cluster # 2482

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Oryza sativa
cluster # 2482 cluster # 2482 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2482#0 length = 891 sequences # 1

consensus_2482#1 length = 610 sequences # 1

consensusID : consensus_2482#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 891
fasta sequence

                              [ACACACACACCGGCGCCGCCGCCCCTACTCCGATGGCTACTCCGGCCAGCGAGCCCGCCGGCGCAGGGACGCCGGAGCCAGCAGCGCCGTTCTCCGCCGACTGGAAGGAGCGGATCTTGCTGCCCGCCGCGGTCGCCGGTGTGGTCGGAGCTGGATTCGGGCTGCTGTCGCGGCACCGGGCTCGCCTTGGCGCCGCCCGCGCCACCGCCACCTACGCCGCCAACCTCGCCATCGTCGCCGGGTGCTACGGTGGAGCACGTGAACTTGCAAGAGATGCTCGGGCTTCAACACCTGATGATCCCATGAACTCCGTTGTTGGTGGGCTAGCAAGCGGAGCTGTTCTTGGTCGATTACAAGGCGGACACTTTGGGGCAGTTAAGTATGCAGTTACCTTTGCAGCTGCTGGTACCGCATTGGACTATGCTGCACTGAAGCTGAGTCCTCAAATTAATGGCAAATGGCATGCCCTGAAAGAACATTTTTCTGGAGACAAAGACTGGTTTACGCTCCCCGAATGGTCGCCTATTCAGGTGTTGGATGAGGAGGCCTTGGCGAAGAAACGAGCTCGAGAAGAGAAGTTGTTCGCTCAGCGAGCTCTCAGTAAACTTAGCAAGGAGGAACCATAGTTACAGTGCTACAGTACTGCTATAGACTTGATAGTTTTGTCAAGGCGCTATGCGTCACGTAAACCATTATAGTTCTAGACTGTTAGAACATTCAAATTTTGGAGTTTTTTTTATCTTTTCGTTATCCTTTGTAAGCTTTTCACGGAAAGGGAGAAACCATGTTGGTCATTGTTGTACTGGAAAGGGTTTTAGCTTCCAAAACATTTGCTTGTCTGCTGTGGTGTTTGTAATACTGCTGGTAATCTGGCACCTTTTGGAAGTAAAC]

[+] EMBL AK102582             [ACACACACACCGGCGCCGCCGCCCCTACTCCGATGGCTACTCCGGCCAGCGAGCCCGCCGGCGCAGGGACGCCGGAGCCAGCAGCGCCGTTCTCCGCCGACTGGAAGGAGCGGATCTTGCTGCCCGCCGCGGTCGCCGGTGTGGTCGGAGCTGGATTCGGGCTGCTGTCGCGGCACCGGGCTCGCCTTGGCGCCGCCCGCGCCACCGCCACCTACGCCGCCAACCTCGCCATCGTCGCCGGGTGCTACGGTGGAGCACGTGAACTTGCAAGAGATGCTCGGGCTTCAACACCTGATGATCCCATGAACTCCGTTGTTGGTGGGCTAGCAAGCGGAGCTGTTCTTGGTCGATTACAAGGCGGACACTTTGGGGCAGTTAAGTATGCAGTTACCTTTGCAGCTGCTGGTACCGCATTGGACTATGCTGCACTGAAGCTGAGTCCTCAAATTAATGGCAAATGGCATGCCCTGAAAGAACATTTTTCTGGAGACAAAGACTGGTTTACGCTCCCCGAATGGTCGCCTATTCAGGTGTTGGATGAGGAGGCCTTGGCGAAGAAACGAGCTCGAGAAGAGAAGTTGTTCGCTCAGCGAGCTCTCAGTAAACTTAGCAAGGAGGAACCATAGTTACAGTGCTACAGTACTGCTATAGACTTGATAGTTTTGTCAAGGCGCTATGCGTCACGTAAACCATTATAGTTCTAGACTGTTAGAACATTCAAATTTTGGAGTTTTTTTTATCTTTTCGTTATCCTTTGTAAGCTTTTCACGGAAAGGGAGAAACCATGTTGGTCATTGTTGTACTGGAAAGGGTTTTAGCTTCCAAAACATTTGCTTGTCTGCTGTGGTGTTTGTAATACTGCTGGTAATCTGGCACCTTTTGGAAGTAAAC]




