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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2487#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 827 fasta sequence
[AGGGGGAGCGCCGAGAGGAAGAAGATGAGTAGAGCCTGTAGAGGAGAGAGCAGTGGCGGTGGCCGGAGCTCTCTGGGCTACCTCTTCGAGCCGGAGCCGGAGGATATCATTCCGGATCACTCGACTAAATCCGTTCAAGGAACCAACAAGGCCCCAAAAGGCAATATTGTTCTTGGGGACAAGATGGCCAGCGACGAAGCAAATCAAGAACACCAGGCTGCTGCTCCTCTGAAGAAAGAAGACTCCAACCCAATAGTATCTAGCCGATCTGCTTCAAACATCTACCATACTAACCAAGTAGGCAATAACTCTGGCCTTCTTATCACGGACCGGCCGTCCACGAGAGTCCGTTGTGCGCCTGGAGGGCCATCGTCGCTTGGATTTCTGTTTGGTGATGAGGATGCCTAACGTGCAAGTGCAACTCTACAAGACCATAGCAGTGTTGTTATGACTGTACACCTATCCTTTGCATCCATGGGGTGGAGCAAGATTTGGCCCAAGTCTTGGAGACTTGGACCGGGGTATGTCTTGGGTTGTGCCTCTGTATCTTCAGATATTTACGTTTATTCCCAACAATACTTGTGCTCCATGTCCTGGTTTTAGGGATCTAGNTTAATCTATGTACGTACGTGTGTGGAAAAGGTCTCCGCCGTATGGTGTGAGGATGCGTGCTAATTGCTTTATCGGGGGGGGGCATGGTTTTTGGATCTTTGGTTCGGCCTGGTATTTGGTGCATGGCTATTTGACATTATTGGTGGAGAATGGTTGNCATCGAGGGCATAAGNTGGATTTATATATGGGACTAGNAATTTATGGTTGGGATGATC]
[+] EMBL CA764361 [AGGGGGAGCGCCGAGAGGAAGAAGATGAGTAGAGCCTGTAGAGGAGAGAGCAGTGGCGGTGGCCGGAGCTCTCTGGGCTACCTCTTCGAGCCGGAGCCGGAGGATATCATTCCGGATCACTCGACTAAATCCGTTCAAGGAACCAACAAGGCCCCAAAAGGCAATATTGTTCTTGGGGACAAGATGGCCAGCGACGAAGCAAATCAAGAACACCAGGCTGCTGCTCCTCTGAAGAAAGAAGACTCCAACCCAATAGTATCTAGCCGATCTGCTTCAAACATCTACCATACTAACCAAGTAGGCAATAACTCTGGCCTTCTTATCACGGACCGGCCGTCCACGAGAGTCCGTTGTGCGCCTGGAGGGCCATCGTCGCTTGGATTTCTGTTTGGTGATGAGGATGCCTAACGTGCAAGTGCAACTCTACAAGACCATAGCAGTGTTGTTATGACTGTACACCTATCCTTTGCATCCATGGGGTGGAGCAAGATTTGGCCCAAGTCTTGGAGACTTGGACCGGGGTATGTCTTGGGTTGTGCCTCTGTATCTTCAGATATTTACGTTTATTCCCAACAATACTTGTGCTCCATGTCCTGGTTTTAGGGATCTAGNTTAATCTATGTACGTACGTGTGTGGAAAAGGTCTCCGCCGTATGGTGTGAGGATGCGTGCTAATTGCTTTATCGGGGGGGGGCATGGTTTTTGGATCTTTGGTTCGGCCTGGTATTTGGTGCATGGCTATTTGACATTATTGGTGGAGAATGGTTGNCATCGAGGGCATAAGNTGGATTTATATATGGGACTAGNAATTTATGGTTGGGATGATC]
consensusID : consensus_2487#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 682 fasta sequence
[ACAAGGCCCCAAAAAGGCAATATTTGTCTTTGGGACCATAAGACCAAGCGGCGAAGCCAATCAAGAACCCCAGGCTGCTGCTCCTCTGAAGGAAGAAGACTCCAACCCAATAGATCTAACCGATTTGCTTCAAACATCTACCATACTAANCAAGTAGGCAATAACTCTGGCCTTCTTATCACGGACCGGCCGTCCACGAGAGTCCGTTGTGCGCCTGGAGGGCCATCGTCGCTTGGATTTCTGTTTGGTGATGAGGATGCCTAACGTGCAAGTGCAACTCTACAAGACCATAGCAGTGTTGTTATGACTGTACACCTATCCTTTGCATCCATGGGGTGGAGCAAGATTTGGCCCAAGTCTTGGAGACTTGGACCGGGGTATGTCTTGGGTTGTGCCTCTGTATCTTCAGATATTTACGTTTATTCCCAACAATACTTGTGCTCCATGTCCTGGTTTTAGGGATCTAGTTTAATTTATGTACGTACGTGTGTGGAAAAGGTTTCCGCCGTATGGTGTGAGGATGCGTGCTAATTGCTTTATCGTGTGTGTGCATGTTTTTGTATCTTTGTTTCGGCCTGTTATTTGTTGCATGGCTATTTGACATTATTGTTGTAAATTGTTGCCATCGAGGGCATAAGTTGTATTTATATATGTGACTAGTAATTTAAAAAAAAAAAAAAAA]
[-] EMBL CA762642 [ACAAGGCCCCAAAAAGGCAATATTTGTCTTTGGGACCATAAGACCAAGCGGCGAAGCCAATCAAGAACCCCAGGCTGCTGCTCCTCTGAAGGAAGAAGACTCCAACCCAATAGATCTAACCGATTTGCTTCAAACATCTACCATACTAANCAAGTAGGCAATAACTCTGGCCTTCTTATCACGGACCGGCCGTCCACGAGAGTCCGTTGTGCGCCTGGAGGGCCATCGTCGCTTGGATTTCTGTTTGGTGATGAGGATGCCTAACGTGCAAGTGCAACTCTACAAGACCATAGCAGTGTTGTTATGACTGTACACCTATCCTTTGCATCCATGGGGTGGAGCAAGATTTGGCCCAAGTCTTGGAGACTTGGACCGGGGTATGTCTTGGGTTGTGCCTCTGTATCTTCAGATATTTACGTTTATTCCCAACAATACTTGTGCTCCATGTCCTGGTTTTAGGGATCTAGTTTAATTTATGTACGTACGTGTGTGGAAAAGGTTTCCGCCGTATGGTGTGAGGATGCGTGCTAATTGCTTTATCGTGTGTGTGCATGTTTTTGTATCTTTGTTTCGGCCTGTTATTTGTTGCATGGCTATTTGACATTATTGTTGTAAATTGTTGCCATCGAGGGCATAAGTTGTATTTATATATGTGACTAGTAATTTAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2487#0 AGGGGGAGCGCCGAGAGGAAGAAGATGAGTAGAGCCTGTAGAGGAGAGAGCAGTGGCGGT 60
