCAGATGTTAAAGCAGTGGC]

[+] EMBL CB667445             [CAGCTAACTAAGATTTACAAATACATGTGCATTTAACCCCATTTACATATAACAATGTTGGTACAAAGAATTATCTACAACAACTGCACGCATGAGTGCAAAAGTGATCATCTAGCACTCCTATGTTCTAGCCGGCTTCACCATCCGCATCTTCATCAGGACGCCATTCTAGTAAAGCTTGGTTCTGTGGCTTCTCATTGGAAGATCTAACATCAACTAGTCCTTCGATAGAGCAGTTAGACAGCTCTAACAACATTGCGCAAAACCCGCAGGAGCAAGATCTGCAAACTGTCCCATGGTTCAACGCAGAGTTAAACCTCCCTAAAGAATCCTTCAATTTCTTTATCTCCATAGATTGCTTCTGAGCTAGTTCATGTGATTCCTGCAGTTTCCTCAGGGCTCCACTCAATTTTCTCTGCTCTTTGGAAACCTGAGCCTCTAGTTCCTGGATTTGTTGGATAGCTGCCTGCTCAATGCAAGACCGACGCTTGTATTCTTCCTCAAGCATGCCAGTTATTTGGTACCTTAGTTCAGCCATTTCTTGGGTGAGATCTTCTGCATCCTCCTTTGCCTTCAGTTTTTGTTCTCGAAGCTCTTCCTTGAGCTGCTCAATCAGTAGTTCAGATTCTTCACTTCGCTTTGCCATATTTTCAAGTATTGCACCGCCCCTCTCATAGTATTGACCATCAATCTTCTCAATTGTTTTGTCAACTTGCTCATCAGATGTTAAAGCAGTGGC]




>consensus_2475#0
CAGCTAACTAAGATTTACAAATACATGTGCATTTAACCCCATTTACATATAACAATGTTG
GTACAAAGAATTATCTACAACAACTGCACGCATGAGTGCAAAAGTGATCATCTAGCACTC
CTATGTTCTAGCCGGCTTCACCATCCGCATCTTCATCAGGACGCCATTCTAGTAAAGCTT
GGTTCTGTGGCTTCTCATTGGAAGATCTAACATCAACTAGTCCTTCGATAGAGCAGTTAG
ACAGCTCTAACAACATTGCGCAAAACCCGCAGGAGCAAGATCTGCAAACTGTCCCATGGT
TCAACGCAGAGTTAAACCTCCCTAAAGAATCCTTCAATTTCTTTATCTCCATAGATTGCT
TCTGAGCTAGTTCATGTGATTCCTGCAGTTTCCTCAGGGCTCCACTCAATTTTCTCTGCT
CTTTGGAAACCTGAGCCTCTAGTTCCTGGATTTGTTGGATAGCTGCCTGCTCAATGCAAG
ACCGACGCTTGTATTCTTCCTCAAGCATGCCAGTTATTTGGTACCTTAGTTCAGCCATTT
CTTGGGTGAGATCTTCTGCATCCTCCTTTGCCTTCAGTTTTTGTTCTCGAAGCTCTTCCT
TGAGCTGCTCAATCAGTAGTTCAGATTCTTCACTTCGCTTTGCCATATTTTCAAGTATTG
CACCGCCCCTCTCATAGTATTGACCATCAATCTTCTCAATTGTTTTGTCAACTTGCTCAT
CAGATGTTAAAGCAGTGGC

consensusID : consensus_2475#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 623
fasta sequence

