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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2483#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1216 fasta sequence
[CTTTCAACCCCATCCACCTCCGGACTCCGGTTGCGTTGCGCCATGGCGCTGCAGCTTCAGGCCGCCACTCCGCATCCCCCTCTTCCTCTCCGCTCCTCACGCCGCCGCTTCGCTGCTCCGCCGTCGCCTCTCGTTCTCCGCGCCGTAGCTTCCTCCCGCGATGGCCCCTCCACGCGCCTCTCCTCTCCTGCGCCCGCGCCGCCTCGCCGCCGGCGGCGTGCGAGCGTGAGGGCCCGCGCCGGCGCGGGCAGAGGCGGCCGGGGGGAGTCCCCGTACGACGTGCTCGGCGTGCCTCCGTCGGCGCCGCCCGAAGAGATCAAGCGCGCGTACCGGCGGCTTGCTCTCAAGTTCCACCCGGACGTCAACAAGGAGCCCAACGCGCAAGAGAAATTTCTGCGGATCAAGCATGCGTACAACACGCTCATGAATTCAGAGAGCCGGTCCAAGTACGCGAGCACTAGCAGCAACACATATTATTCGTCCAGGACATACGGGAAGAGCAGCACTACTTCAGCTGATGAAGAAGAGCCATTCTATGGCTTTGGTACTGGAATACCTTCTCTTCTGCATTAGTGAGCTATATTATGGTTTCTGTGGTTAGGAATTTCGTGCTAGTGATGAGTAAAATGAAGTTTCAAGAGAGATCCTTTCTGCTAAGAAACAACTGGTAGATTAGATCACATCATAATCCTTGTATTTTGAAACTTCAGTAGATAAATGGAACTCTAGGGTGTGTAGTTACTAGATAGTTGAACTAAAAATGTTCCATTATTTGACATTATACTGTGGTCATGGATCTGCAGGGGATTTCCTTAGAGATCTTCAAGCAGAATTTCAGAACTGGGAAGCCGGTCTGAATTCAGAACAGAAACCTAAAAGCTTGTGGGAAGAGTTGGCAGCCATTGGTGAAGAATTTGTTGAGTTTCTGGAGAACGAACTCAAGATCGATGACTCAAGTGATGCGGAAGACAATGCAAATGATCCGTACACACAGTCTGGAGGCAAAAACAAGCAAGATGTTAATACATCGACAAGTAGCTTTGATGATAGCGTATCTGAGATAGAGGCTGCTTTGGAGAAGCTGAAGAAGGAACTTGGGCTCAGCTGAGCCATTTGATACCGATAGCATAGCATATCATACTGCTGCAACTATAGGTCTATAGCCATCTGCAACTGACTTGGTGTTCTTACGAAGTTATTTCTTATACTCAAATGT]
[+] EMBL AK099592 [CTTTCAACCCCATCCACCTCCGGACTCCGGTTGCGTTGCGCCATGGCGCTGCAGCTTCAGGCCGCCACTCCGCATCCCCCTCTTCCTCTCCGCTCCTCACGCCGCCGCTTCGCTGCTCCGCCGTCGCCTCTCGTTCTCCGCGCCGTAGCTTCCTCCCGCGATGGCCCCTCCACGCGCCTCTCCTCTCCTGCGCCCGCGCCGCCTCGCCGCCGGCGGCGTGCGAGCGTGAGGGCCCGCGCCGGCGCGGGCAGAGGCGGCCGGGGGGAGTCCCCGTACGACGTGCTCGGCGTGCCTCCGTCGGCGCCGCCCGAAGAGATCAAGCGCGCGTACCGGCGGCTTGCTCTCAAGTTCCACCCGGACGTCAACAAGGAGCCCAACGCGCAAGAGAAATTTCTGCGGATCAAGCATGCGTACAACACGCTCATGAATTCAGAGAGCCGGTCCAAGTACGCGAGCACTAGCAGCAACACATATTATTCGTCCAGGACATACGGGAAGAGCAGCACTACTTCAGCTGATGAAGAAGAGCCATTCTATGGCTTTGGTACTGGAATACCTTCTCTTCTGCATTAGTGAGCTATATTATGGTTTCTGTGGTTAGGAATTTCGTGCTAGTGATGAGTAAAATGAAGTTTCAAGAGAGATCCTTTCTGCTAAGAAACAACTGGTAGATTAGATCACATCATAATCCTTGTATTTTGAAACTTCAGTAGATAAATGGAACTCTAGGGTGTGTAGTTACTAGATAGTTGAACTAAAAATGTTCCATTATTTGACATTATACTGTGGTCATGGATCTGCAGGGGATTTCCTTAGAGATCTTCAAGCAGAATTTCAGAACTGGGAAGCCGGTCTGAATTCAGAACAGAAACCTAAAAGCTTGTGGGAAGAGTTGGCAGCCATTGGTGAAGAATTTGTTGAGTTTCTGGAGAACGAACTCAAGATCGATGACTCAAGTGATGCGGAAGACAATGCAAATGATCCGTACACACAGTCTGGAGGCAAAAACAAGCAAGATGTTAATACATCGACAAGTAGCTTTGATGATAGCGTATCTGAGATAGAGGCTGCTTTGGAGAAGCTGAAGAAGGAACTTGGGCTCAGCTGAGCCATTTGATACCGATAGCATAGCATATCATACTGCTGCAACTATAGGTCTATAGCCATCTGCAACTGACTTGGTGTTCTTACGAAGTTATTTCTTATACTCAAATGT]
consensusID : consensus_2483#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 985 fasta sequence
[ACAGCCGCCCCCAAACCTTGTCACCTCCTTGCGTTTCCTGATTATTTGTGTTTGATGTTGTGTCAACGTAGCCCAACGCGCAAGAGAAATTTCTGCGGATCAAGCATGCGTACAACACGCTCATGAATTCAGAGAGCCGGTCCAAGTACGCGAGCACTAGCAGCAACACATATTATTCGTCCAGGACATACGGGAAGAGCAGCACTACTTCAGCTGATGAAGAAGAGCCATTCTATGGCTTTGGGGATTTCCTTAGAGATCTTCAAGCAGAATTTCAGAACTGGGAAGCCGGTCTGAATTCAGAACAGAAACCTAAAAGCTTGTGGGAAGAGTTGGCAGCCATTGGTGAAGAATTTGTTGAGTTTCTGGAGAACGAACTCAAGATCGATGACTCAAGTGATGCGGAAGACAATGCAAATGATCCGTACACACAGTCTGGAGGCAAAAACAAGCAAGATGTTAATACATCGACAAGTAGCTTTGATGATAGCGTATCTGAGATAGAGGCTGCTTTGGAGAAGCTGAAGAAGGAACTTGGGCTCAGCTGAGCCATTTGATACCGATAGCATAGCATATCATACTGCTGCAACTATAGGTCTATAGCCATCTGCAACTGGCTTGGTGTTCTTACGAAGTTATTTCTTATACTCAAATGTTCTTGGATGCATGATACCTATAGCCATCGCAACCTGCTTGGTTGTCTGTGTGCAGGTATTTGATGTACCCATTCTTGTCTTCAGAAGGTGATGGTAGCTCAGATATTGTTAGTTTAGGTGATACAGCTCACAAGTTCAGGGCATCCAGCCTCTTTATAAGATGTTTGTGGTGTCTTGGGTGTGTTCTGCACTTGTGAAATTTTTGGGAGTAAAAGATGATATCCTGTTACACAGTGTATGTTGTCATTTCGTGCGGCCAAAATGGGTTTAATTTTGACATTTCGATGATGAATCTTACATGAATGAATTAATATGCAGTGCTTGTGTAA]
[+] EMBL AK069263 [ACAGCCGCCCCCAAACCTTGTCACCTCCTTGCGTTTCCTGATTATTTGTGTTTGATGTTGTGTCAACGTAGCCCAACGCGCAAGAGAAATTTCTGCGGATCAAGCATGCGTACAACACGCTCATGAATTCAGAGAGCCGGTCCAAGTACGCGAGCACTAGCAGCAACACATATTATTCGTCCAGGACATACGGGAAGAGCAGCACTACTTCAGCTGATGAAGAAGAGCCATTCTATGGCTTTGGGGATTTCCTTAGAGATCTTCAAGCAGAATTTCAGAACTGGGAAGCCGGTCTGAATTCAGAACAGAAACCTAAAAGCTTGTGGGAAGAGTTGGCAGCCATTGGTGAAGAATTTGTTGAGTTTCTGGAGAACGAACTCAAGATCGATGACTCAAGTGATGCGGAAGACAATGCAAATGATCCGTACACACAGTCTGGAGGCAAAAACAAGCAAGATGTTAATACATCGACAAGTAGCTTTGATGATAGCGTATCTGAGATAGAGGCTGCTTTGGAGAAGCTGAAGAAGGAACTTGGGCTCAGCTGAGCCATTTGATACCGATAGCATAGCATATCATACTGCTGCAACTATAGGTCTATAGCCATCTGCAACTGGCTTGGTGTTCTTACGAAGTTATTTCTTATACTCAAATGTTCTTGGATGCATGATACCTATAGCCATCGCAACCTGCTTGGTTGTCTGTGTGCAGGTATTTGATGTACCCATTCTTGTCTTCAGAAGGTGATGGTAGCTCAGATATTGTTAGTTTAGGTGATACAGCTCACAAGTTCAGGGCATCCAGCCTCTTTATAAGATGTTTGTGGTGTCTTGGGTGTGTTCTGCACTTGTGAAATTTTTGGGAGTAAAAGATGATATCCTGTTACACAGTGTATGTTGTCATTTCGTGCGGCCAAAATGGGTTTAATTTTGACATTTCGATGATGAATCTTACATGAATGAATTAATATGCAGTGCTTGTGTAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2483#0 CTTTCAACCCCATCCACCTCCGGACTCCGGTTGCGTTGCGCCATGGCGCTGCAGCTTCAG 60