>consensus_2482#0
ACACACACACCGGCGCCGCCGCCCCTACTCCGATGGCTACTCCGGCCAGCGAGCCCGCCG
GCGCAGGGACGCCGGAGCCAGCAGCGCCGTTCTCCGCCGACTGGAAGGAGCGGATCTTGC
TGCCCGCCGCGGTCGCCGGTGTGGTCGGAGCTGGATTCGGGCTGCTGTCGCGGCACCGGG
CTCGCCTTGGCGCCGCCCGCGCCACCGCCACCTACGCCGCCAACCTCGCCATCGTCGCCG
GGTGCTACGGTGGAGCACGTGAACTTGCAAGAGATGCTCGGGCTTCAACACCTGATGATC
CCATGAACTCCGTTGTTGGTGGGCTAGCAAGCGGAGCTGTTCTTGGTCGATTACAAGGCG
GACACTTTGGGGCAGTTAAGTATGCAGTTACCTTTGCAGCTGCTGGTACCGCATTGGACT
ATGCTGCACTGAAGCTGAGTCCTCAAATTAATGGCAAATGGCATGCCCTGAAAGAACATT
TTTCTGGAGACAAAGACTGGTTTACGCTCCCCGAATGGTCGCCTATTCAGGTGTTGGATG
AGGAGGCCTTGGCGAAGAAACGAGCTCGAGAAGAGAAGTTGTTCGCTCAGCGAGCTCTCA
GTAAACTTAGCAAGGAGGAACCATAGTTACAGTGCTACAGTACTGCTATAGACTTGATAG
TTTTGTCAAGGCGCTATGCGTCACGTAAACCATTATAGTTCTAGACTGTTAGAACATTCA
AATTTTGGAGTTTTTTTTATCTTTTCGTTATCCTTTGTAAGCTTTTCACGGAAAGGGAGA
AACCATGTTGGTCATTGTTGTACTGGAAAGGGTTTTAGCTTCCAAAACATTTGCTTGTCT
GCTGTGGTGTTTGTAATACTGCTGGTAATCTGGCACCTTTTGGAAGTAAAC

consensusID : consensus_2482#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 610
fasta sequence

                              [AGGACGAGACAAGGGGACACTTTGGGGCAGTTAAGTATGCGGTCACCTTTGCAGCTGCTGGTACCGCATTGGACTATGCCGCACTGAAGCTGAGACCTCAACTTAACGGCAAATGGCATGCCCTGAAAGAGCATTTTTCTGGAGGCAAAGACTGGTTTACGCTCCCCGAATGGTCGCCTATCCAGGTGTTGGATGAGGAAGCCTTGGCAAAGAAACGAGCTCGAGAAGAGAAGTTGTTTGCTCAGCGAGCTCTTGGTAAACTTAGCAAGGAGGAACCATAGTTACAGTGCTACACTACTGATATAGACTTGATAATTTTGTCAAGGCGCTATGCGTCACGTAAACCATTATAGTTCTAGACTGCTAGAACATTTAGATTTTGGTTTTTTCATATTTTTGCTGTCTTTGTAAGATTTTCATGGAGGGAGAGAAACCATGTTGGTCATTGTTGTACTGGAAAGGGTTTTAGCTACCAAAACATTTGCAAGCCTGTAGCGGTGTTTGTAATACTGCTGGTAATCTGGCACCTTTTGGAAGTTAACCCTTTGAATCAAAAACCAGAATTTGAGAAATTTAAATGCATCATTTTCCTGTAAAAAAAAAAAAAAAA]

