These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_249#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 656 fasta sequence [TCCTCTCCGCTCCCACATCAGTCACCGCCGGTTTCGCTCCTCCTCCGGTTCGCTCCCACGCCCGCCACCGCCACCACCCGCCCTTCCTCCTCCGCTCTGCTCACACCTGCCGCCGCTACCGCGCGCATCTCCTTCCTCCAGATCCAGCCACCAGCATCCTCTCCTCCCTCCCCATACACAGGCGATGGCGGCTCGCGCAGGTGGTGGCAGCGGCTCCGGCAGTGGTGGTGGTGGCTCGCGCAGGTGGTGACCGTGATGGGAGGTGGGCGCGCGACTACGACGGGAGGCGGTCGTCGGGGGGTTCGGCGATGGCGACGGGATGAGTCGTCGGGGGACGCGGCGGCAACGGGACGGCAACGGTGACAGGGGCGCGGCGAGCTCCTCCTCCCCCTCCACCTCCCCCTCCCACGGTCCCGCTGGCGGCTGGGCTTCCCAGATCCGGTGCTGTGGGGCTTGGTGCGGCGGGAGGACCTCGGTGGCAGTGATGCTCGGCGATGGGGCTCCGGTGCTGCTCGGTCGGCGACGGCGACGACGACCTCCTTCCTCTCTCCTGTTGATGCTGTTTTTCTTTTTTTTTTTTCATGTTCAAAATGCTTGTATGCCGTGTTCACTTGCATGTTGATTGAATCTAATGAACTTTGGATGAGGATTTGAAT] [+] EMBL AK072876 [TCCTCTCCGCTCCCACATCAGTCACCGCCGGTTTCGCTCCTCCTCCGGTTCGCTCCCACGCCCGCCACCGCCACCACCCGCCCTTCCTCCTCCGCTCTGCTCACACCTGCCGCCGCTACCGCGCGCATCTCCTTCCTCCAGATCCAGCCACCAGCATCCTCTCCTCCCTCCCCATACACAGGCGATGGCGGCTCGCGCAGGTGGTGGCAGCGGCTCCGGCAGTGGTGGTGGTGGCTCGCGCAGGTGGTGACCGTGATGGGAGGTGGGCGCGCGACTACGACGGGAGGCGGTCGTCGGGGGGTTCGGCGATGGCGACGGGATGAGTCGTCGGGGGACGCGGCGGCAACGGGACGGCAACGGTGACAGGGGCGCGGCGAGCTCCTCCTCCCCCTCCACCTCCCCCTCCCACGGTCCCGCTGGCGGCTGGGCTTCCCAGATCCGGTGCTGTGGGGCTTGGTGCGGCGGGAGGACCTCGGTGGCAGTGATGCTCGGCGATGGGGCTCCGGTGCTGCTCGGTCGGCGACGGCGACGACGACCTCCTTCCTCTCTCCTGTTGATGCTGTTTTTCTTTTTTTTTTTTCATGTTCAAAATGCTTGTATGCCGTGTTCACTTGCATGTTGATTGAATCTAATGAACTTTGGATGAGGATTTGAAT] consensusID : consensus_249#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 232 fasta sequence [AGGACCTCGGTGGCAGTGATGCTCGGCGATGGGGCTCCGGTGCTGCTCGGTCGGCGACGGCGACGACGACCTCCTTCCTCTCTCCTGTTGATGCTGTTTTTCTTTTTTTTTTTTCATGTTCAAAATGCTTGTATGCCGTGTTCACTTGCATGTTGATTGAATCTAATGAACTTTGGATGAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCTTGCCGTTACGTACCGTAT] [+] EMBL CF328876 [AGGACCTCGGTGGCAGTGATGCTCGGCGATGGGGCTCCGGTGCTGCTCGGTCGGCGACGGCGACGACGACCTCCTTCCTCTCTCCTGTTGATGCTGTTTTTCTTTTTTTTTTTTCATGTTCAAAATGCTTGTATGCCGTGTTCACTTGCATGTTGATTGAATCTAATGAACTTTGGATGAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCTTGCCGTTACGTACCGTAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_249#0 TCCTCTCCGCTCCCACATCAGTCACCGCCGGTTTCGCTCCTCCTCCGGTTCGCTCCCACG 60 consensus_249#1 ------------------------------------------------------------ consensus_249#0 CCCGCCACCGCCACCACCCGCCCTTCCTCCTCCGCTCTGCTCACACCTGCCGCCGCTACC 120 consensus_249#1 ------------------------------------------------------------ consensus_249#0 GCGCGCATCTCCTTCCTCCAGATCCAGCCACCAGCATCCTCTCCTCCCTCCCCATACACA 180 consensus_249#1 ------------------------------------------------------------ consensus_249#0 GGCGATGGCGGCTCGCGCAGGTGGTGGCAGCGGCTCCGGCAGTGGTGGTGGTGGCTCGCG 240 consensus_249#1 ------------------------------------------------------------ consensus_249#0 CAGGTGGTGACCGTGATGGGAGGTGGGCGCGCGACTACGACGGGAGGCGGTCGTCGGGGG 300 consensus_249#1 ------------------------------------------------------------ consensus_249#0 GTTCGGCGATGGCGACGGGATGAGTCGTCGGGGGACGCGGCGGCAACGGGACGGCAACGG 360 consensus_249#1 ------------------------------------------------------------ consensus_249#0 TGACAGGGGCGCGGCGAGCTCCTCCTCCCCCTCCACCTCCCCCTCCCACGGTCCCGCTGG 420 consensus_249#1 ------------------------------------------------------------ consensus_249#0 CGGCTGGGCTTCCCAGATCCGGTGCTGTGGGGCTTGGTGCGGCGGGAGGACCTCGGTGGC 480 consensus_249#1 ----------------------------------------------AGGACCTCGGTGGC 14 ************** consensus_249#0 AGTGATGCTCGGCGATGGGGCTCCGGTGCTGCTCGGTCGGCGACGGCGACGACGACCTCC 540 consensus_249#1 AGTGATGCTCGGCGATGGGGCTCCGGTGCTGCTCGGTCGGCGACGGCGACGACGACCTCC 74 ************************************************************ consensus_249#0 TTCCTCTCTCCTGTTGATGCTGTTTTTCTTTTTTTTTTTTCATGTTCAAAATGCTTGTAT 600 consensus_249#1 TTCCTCTCTCCTGTTGATGCTGTTTTTCTTTTTTTTTTTTCATGTTCAAAATGCTTGTAT 134 ************************************************************ consensus_249#0 GCCGTGTTCACTTGCATGTTGATTGAATCTAATGAACTTTGGATGAGGATTTGAAT---- 656 consensus_249#1 GCCGTGTTCACTTGCATGTTGATTGAATCTAATGAACTTTGGATGAAAAAAAAAAAAAAA 194 ********************************************** * ** consensus_249#0 -------------------------------------- consensus_249#1 AAAAAAAAAAACCCCTGTCTTGCCGTTACGTACCGTAT 232 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||