consensus_2483#1 ------------------------------------------------------------
consensus_2483#0 GCCGCCACTCCGCATCCCCCTCTTCCTCTCCGCTCCTCACGCCGCCGCTTCGCTGCTCCG 120
consensus_2483#1 ------------------------------------------------------------
consensus_2483#0 CCGTCGCCTCTCGTTCTCCGCGCCGTAGCTTCCTCCCGCGATGGCCCCTCCACGCGCCTC 180
consensus_2483#1 ------------------------------------------------------------
consensus_2483#0 TCCTCTCCTGCGCCCGCGCCGCCTCGCCGCCGGCGGCGTGCGAGCGTGAGGGCCCGCGCC 240
consensus_2483#1 ------------------------------------------------------------
consensus_2483#0 GGCGCGGGCAGAGGCGGCCGGGGGGAGTCCCCGTACGACGTGCTCGGCGTGCCTCCGTCG 300
consensus_2483#1 --------------------------------------------------------ACAG 4
*
consensus_2483#0 GCGCCGCCCGAAGAGATCAAGCGCGCGTACCGGCGGCTTGCTCTCAAGTTCCACCCGGAC 360
consensus_2483#1 CCGCCCCCAAACCTTGTCACCTCCTTGCGTTTCCTGATTATT--TGTGTTTGATGTTG-T 61
**** ** * *** * * * * ** * *** * *
consensus_2483#0 GTCAACAAGGAGCCCAACGCGCAAGAGAAATTTCTGCGGATCAAGCATGCGTACAACACG 420
consensus_2483#1 GTCAAC--GTAGCCCAACGCGCAAGAGAAATTTCTGCGGATCAAGCATGCGTACAACACG 119
****** * **************************************************
consensus_2483#0 CTCATGAATTCAGAGAGCCGGTCCAAGTACGCGAGCACTAGCAGCAACACATATTATTCG 480
consensus_2483#1 CTCATGAATTCAGAGAGCCGGTCCAAGTACGCGAGCACTAGCAGCAACACATATTATTCG 179
************************************************************
consensus_2483#0 TCCAGGACATACGGGAAGAGCAGCACTACTTCAGCTGATGAAGAAGAGCCATTCTATGGC 540
consensus_2483#1 TCCAGGACATACGGGAAGAGCAGCACTACTTCAGCTGATGAAGAAGAGCCATTCTATGGC 239
************************************************************
consensus_2483#0 TTTGGTACTGGAATACCTTCTCTTCTGCATTAGTGAGCTATATTATGGTTTCTGTGGTTA 600
consensus_2483#1 TTTGG----GGA-----TTTCCTTAGAGATCTTCAAGCAGAATTTCAGAA-CTGGGAAGC 289
***** *** ** *** ** *** *** * *** *
consensus_2483#0 GGAATTTCGTGCTAGTGATGAGTAAAATGAAGTTTCAAGAGAGATCCTTTCTGCTAAGAA 660
consensus_2483#1 CGGTCTGAATTCAGAACAGAAACCTAAAAGCTTGTGGGAAGAGTTGGCAGCCATTGGTGA 349
