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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2476#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 810 fasta sequence
[AAGGTTCCATTTAAGGACCGACACTCAGGCTCAAGAAACCACAGAGGAAATTATAACACTGACAAGGGTGACCATAATGATAAAGAAGGAAATTGGATAAATTCAAAACAACGAAATCCTGGCCGCAGCTATGGACGTAGCCACTCAGAGAGGTCTGGCATACGATCGGATAGACAAGCAGCAGATGAAAACCAGTATGATAGGCAGCGGCGATCTTATAGAAATGATTCATACAGGCATGAGACAGGCGCCCAATCTTCTGGATCAACAAACTATATACGCAGACCAGGGAACATGACACATGGGGATCCATCACCATCTGCTTCAAATGGTATCGGTGCCCTTTCTGGGTCTTCAGCTCCATATTTCATGTACTACTCATGTGAACCAGGCACAAATCACGGTTCTTCATCTGAACCACTTGAATTTGGTTCACTTGGGCCAGTTCCTACAGCTGATGGTGGTGACATGCCACGACCCACTCGCCAAGCAATGCCCAATGAGTTTTATGGGCAAAGGCATGTTGCATTTAGGGGTGGCTCCTCTCATTCATCTCCTGATCAACCATCATCACCTCAAACTCGCAGGTAGTCCGTTCTGATCTCCTAATCTGATGGCTGGTCGCATTGAATCCGGTGCTTATGGTTGGTTTGGTGATGAGCTACCCAGAAAGCAATTGTGCTCTGGCAGCTGATACCGAATACTTTTAGCGGCCTCACCAGAATTTACTTCAGTCCGACGATACATCAGATTTATCATAGCACTACCTGATATCGGCAGCACCAACCTTCTGATTTCTGAANCAGCCAT]
[+] EMBL CB667454 [AAGGTTCCATTTAAGGACCGACACTCAGGCTCAAGAAACCACAGAGGAAATTATAACACTGACAAGGGTGACCATAATGATAAAGAAGGAAATTGGATAAATTCAAAACAACGAAATCCTGGCCGCAGCTATGGACGTAGCCACTCAGAGAGGTCTGGCATACGATCGGATAGACAAGCAGCAGATGAAAACCAGTATGATAGGCAGCGGCGATCTTATAGAAATGATTCATACAGGCATGAGACAGGCGCCCAATCTTCTGGATCAACAAACTATATACGCAGACCAGGGAACATGACACATGGGGATCCATCACCATCTGCTTCAAATGGTATCGGTGCCCTTTCTGGGTCTTCAGCTCCATATTTCATGTACTACTCATGTGAACCAGGCACAAATCACGGTTCTTCATCTGAACCACTTGAATTTGGTTCACTTGGGCCAGTTCCTACAGCTGATGGTGGTGACATGCCACGACCCACTCGCCAAGCAATGCCCAATGAGTTTTATGGGCAAAGGCATGTTGCATTTAGGGGTGGCTCCTCTCATTCATCTCCTGATCAACCATCATCACCTCAAACTCGCAGGTAGTCCGTTCTGATCTCCTAATCTGATGGCTGGTCGCATTGAATCCGGTGCTTATGGTTGGTTTGGTGATGAGCTACCCAGAAAGCAATTGTGCTCTGGCAGCTGATACCGAATACTTTTAGCGGCCTCACCAGAATTTACTTCAGTCCGACGATACATCAGATTTATCATAGCACTACCTGATATCGGCAGCACCAACCTTCTGATTTCTGAANCAGCCAT]
consensusID : consensus_2476#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 487 fasta sequence
[CGGGTGGCATCGAATCCGGTGCTTATGGTGGGTTTGGTGATGAGCTACCCAGAAAGCAATAGTGTTGTGGCAGCAGATACCGAATAATTTTAGCGGCCTCCCCAGAATTTATTTCAGTCGGCCGATACATCAGATTTTTCATAGCACTACTTGATATTGGCAGCACCACCCTTCTGATTTTTGAACAACCCATCCAACTTGGAGCCCCGAATATTTTCTTGAAGAATTACCCTCAAGGATAAGCTGGAGGATTATTTGAGAGGGCCCCCCTCCTTTGTAATATTACCGCCAAAAGAAGATTATTAATGCTGAAGAAAGGAGAAGAATTGGCTTTTCACCCTCGAAAAGCAGGGAAAATTATTGGTGGACAAAAGTAATTGAAGGAAGGAGATATTTTTTTGTTTTCAGGTAGAAGAGAGATGGTGTACTTTAGTTTACATCCAACAAAACTTTTCACATCAGATGTAGTAGATTTTAGGGGAATCCT]
[-] EMBL CB667455 [CGGGTGGCATCGAATCCGGTGCTTATGGTGGGTTTGGTGATGAGCTACCCAGAAAGCAATAGTGTTGTGGCAGCAGATACCGAATAATTTTAGCGGCCTCCCCAGAATTTATTTCAGTCGGCCGATACATCAGATTTTTCATAGCACTACTTGATATTGGCAGCACCACCCTTCTGATTTTTGAACAACCCATCCAACTTGGAGCCCCGAATATTTTCTTGAAGAATTACCCTCAAGGATAAGCTGGAGGATTATTTGAGAGGGCCCCCCTCCTTTGTAATATTACCGCCAAAAGAAGATTATTAATGCTGAAGAAAGGAGAAGAATTGGCTTTTCACCCTCGAAAAGCAGGGAAAATTATTGGTGGACAAAAGTAATTGAAGGAAGGAGATATTTTTTTGTTTTCAGGTAGAAGAGAGATGGTGTACTTTAGTTTACATCCAACAAAACTTTTCACATCAGATGTAGTAGATTTTAGGGGAATCCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2476#0 AAGGTTCCATTTAAGGACCGACACTCAGGCTCAAGAAACCACAGAGGAAATTATAACACT 60