[-] EMBL CA762621             [AGGACGAGACAAGGGGACACTTTGGGGCAGTTAAGTATGCGGTCACCTTTGCAGCTGCTGGTACCGCATTGGACTATGCCGCACTGAAGCTGAGACCTCAACTTAACGGCAAATGGCATGCCCTGAAAGAGCATTTTTCTGGAGGCAAAGACTGGTTTACGCTCCCCGAATGGTCGCCTATCCAGGTGTTGGATGAGGAAGCCTTGGCAAAGAAACGAGCTCGAGAAGAGAAGTTGTTTGCTCAGCGAGCTCTTGGTAAACTTAGCAAGGAGGAACCATAGTTACAGTGCTACACTACTGATATAGACTTGATAATTTTGTCAAGGCGCTATGCGTCACGTAAACCATTATAGTTCTAGACTGCTAGAACATTTAGATTTTGGTTTTTTCATATTTTTGCTGTCTTTGTAAGATTTTCATGGAGGGAGAGAAACCATGTTGGTCATTGTTGTACTGGAAAGGGTTTTAGCTACCAAAACATTTGCAAGCCTGTAGCGGTGTTTGTAATACTGCTGGTAATCTGGCACCTTTTGGAAGTTAACCCTTTGAATCAAAAACCAGAATTTGAGAAATTTAAATGCATCATTTTCCTGTAAAAAAAAAAAAAAAA]




>consensus_2482#1
AGGACGAGACAAGGGGACACTTTGGGGCAGTTAAGTATGCGGTCACCTTTGCAGCTGCTG
GTACCGCATTGGACTATGCCGCACTGAAGCTGAGACCTCAACTTAACGGCAAATGGCATG
CCCTGAAAGAGCATTTTTCTGGAGGCAAAGACTGGTTTACGCTCCCCGAATGGTCGCCTA
TCCAGGTGTTGGATGAGGAAGCCTTGGCAAAGAAACGAGCTCGAGAAGAGAAGTTGTTTG
CTCAGCGAGCTCTTGGTAAACTTAGCAAGGAGGAACCATAGTTACAGTGCTACACTACTG
ATATAGACTTGATAATTTTGTCAAGGCGCTATGCGTCACGTAAACCATTATAGTTCTAGA
CTGCTAGAACATTTAGATTTTGGTTTTTTCATATTTTTGCTGTCTTTGTAAGATTTTCAT
GGAGGGAGAGAAACCATGTTGGTCATTGTTGTACTGGAAAGGGTTTTAGCTACCAAAACA
TTTGCAAGCCTGTAGCGGTGTTTGTAATACTGCTGGTAATCTGGCACCTTTTGGAAGTTA
ACCCTTTGAATCAAAAACCAGAATTTGAGAAATTTAAATGCATCATTTTCCTGTAAAAAA
AAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2482#0      ACACACACACCGGCGCCGCCGCCCCTACTCCGATGGCTACTCCGGCCAGCGAGCCCGCCG 60
consensus_2482#1      ------------------------------------------------------------
                                                                                  

consensus_2482#0      GCGCAGGGACGCCGGAGCCAGCAGCGCCGTTCTCCGCCGACTGGAAGGAGCGGATCTTGC 120
consensus_2482#1      ------------------------------------------------------------
                                                                                  

consensus_2482#0      TGCCCGCCGCGGTCGCCGGTGTGGTCGGAGCTGGATTCGGGCTGCTGTCGCGGCACCGGG 180
consensus_2482#1      ------------------------------------------------------------
                                                                                  

consensus_2482#0      CTCGCCTTGGCGCCGCCCGCGCCACCGCCACCTACGCCGCCAACCTCGCCATCGTCGCCG 240
consensus_2482#1      ------------------------------------------------------------
                                                                                  

consensus_2482#0      GGTGCTACGGTGGAGCACGTGAACTTGCAAGAGATGCTCGGGCTTCAACACCTGATGATC 300
consensus_2482#1      ------------------------------------------------------------
                                                                                  