                              [TTTACAAATATCAATTTTGATACAAAAAATTATTTAAAAAAAGTGGACGCATGAAATGCAAAAGTGATCATCTAGCACTCCTATGTTCTATCCGGTTTCACCATCCGCATCTTCATCAAGACGCCATTCTAATAAAACTTGGTTCTGTGGCTTCTCATTGAAAAATCTAACATCAACTAGTCCTTCAATAAAACAATTAAACAGCTCTAACAACATTGCGCAAAACCCGCAAGAACAAAATCTGCAAACTGTCCCATGGTTCAACGCAAAATTAAACCTCCCTAAAAAATCCTTCAATTTCTTTATCTCCATAAATTGCTTCTGAACTAGTTCATGTGATTCCTGCAATTTCCTCAGGGCTCCACTCAATTTTCTCTGCTCTTTGAAAACCTGAACCTCTAATTCCTGGATTTGTTGGATAACTGCCTGCTCAATGCAAAACCAACGCTTGTATTCTTCCTCAAGCATGCCAATTATTTGGTACCTTATTTCAGCCATTTCTTGGGTGAAATCTTCTGCATCCTCCTTTGCCTTCAATTTTTGTTCTCAAAGCTCTTCCTTGAGCTGCTCAATCAGTAATTCAAATTCTTCACTTCGCTTTGCCATATTTTAAAATATTGCAC]

[+] EMBL CB667444             [TTTACAAATATCAATTTTGATACAAAAAATTATTTAAAAAAAGTGGACGCATGAAATGCAAAAGTGATCATCTAGCACTCCTATGTTCTATCCGGTTTCACCATCCGCATCTTCATCAAGACGCCATTCTAATAAAACTTGGTTCTGTGGCTTCTCATTGAAAAATCTAACATCAACTAGTCCTTCAATAAAACAATTAAACAGCTCTAACAACATTGCGCAAAACCCGCAAGAACAAAATCTGCAAACTGTCCCATGGTTCAACGCAAAATTAAACCTCCCTAAAAAATCCTTCAATTTCTTTATCTCCATAAATTGCTTCTGAACTAGTTCATGTGATTCCTGCAATTTCCTCAGGGCTCCACTCAATTTTCTCTGCTCTTTGAAAACCTGAACCTCTAATTCCTGGATTTGTTGGATAACTGCCTGCTCAATGCAAAACCAACGCTTGTATTCTTCCTCAAGCATGCCAATTATTTGGTACCTTATTTCAGCCATTTCTTGGGTGAAATCTTCTGCATCCTCCTTTGCCTTCAATTTTTGTTCTCAAAGCTCTTCCTTGAGCTGCTCAATCAGTAATTCAAATTCTTCACTTCGCTTTGCCATATTTTAAAATATTGCAC]




>consensus_2475#1
TTTACAAATATCAATTTTGATACAAAAAATTATTTAAAAAAAGTGGACGCATGAAATGCA
AAAGTGATCATCTAGCACTCCTATGTTCTATCCGGTTTCACCATCCGCATCTTCATCAAG
ACGCCATTCTAATAAAACTTGGTTCTGTGGCTTCTCATTGAAAAATCTAACATCAACTAG
TCCTTCAATAAAACAATTAAACAGCTCTAACAACATTGCGCAAAACCCGCAAGAACAAAA
TCTGCAAACTGTCCCATGGTTCAACGCAAAATTAAACCTCCCTAAAAAATCCTTCAATTT
CTTTATCTCCATAAATTGCTTCTGAACTAGTTCATGTGATTCCTGCAATTTCCTCAGGGC
TCCACTCAATTTTCTCTGCTCTTTGAAAACCTGAACCTCTAATTCCTGGATTTGTTGGAT
AACTGCCTGCTCAATGCAAAACCAACGCTTGTATTCTTCCTCAAGCATGCCAATTATTTG
GTACCTTATTTCAGCCATTTCTTGGGTGAAATCTTCTGCATCCTCCTTTGCCTTCAATTT
TTGTTCTCAAAGCTCTTCCTTGAGCTGCTCAATCAGTAATTCAAATTCTTCACTTCGCTT
TGCCATATTTTAAAATATTGCAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2475#0      CAGCTAACTAAGATTTACAAATACATGTGCATTTAACCCCATTTACATATAACAATGTTG 60
consensus_2475#1      -----------------------------------------TTTACAAATATCAATTTTG 19
                                                               ****** *** **** ***