consensus_2487#1 ------------------------------------------------------------
consensus_2487#0 GGCCGGAGCTCTCTGGGCTACCTCTTCGAGCCGGAGCCGGAGGATATCATTCCGGATCAC 120
consensus_2487#1 ------------------------------------------------------------
consensus_2487#0 TCGACTAAATCCGTTCAAGGAACCAACAAGGCCCCAAAA-GGCAATATTGTTCTTGGGGA 179
consensus_2487#1 -------------------------ACAAGGCCCCAAAAAGGCAATATTTGTCTTTGGGA 35
************** ********* **** ****
consensus_2487#0 CAAGATGGCCA-GCGACGAAGCAAATCAAGAACACCAGGCTGCTGCTCCTCTGAAGAAAG 238
consensus_2487#1 CCATAAGACCAAGCGGCGAAGCCAATCAAGAACCCCAGGCTGCTGCTCCTCTGAAGGAAG 95
* * * * *** *** ****** ********** ********************** ***
consensus_2487#0 AAGACTCCAACCCAATAGTATCTAGCCGATCTGCTTCAAACATCTACCATACTAACCAAG 298
consensus_2487#1 AAGACTCCAACCCAATAG-ATCTAACCGATTTGCTTCAAACATCTACCATACTAANCAAG 154
****************** ***** ***** ************************ ****
consensus_2487#0 TAGGCAATAACTCTGGCCTTCTTATCACGGACCGGCCGTCCACGAGAGTCCGTTGTGCGC 358
consensus_2487#1 TAGGCAATAACTCTGGCCTTCTTATCACGGACCGGCCGTCCACGAGAGTCCGTTGTGCGC 214
************************************************************
consensus_2487#0 CTGGAGGGCCATCGTCGCTTGGATTTCTGTTTGGTGATGAGGATGCCTAACGTGCAAGTG 418
consensus_2487#1 CTGGAGGGCCATCGTCGCTTGGATTTCTGTTTGGTGATGAGGATGCCTAACGTGCAAGTG 274
************************************************************
consensus_2487#0 CAACTCTACAAGACCATAGCAGTGTTGTTATGACTGTACACCTATCCTTTGCATCCATGG 478
consensus_2487#1 CAACTCTACAAGACCATAGCAGTGTTGTTATGACTGTACACCTATCCTTTGCATCCATGG 334
************************************************************
consensus_2487#0 GGTGGAGCAAGATTTGGCCCAAGTCTTGGAGACTTGGACCGGGGTATGTCTTGGGTTGTG 538
consensus_2487#1 GGTGGAGCAAGATTTGGCCCAAGTCTTGGAGACTTGGACCGGGGTATGTCTTGGGTTGTG 394
************************************************************
consensus_2487#0 CCTCTGTATCTTCAGATATTTACGTTTATTCCCAACAATACTTGTGCTCCATGTCCTGGT 598
consensus_2487#1 CCTCTGTATCTTCAGATATTTACGTTTATTCCCAACAATACTTGTGCTCCATGTCCTGGT 454
************************************************************
consensus_2487#0 TTTAGGGATCTAGNTTAATCTATGTACGTACGTGTGTGGAAAAGGTCTCCGCCGTATGGT 658
consensus_2487#1 TTTAGGGATCTAGTTTAATTTATGTACGTACGTGTGTGGAAAAGGTTTCCGCCGTATGGT 514
************* ***** ************************** *************
consensus_2487#0 GTGAGGATGCGTGCTAATTGCTTTATCGGGGGGGGGCATGGTTTTTGGATCTTTGGTTCG 718
consensus_2487#1 GTGAGGATGCGTGCTAATTGCTTTATCGTGTGTGTGCATG-TTTTTGTATCTTTGTTTCG 573
**************************** * * * ***** ****** ******* ****
consensus_2487#0 GCCTGGTATTTGGTGCATGGCTATTTGACATTATTGGTGGAGAATGGTTGNCATCGAGGG 778
consensus_2487#1 GCCTGTTATTTGTTGCATGGCTATTTGACATTATTGTTGTA-AATTGTTGCCATCGAGGG 632
***** ****** *********************** ** * *** **** *********
consensus_2487#0 CATAAGNTGGATTTATATATGGGACTAGNAATTTATGGTTGGGATGATC- 827
consensus_2487#1 CATAAGTTGTATTTATATATGTGACTAGTAATTTAAAAAAAAAAAAAAAA 682
****** ** *********** ****** ****** * *
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||