These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2482#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 891 fasta sequence [ACACACACACCGGCGCCGCCGCCCCTACTCCGATGGCTACTCCGGCCAGCGAGCCCGCCGGCGCAGGGACGCCGGAGCCAGCAGCGCCGTTCTCCGCCGACTGGAAGGAGCGGATCTTGCTGCCCGCCGCGGTCGCCGGTGTGGTCGGAGCTGGATTCGGGCTGCTGTCGCGGCACCGGGCTCGCCTTGGCGCCGCCCGCGCCACCGCCACCTACGCCGCCAACCTCGCCATCGTCGCCGGGTGCTACGGTGGAGCACGTGAACTTGCAAGAGATGCTCGGGCTTCAACACCTGATGATCCCATGAACTCCGTTGTTGGTGGGCTAGCAAGCGGAGCTGTTCTTGGTCGATTACAAGGCGGACACTTTGGGGCAGTTAAGTATGCAGTTACCTTTGCAGCTGCTGGTACCGCATTGGACTATGCTGCACTGAAGCTGAGTCCTCAAATTAATGGCAAATGGCATGCCCTGAAAGAACATTTTTCTGGAGACAAAGACTGGTTTACGCTCCCCGAATGGTCGCCTATTCAGGTGTTGGATGAGGAGGCCTTGGCGAAGAAACGAGCTCGAGAAGAGAAGTTGTTCGCTCAGCGAGCTCTCAGTAAACTTAGCAAGGAGGAACCATAGTTACAGTGCTACAGTACTGCTATAGACTTGATAGTTTTGTCAAGGCGCTATGCGTCACGTAAACCATTATAGTTCTAGACTGTTAGAACATTCAAATTTTGGAGTTTTTTTTATCTTTTCGTTATCCTTTGTAAGCTTTTCACGGAAAGGGAGAAACCATGTTGGTCATTGTTGTACTGGAAAGGGTTTTAGCTTCCAAAACATTTGCTTGTCTGCTGTGGTGTTTGTAATACTGCTGGTAATCTGGCACCTTTTGGAAGTAAAC] [+] EMBL AK102582 [ACACACACACCGGCGCCGCCGCCCCTACTCCGATGGCTACTCCGGCCAGCGAGCCCGCCGGCGCAGGGACGCCGGAGCCAGCAGCGCCGTTCTCCGCCGACTGGAAGGAGCGGATCTTGCTGCCCGCCGCGGTCGCCGGTGTGGTCGGAGCTGGATTCGGGCTGCTGTCGCGGCACCGGGCTCGCCTTGGCGCCGCCCGCGCCACCGCCACCTACGCCGCCAACCTCGCCATCGTCGCCGGGTGCTACGGTGGAGCACGTGAACTTGCAAGAGATGCTCGGGCTTCAACACCTGATGATCCCATGAACTCCGTTGTTGGTGGGCTAGCAAGCGGAGCTGTTCTTGGTCGATTACAAGGCGGACACTTTGGGGCAGTTAAGTATGCAGTTACCTTTGCAGCTGCTGGTACCGCATTGGACTATGCTGCACTGAAGCTGAGTCCTCAAATTAATGGCAAATGGCATGCCCTGAAAGAACATTTTTCTGGAGACAAAGACTGGTTTACGCTCCCCGAATGGTCGCCTATTCAGGTGTTGGATGAGGAGGCCTTGGCGAAGAAACGAGCTCGAGAAGAGAAGTTGTTCGCTCAGCGAGCTCTCAGTAAACTTAGCAAGGAGGAACCATAGTTACAGTGCTACAGTACTGCTATAGACTTGATAGTTTTGTCAAGGCGCTATGCGTCACGTAAACCATTATAGTTCTAGACTGTTAGAACATTCAAATTTTGGAGTTTTTTTTATCTTTTCGTTATCCTTTGTAAGCTTTTCACGGAAAGGGAGAAACCATGTTGGTCATTGTTGTACTGGAAAGGGTTTTAGCTTCCAAAACATTTGCTTGTCTGCTGTGGTGTTTGTAATACTGCTGGTAATCTGGCACCTTTTGGAAGTAAAC] consensusID : consensus_2482#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 610 fasta sequence [AGGACGAGACAAGGGGACACTTTGGGGCAGTTAAGTATGCGGTCACCTTTGCAGCTGCTGGTACCGCATTGGACTATGCCGCACTGAAGCTGAGACCTCAACTTAACGGCAAATGGCATGCCCTGAAAGAGCATTTTTCTGGAGGCAAAGACTGGTTTACGCTCCCCGAATGGTCGCCTATCCAGGTGTTGGATGAGGAAGCCTTGGCAAAGAAACGAGCTCGAGAAGAGAAGTTGTTTGCTCAGCGAGCTCTTGGTAAACTTAGCAAGGAGGAACCATAGTTACAGTGCTACACTACTGATATAGACTTGATAATTTTGTCAAGGCGCTATGCGTCACGTAAACCATTATAGTTCTAGACTGCTAGAACATTTAGATTTTGGTTTTTTCATATTTTTGCTGTCTTTGTAAGATTTTCATGGAGGGAGAGAAACCATGTTGGTCATTGTTGTACTGGAAAGGGTTTTAGCTACCAAAACATTTGCAAGCCTGTAGCGGTGTTTGTAATACTGCTGGTAATCTGGCACCTTTTGGAAGTTAACCCTTTGAATCAAAAACCAGAATTTGAGAAATTTAAATGCATCATTTTCCTGTAAAAAAAAAAAAAAAA] [-] EMBL CA762621 [AGGACGAGACAAGGGGACACTTTGGGGCAGTTAAGTATGCGGTCACCTTTGCAGCTGCTGGTACCGCATTGGACTATGCCGCACTGAAGCTGAGACCTCAACTTAACGGCAAATGGCATGCCCTGAAAGAGCATTTTTCTGGAGGCAAAGACTGGTTTACGCTCCCCGAATGGTCGCCTATCCAGGTGTTGGATGAGGAAGCCTTGGCAAAGAAACGAGCTCGAGAAGAGAAGTTGTTTGCTCAGCGAGCTCTTGGTAAACTTAGCAAGGAGGAACCATAGTTACAGTGCTACACTACTGATATAGACTTGATAATTTTGTCAAGGCGCTATGCGTCACGTAAACCATTATAGTTCTAGACTGCTAGAACATTTAGATTTTGGTTTTTTCATATTTTTGCTGTCTTTGTAAGATTTTCATGGAGGGAGAGAAACCATGTTGGTCATTGTTGTACTGGAAAGGGTTTTAGCTACCAAAACATTTGCAAGCCTGTAGCGGTGTTTGTAATACTGCTGGTAATCTGGCACCTTTTGGAAGTTAACCCTTTGAATCAAAAACCAGAATTTGAGAAATTTAAATGCATCATTTTCCTGTAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2482#0 ACACACACACCGGCGCCGCCGCCCCTACTCCGATGGCTACTCCGGCCAGCGAGCCCGCCG 60 consensus_2482#1 ------------------------------------------------------------ consensus_2482#0 GCGCAGGGACGCCGGAGCCAGCAGCGCCGTTCTCCGCCGACTGGAAGGAGCGGATCTTGC 120 consensus_2482#1 ------------------------------------------------------------ consensus_2482#0 TGCCCGCCGCGGTCGCCGGTGTGGTCGGAGCTGGATTCGGGCTGCTGTCGCGGCACCGGG 180 consensus_2482#1 ------------------------------------------------------------ consensus_2482#0 CTCGCCTTGGCGCCGCCCGCGCCACCGCCACCTACGCCGCCAACCTCGCCATCGTCGCCG 240 consensus_2482#1 ------------------------------------------------------------ consensus_2482#0 GGTGCTACGGTGGAGCACGTGAACTTGCAAGAGATGCTCGGGCTTCAACACCTGATGATC 300 consensus_2482#1 ------------------------------------------------------------ consensus_2482#0 CCATGAACTCCGTTGTTGGTGGGCTAGCAAGCGGAGCTGTTCTTGGTCGATTACAAGGCG 360 consensus_2482#1 -------------------------------------------AGGACGAG-ACAAGG-G 15 ** *** ****** * consensus_2482#0 GACACTTTGGGGCAGTTAAGTATGCAGTTACCTTTGCAGCTGCTGGTACCGCATTGGACT 