consensus_2475#0      GTACAAAGAATTATCTACAACAACTGCACGCATGAG-TGCAAAAGTGATCATCTAGCACT 119
consensus_2475#1      ATACAAAAAATTATTTAAAAAAAGTGGACGCATGAAATGCAAAAGTGATCATCTAGCACT 79
                       ****** ****** ** ** ** ** ********  ***********************

consensus_2475#0      CCTATGTTCTAGCCGGCTTCACCATCCGCATCTTCATCAGGACGCCATTCTAGTAAAGCT 179
consensus_2475#1      CCTATGTTCTATCCGGTTTCACCATCCGCATCTTCATCAAGACGCCATTCTAATAAAACT 139
                      *********** **** ********************** ************ **** **

consensus_2475#0      TGGTTCTGTGGCTTCTCATTGGAAGATCTAACATCAACTAGTCCTTCGATAGAGCAGTTA 239
consensus_2475#1      TGGTTCTGTGGCTTCTCATTGAAAAATCTAACATCAACTAGTCCTTCAATAAAACAATTA 199
                      ********************* ** ********************** *** * ** ***

consensus_2475#0      GACAGCTCTAACAACATTGCGCAAAACCCGCAGGAGCAAGATCTGCAAACTGTCCCATGG 299
consensus_2475#1      AACAGCTCTAACAACATTGCGCAAAACCCGCAAGAACAAAATCTGCAAACTGTCCCATGG 259
                       ******************************* ** *** ********************

consensus_2475#0      TTCAACGCAGAGTTAAACCTCCCTAAAGAATCCTTCAATTTCTTTATCTCCATAGATTGC 359
consensus_2475#1      TTCAACGCAAAATTAAACCTCCCTAAAAAATCCTTCAATTTCTTTATCTCCATAAATTGC 319
                      ********* * *************** ************************** *****

consensus_2475#0      TTCTGAGCTAGTTCATGTGATTCCTGCAGTTTCCTCAGGGCTCCACTCAATTTTCTCTGC 419
consensus_2475#1      TTCTGAACTAGTTCATGTGATTCCTGCAATTTCCTCAGGGCTCCACTCAATTTTCTCTGC 379
                      ****** ********************* *******************************

consensus_2475#0      TCTTTGGAAACCTGAGCCTCTAGTTCCTGGATTTGTTGGATAGCTGCCTGCTCAATGCAA 479
consensus_2475#1      TCTTTGAAAACCTGAACCTCTAATTCCTGGATTTGTTGGATAACTGCCTGCTCAATGCAA 439
                      ****** ******** ****** ******************* *****************

consensus_2475#0      GACCGACGCTTGTATTCTTCCTCAAGCATGCCAGTTATTTGGTACCTTAGTTCAGCCATT 539
consensus_2475#1      AACCAACGCTTGTATTCTTCCTCAAGCATGCCAATTATTTGGTACCTTATTTCAGCCATT 499
                       *** **************************** *************** **********

consensus_2475#0      TCTTGGGTGAGATCTTCTGCATCCTCCTTTGCCTTCAGTTTTTGTTCTCGAAGCTCTTCC 599
consensus_2475#1      TCTTGGGTGAAATCTTCTGCATCCTCCTTTGCCTTCAATTTTTGTTCTCAAAGCTCTTCC 559
                      ********** ************************** *********** **********

consensus_2475#0      TTGAGCTGCTCAATCAGTAGTTCAGATTCTTCACTTCGCTTTGCCATATTTTCAAGTATT 659
consensus_2475#1      TTGAGCTGCTCAATCAGTAATTCAAATTCTTCACTTCGCTTTGCCATATTTTAAAATATT 619
                      ******************* **** *************************** ** ****

consensus_2475#0      GCACCGCCCCTCTCATAGTATTGACCATCAATCTTCTCAATTGTTTTGTCAACTTGCTCA 719
consensus_2475#1      GCAC-------------------------------------------------------- 623
                      ****                                                        

consensus_2475#0      TCAGATGTTAAAGCAGTGGC 739
consensus_2475#1      --------------------