consensus_2482#0      CCATGAACTCCGTTGTTGGTGGGCTAGCAAGCGGAGCTGTTCTTGGTCGATTACAAGGCG 360
consensus_2482#1      -------------------------------------------AGGACGAG-ACAAGG-G 15
                                                                  ** ***  ****** *

consensus_2482#0      GACACTTTGGGGCAGTTAAGTATGCAGTTACCTTTGCAGCTGCTGGTACCGCATTGGACT 420
consensus_2482#1      GACACTTTGGGGCAGTTAAGTATGCGGTCACCTTTGCAGCTGCTGGTACCGCATTGGACT 75
                      ************************* ** *******************************

consensus_2482#0      ATGCTGCACTGAAGCTGAGTCCTCAAATTAATGGCAAATGGCATGCCCTGAAAGAACATT 480
consensus_2482#1      ATGCCGCACTGAAGCTGAGACCTCAACTTAACGGCAAATGGCATGCCCTGAAAGAGCATT 135
                      **** ************** ****** **** *********************** ****

consensus_2482#0      TTTCTGGAGACAAAGACTGGTTTACGCTCCCCGAATGGTCGCCTATTCAGGTGTTGGATG 540
consensus_2482#1      TTTCTGGAGGCAAAGACTGGTTTACGCTCCCCGAATGGTCGCCTATCCAGGTGTTGGATG 195
                      ********* ************************************ *************

consensus_2482#0      AGGAGGCCTTGGCGAAGAAACGAGCTCGAGAAGAGAAGTTGTTCGCTCAGCGAGCTCTCA 600
consensus_2482#1      AGGAAGCCTTGGCAAAGAAACGAGCTCGAGAAGAGAAGTTGTTTGCTCAGCGAGCTCTTG 255
                      **** ******** ***************************** **************  

consensus_2482#0      GTAAACTTAGCAAGGAGGAACCATAGTTACAGTGCTACAGTACTGCTATAGACTTGATAG 660
consensus_2482#1      GTAAACTTAGCAAGGAGGAACCATAGTTACAGTGCTACACTACTGATATAGACTTGATAA 315
                      *************************************** ***** ************* 

consensus_2482#0      TTTTGTCAAGGCGCTATGCGTCACGTAAACCATTATAGTTCTAGACTGTTAGAACATTCA 720
consensus_2482#1      TTTTGTCAAGGCGCTATGCGTCACGTAAACCATTATAGTTCTAGACTGCTAGAACATTTA 375
                      ************************************************ ********* *

consensus_2482#0      AATTTTGGAGTTTTTTTTATCTTTTCGTTATCCTTTGTAAGCTTTTCACGGAAAGGGAGA 780
consensus_2482#1      GATTTTGG---TTTTTTCATATTTTTGCTGTC-TTTGTAAGATTTTCATGGAGGGAGAGA 431
                       *******   ****** ** **** * * ** ******** ****** ***  * ****

consensus_2482#0      AACCATGTTGGTCATTGTTGTACTGGAAAGGGTTTTAGCTTCCAAAACATTTGCTTGTCT 840
consensus_2482#1      AACCATGTTGGTCATTGTTGTACTGGAAAGGGTTTTAGCTACCAAAACATTTGCAAGCCT 491
                      **************************************** *************  * **

consensus_2482#0      GCTGTGGTGTTTGTAATACTGCTGGTAATCTGGCACCTTTTGGAAGTAAAC--------- 891
consensus_2482#1      GTAGCGGTGTTTGTAATACTGCTGGTAATCTGGCACCTTTTGGAAGTTAACCCTTTGAAT 551
                      *  * ****************************************** ***         

consensus_2482#0      -----------------------------------------------------------
consensus_2482#1      CAAAAACCAGAATTTGAGAAATTTAAATGCATCATTTTCCTGTAAAAAAAAAAAAAAAA 610