420 consensus_2482#1 GACACTTTGGGGCAGTTAAGTATGCGGTCACCTTTGCAGCTGCTGGTACCGCATTGGACT 75 ************************* ** ******************************* consensus_2482#0 ATGCTGCACTGAAGCTGAGTCCTCAAATTAATGGCAAATGGCATGCCCTGAAAGAACATT 480 consensus_2482#1 ATGCCGCACTGAAGCTGAGACCTCAACTTAACGGCAAATGGCATGCCCTGAAAGAGCATT 135 **** ************** ****** **** *********************** **** consensus_2482#0 TTTCTGGAGACAAAGACTGGTTTACGCTCCCCGAATGGTCGCCTATTCAGGTGTTGGATG 540 consensus_2482#1 TTTCTGGAGGCAAAGACTGGTTTACGCTCCCCGAATGGTCGCCTATCCAGGTGTTGGATG 195 ********* ************************************ ************* consensus_2482#0 AGGAGGCCTTGGCGAAGAAACGAGCTCGAGAAGAGAAGTTGTTCGCTCAGCGAGCTCTCA 600 consensus_2482#1 AGGAAGCCTTGGCAAAGAAACGAGCTCGAGAAGAGAAGTTGTTTGCTCAGCGAGCTCTTG 255 **** ******** ***************************** ************** consensus_2482#0 GTAAACTTAGCAAGGAGGAACCATAGTTACAGTGCTACAGTACTGCTATAGACTTGATAG 660 consensus_2482#1 GTAAACTTAGCAAGGAGGAACCATAGTTACAGTGCTACACTACTGATATAGACTTGATAA 315 *************************************** ***** ************* consensus_2482#0 TTTTGTCAAGGCGCTATGCGTCACGTAAACCATTATAGTTCTAGACTGTTAGAACATTCA 720 consensus_2482#1 TTTTGTCAAGGCGCTATGCGTCACGTAAACCATTATAGTTCTAGACTGCTAGAACATTTA 375 ************************************************ ********* * consensus_2482#0 AATTTTGGAGTTTTTTTTATCTTTTCGTTATCCTTTGTAAGCTTTTCACGGAAAGGGAGA 780 consensus_2482#1 GATTTTGG---TTTTTTCATATTTTTGCTGTC-TTTGTAAGATTTTCATGGAGGGAGAGA 431 ******* ****** ** **** * * ** ******** ****** *** * **** consensus_2482#0 AACCATGTTGGTCATTGTTGTACTGGAAAGGGTTTTAGCTTCCAAAACATTTGCTTGTCT 840 consensus_2482#1 AACCATGTTGGTCATTGTTGTACTGGAAAGGGTTTTAGCTACCAAAACATTTGCAAGCCT 491 **************************************** ************* * ** consensus_2482#0 GCTGTGGTGTTTGTAATACTGCTGGTAATCTGGCACCTTTTGGAAGTAAAC--------- 891 consensus_2482#1 GTAGCGGTGTTTGTAATACTGCTGGTAATCTGGCACCTTTTGGAAGTTAACCCTTTGAAT 551 * * ****************************************** *** consensus_2482#0 ----------------------------------------------------------- consensus_2482#1 CAAAAACCAGAATTTGAGAAATTTAAATGCATCATTTTCCTGTAAAAAAAAAAAAAAAA 610 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||