* * * * * * ** * * **** * * * *
consensus_2483#0 ACAACTGGTAGATT------AGATCACA-TCATAATCCTTGTATTTTGAAACTTCAGTAG 713
consensus_2483#1 AGAATTTGTTGAGTTTCTGGAGAACGAACTCAAGATCGATG-ACTCAAGTGATGCGGAAG 408
* ** * ** ** * *** * * *** *** ** * * * * * **
consensus_2483#0 ATAAATGGAACTCTAGGGTGTGTAGTTACTAGATAGTTGAACTAAAAATGTTCCATTAT- 772
consensus_2483#1 ACAA-TGCAAATGATCCGTACACACAGTCTGGAGGCAAAAACAAGCAAGATGTTAATACA 467
* ** ** ** * ** * ** ** *** * ** * * **
consensus_2483#0 TTGACATTATACTGTGGTCATGG---ATCTGCAG--GGGATTTCCTTAGAGATCTTCAAG 827
consensus_2483#1 TCGACAAGTAGCTTTGATGATAGCGTATCTGAGATAGAGGCTGCTTTGGAGAAGCTGAAG 527
* **** ** ** * ** * ***** * * * * ** **** * ***
consensus_2483#0 CAGAATTTCAGAACTGGGAAGCCGGTCTGAATTCAGAACAGAAACCTAAAAGCTTGTGGG 887
consensus_2483#1 AAGGAACTTGGGCTCAGCTGAGCCATTTGATACCGATAGCATAGCATATCATACTGCTGC 587
** * * * * * * *** * * * * ** * ** *
consensus_2483#0 AA----GAGTTGGCAGCCATTGGTGAAGAATTTGTTGAGTTTCTGGAGAACGAACTCAAG 943
consensus_2483#1 AACTATAGGTCTATAGCCATCTGCAACTGGCTTGGTGTTCTT-------ACGAAGTTATT 640
** ** ****** * * *** ** ** ***** * *
consensus_2483#0 ATCGATGACTCAAGTGATGCGGAAGACA--ATGCAAATGATCCGTACACACAGTCTGGAG 1001
consensus_2483#1 TCTTAT-ACTCAAATGTTCTTGGATGCATGATACCTATAGCCATCGCAACCTGCTTGGTT 699
** ****** ** * * * ** ** * ** * ** * * ***
consensus_2483#0 GCAAAAACAAGCAAGATGTTAATACATCGACAAGTAGCTTT-GATGATAGCG-TATCTGA 1059
consensus_2483#1 GTCT--GTGTGCAGGTATTTGATGTACCCATTCTTGTCTTCAGAAGGTGATGGTAGCTCA 757
* *** * ** ** * * * * *** ** * * * ** ** *
consensus_2483#0 GATAGAGGCTGCTTTGGAGAAGCTGAAGAAGGAACTTGGGC--TCAGCTGAGCCATTTGA 1117
consensus_2483#1 GATATTGTTAGTTTAGGTGATACAGCTCACAAGTTCAGGGCATCCAGCCTCTTTATAAGA 817
**** * * ** ** ** * * * **** **** ** **
consensus_2483#0 TACCGATAGCATAGCATATCATACTGCTGCAACTATAGGTCTATAGCCATCTGCAACTGA 1177
consensus_2483#1 TGTTTGTGGTGTCTTGGGT-GTGTT-CTGCACTTGTGAAATTTTTGGGAGTAAAAGATGA 875
* * * * * * * ***** * * * * * * * ***
consensus_2483#0 CTTGGTGTTCT------TACGAAGTTATTTCTTATACTCAAA-TGT-------------- 1216
consensus_2483#1 TATCCTGTTACACAGTGTATGTTGTCATTTCGTGCGGCCAAAATGGGTTTAATTTTGACA 935
* **** ** * ** ***** * **** **
consensus_2483#0 --------------------------------------------------
consensus_2483#1 TTTCGATGATGAATCTTACATGAATGAATTAATATGCAGTGCTTGTGTAA 985
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||