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Oryza sativa
cluster # 249 cluster # 249       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_249#0 length = 656 sequences # 1  
consensus_249#1 length = 232 sequences # 1  

consensusID : consensus_249#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 656
fasta sequence
                              [TCCTCTCCGCTCCCACATCAGTCACCGCCGGTTTCGCTCCTCCTCCGGTTCGCTCCCACGCCCGCCACCGCCACCACCCGCCCTTCCTCCTCCGCTCTGCTCACACCTGCCGCCGCTACCGCGCGCATCTCCTTCCTCCAGATCCAGCCACCAGCATCCTCTCCTCCCTCCCCATACACAGGCGATGGCGGCTCGCGCAGGTGGTGGCAGCGGCTCCGGCAGTGGTGGTGGTGGCTCGCGCAGGTGGTGACCGTGATGGGAGGTGGGCGCGCGACTACGACGGGAGGCGGTCGTCGGGGGGTTCGGCGATGGCGACGGGATGAGTCGTCGGGGGACGCGGCGGCAACGGGACGGCAACGGTGACAGGGGCGCGGCGAGCTCCTCCTCCCCCTCCACCTCCCCCTCCCACGGTCCCGCTGGCGGCTGGGCTTCCCAGATCCGGTGCTGTGGGGCTTGGTGCGGCGGGAGGACCTCGGTGGCAGTGATGCTCGGCGATGGGGCTCCGGTGCTGCTCGGTCGGCGACGGCGACGACGACCTCCTTCCTCTCTCCTGTTGATGCTGTTTTTCTTTTTTTTTTTTCATGTTCAAAATGCTTGTATGCCGTGTTCACTTGCATGTTGATTGAATCTAATGAACTTTGGATGAGGATTTGAAT]

[+] EMBL AK072876             [TCCTCTCCGCTCCCACATCAGTCACCGCCGGTTTCGCTCCTCCTCCGGTTCGCTCCCACGCCCGCCACCGCCACCACCCGCCCTTCCTCCTCCGCTCTGCTCACACCTGCCGCCGCTACCGCGCGCATCTCCTTCCTCCAGATCCAGCCACCAGCATCCTCTCCTCCCTCCCCATACACAGGCGATGGCGGCTCGCGCAGGTGGTGGCAGCGGCTCCGGCAGTGGTGGTGGTGGCTCGCGCAGGTGGTGACCGTGATGGGAGGTGGGCGCGCGACTACGACGGGAGGCGGTCGTCGGGGGGTTCGGCGATGGCGACGGGATGAGTCGTCGGGGGACGCGGCGGCAACGGGACGGCAACGGTGACAGGGGCGCGGCGAGCTCCTCCTCCCCCTCCACCTCCCCCTCCCACGGTCCCGCTGGCGGCTGGGCTTCCCAGATCCGGTGCTGTGGGGCTTGGTGCGGCGGGAGGACCTCGGTGGCAGTGATGCTCGGCGATGGGGCTCCGGTGCTGCTCGGTCGGCGACGGCGACGACGACCTCCTTCCTCTCTCCTGTTGATGCTGTTTTTCTTTTTTTTTTTTCATGTTCAAAATGCTTGTATGCCGTGTTCACTTGCATGTTGATTGAATCTAATGAACTTTGGATGAGGATTTGAAT]


>consensus_249#0 TCCTCTCCGCTCCCACATCAGTCACCGCCGGTTTCGCTCCTCCTCCGGTTCGCTCCCACG CCCGCCACCGCCACCACCCGCCCTTCCTCCTCCGCTCTGCTCACACCTGCCGCCGCTACC GCGCGCATCTCCTTCCTCCAGATCCAGCCACCAGCATCCTCTCCTCCCTCCCCATACACA GGCGATGGCGGCTCGCGCAGGTGGTGGCAGCGGCTCCGGCAGTGGTGGTGGTGGCTCGCG CAGGTGGTGACCGTGATGGGAGGTGGGCGCGCGACTACGACGGGAGGCGGTCGTCGGGGG GTTCGGCGATGGCGACGGGATGAGTCGTCGGGGGACGCGGCGGCAACGGGACGGCAACGG TGACAGGGGCGCGGCGAGCTCCTCCTCCCCCTCCACCTCCCCCTCCCACGGTCCCGCTGG CGGCTGGGCTTCCCAGATCCGGTGCTGTGGGGCTTGGTGCGGCGGGAGGACCTCGGTGGC AGTGATGCTCGGCGATGGGGCTCCGGTGCTGCTCGGTCGGCGACGGCGACGACGACCTCC TTCCTCTCTCCTGTTGATGCTGTTTTTCTTTTTTTTTTTTCATGTTCAAAATGCTTGTAT GCCGTGTTCACTTGCATGTTGATTGAATCTAATGAACTTTGGATGAGGATTTGAAT



consensusID : consensus_249#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 232
fasta sequence
                              [AGGACCTCGGTGGCAGTGATGCTCGGCGATGGGGCTCCGGTGCTGCTCGGTCGGCGACGGCGACGACGACCTCCTTCCTCTCTCCTGTTGATGCTGTTTTTCTTTTTTTTTTTTCATGTTCAAAATGCTTGTATGCCGTGTTCACTTGCATGTTGATTGAATCTAATGAACTTTGGATGAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCTTGCCGTTACGTACCGTAT]

[+] EMBL CF328876             [AGGACCTCGGTGGCAGTGATGCTCGGCGATGGGGCTCCGGTGCTGCTCGGTCGGCGACGGCGACGACGACCTCCTTCCTCTCTCCTGTTGATGCTGTTTTTCTTTTTTTTTTTTCATGTTCAAAATGCTTGTATGCCGTGTTCACTTGCATGTTGATTGAATCTAATGAACTTTGGATGAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCTTGCCGTTACGTACCGTAT]


>consensus_249#1 AGGACCTCGGTGGCAGTGATGCTCGGCGATGGGGCTCCGGTGCTGCTCGGTCGGCGACGG CGACGACGACCTCCTTCCTCTCTCCTGTTGATGCTGTTTTTCTTTTTTTTTTTTCATGTT CAAAATGCTTGTATGCCGTGTTCACTTGCATGTTGATTGAATCTAATGAACTTTGGATGA AAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCTTGCCGTTACGTACCGTAT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_249#0      TCCTCTCCGCTCCCACATCAGTCACCGCCGGTTTCGCTCCTCCTCCGGTTCGCTCCCACG 60
consensus_249#1      ------------------------------------------------------------
                                                                                 

consensus_249#0      CCCGCCACCGCCACCACCCGCCCTTCCTCCTCCGCTCTGCTCACACCTGCCGCCGCTACC 120
consensus_249#1      ------------------------------------------------------------
                                                                                 

consensus_249#0      GCGCGCATCTCCTTCCTCCAGATCCAGCCACCAGCATCCTCTCCTCCCTCCCCATACACA 180
consensus_249#1      ------------------------------------------------------------
                                                                                 

consensus_249#0      GGCGATGGCGGCTCGCGCAGGTGGTGGCAGCGGCTCCGGCAGTGGTGGTGGTGGCTCGCG 240
consensus_249#1      ------------------------------------------------------------
                                                                                 

consensus_249#0      CAGGTGGTGACCGTGATGGGAGGTGGGCGCGCGACTACGACGGGAGGCGGTCGTCGGGGG 300
consensus_249#1      ------------------------------------------------------------
                                                                                 

consensus_249#0      GTTCGGCGATGGCGACGGGATGAGTCGTCGGGGGACGCGGCGGCAACGGGACGGCAACGG 360
consensus_249#1      ------------------------------------------------------------
                                                                                 

consensus_249#0      TGACAGGGGCGCGGCGAGCTCCTCCTCCCCCTCCACCTCCCCCTCCCACGGTCCCGCTGG 420
consensus_249#1      ------------------------------------------------------------
                                                                                 

consensus_249#0      CGGCTGGGCTTCCCAGATCCGGTGCTGTGGGGCTTGGTGCGGCGGGAGGACCTCGGTGGC 480
consensus_249#1      ----------------------------------------------AGGACCTCGGTGGC 14
                                                                   **************

consensus_249#0      AGTGATGCTCGGCGATGGGGCTCCGGTGCTGCTCGGTCGGCGACGGCGACGACGACCTCC 540
consensus_249#1      AGTGATGCTCGGCGATGGGGCTCCGGTGCTGCTCGGTCGGCGACGGCGACGACGACCTCC 74
                     ************************************************************

consensus_249#0      TTCCTCTCTCCTGTTGATGCTGTTTTTCTTTTTTTTTTTTCATGTTCAAAATGCTTGTAT 600
consensus_249#1      TTCCTCTCTCCTGTTGATGCTGTTTTTCTTTTTTTTTTTTCATGTTCAAAATGCTTGTAT 134
                     ************************************************************

consensus_249#0      GCCGTGTTCACTTGCATGTTGATTGAATCTAATGAACTTTGGATGAGGATTTGAAT---- 656
consensus_249#1      GCCGTGTTCACTTGCATGTTGATTGAATCTAATGAACTTTGGATGAAAAAAAAAAAAAAA 194
                     **********************************************  *    **     

consensus_249#0      --------------------------------------
consensus_249#1      AAAAAAAAAAACCCCTGTCTTGCCGTTACGTACCGTAT 232
                                                           




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)