consensus_2476#1 ------------------------------------------------------------
consensus_2476#0 GACAAGGGTGACCATAATGATAAAGAAGGAAATTGGATAAATTCAAAACAACGAAATCCT 120
consensus_2476#1 ------------------------------------------------------------
consensus_2476#0 GGCCGCAGCTATGGACGTAGCCACTCAGAGAGGTCTGGCATACGATCGGATAGACAAGCA 180
consensus_2476#1 -------------------------------CGGGTGGCATCGAATCCGGTGCTTATGGT 29
* ****** *** * * * *
consensus_2476#0 GCAGATGAAAACCAGTATGATAGGCAGCGGCGATCTTATAGAAATGATTCATACAGGCAT 240
consensus_2476#1 GGGTTTGGTGATGAGCTACCCAGAAAGCAATAGTGTTGTGGCAGCAGATACCGAATAATT 89
* ** * ** ** *** * ** * * * * * *
consensus_2476#0 GAGACAGGCGCCCAATCTTCTGGATCAACAAACTATATACG-CAGACCAGGGAACATGAC 299
consensus_2476#1 TTAGCGGCCTCCCCAGAATTTATTTCAGTCGGCCG-ATACATCAGATTTTTCATAGCACT 148
* * * *** * * * *** * **** **** *
consensus_2476#0 ACATGGGGATC-CATCACCATCTGCTTCAAATGGTATCGGTGC--CCTTTCTGGGTCTTC 356
consensus_2476#1 ACTTGATATTGGCAGCACCACCCTTCTGATTTTTGAACAACCCATCCAACTTGGAGCCCC 208
** ** * ** ***** * * * * * * * ** *** * *
consensus_2476#0 AGCTCCATATTTCATGTACTACTCATGTGAACCAGGCACAAATCACGGTTCTTCATCTGA 416
consensus_2476#1 GAATATTTTCTTGAAGAATTACCCTCAAGGATAAGCTGGAG-----GATTATTTGAGAGG 263
* * ** * * * *** * * * ** * * ** ** *
consensus_2476#0 ACCACTTGAATTTGGTTCACTTGGGCCAGTTCCT-ACAGCTGATGGTGGTGACATGCCAC 475
consensus_2476#1 GCCCCCCTCCTTTGTAATATTACCGCCAAAAGAAGATTATTAATGCTGAAGAAAGGAGAA 323
** * **** * * **** * * *** ** ** * * *
consensus_2476#0 GACCCA-CTCGCCAAGC--AATGCCCAATGAGTTTTATGGGCAAAGGCATGTTGCATTTA 532
consensus_2476#1 GAATTGGCTTTTCACCCTCGAAAAGCAGGGAAAATTATTGGTGGACAAAAGTA--ATTGA 381
** ** ** * * ** ** **** ** * * ** *** *
consensus_2476#0 GGGGTGGCTCCTCTCATTCATCTCCTGATCAACCATCATCACCTCAAACTCGCAGGTAGT 592
consensus_2476#1 AGGAAGGAGATATTTTTTTGTTTTCAGGTAGAAGAGAGATGGTGTACTTTAGTTTACATC 441
** ** * ** * * * * * * * * * * *
consensus_2476#0 CCGTTCTGATCTCCTAATCTGATGGCTGGTCGCATTGAATCCGGTGCTTATGGTTGGTTT 652
consensus_2476#1 CAACAAAACTTTTCACATCAGATG--TAGTAGATTTTAGGGGAATCCT------------ 487
* * * * *** **** * ** * ** * * **
consensus_2476#0 GGTGATGAGCTACCCAGAAAGCAATTGTGCTCTGGCAGCTGATACCGAATACTTTTAGCG 712
consensus_2476#1 ------------------------------------------------------------
consensus_2476#0 GCCTCACCAGAATTTACTTCAGTCCGACGATACATCAGATTTATCATAGCACTACCTGAT 772
consensus_2476#1 ------------------------------------------------------------
consensus_2476#0 ATCGGCAGCACCAACCTTCTGATTTCTGAANCAGCCAT 810
consensus_2476#1 --------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||