These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2495#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 516 fasta sequence [CACCATATACTTCCGTCTGCGGCTTTCCCGAACCCACTTGCAGGCATCGGCCCAGAAGGTGGACAATCCGCGTCGCCGCACTCCGGGCCACGTCCGTCTTGCTGCCCACTTCCATGGCGCCACAGCCCCGGCACTCACAGGCTCCGAGGCACCACGTCGCACCCCGGTGGTGCAGCGGCTCAGTCCAGGCCAACGCACCGCACAGCCCCAGTCGCCGCACGGGCAACGCCCCCAGTTGCCAGCTTCCGTCTTCACAGGCCATCCCGTGTCCAGTGCTCTCCGTCGCCAGCCGCTGGCCTGAAGTTGATCTATTGGGGGGTGTGCGTTACGTGCCCTCCCGGAGATGGTGTCGGTTAGGATGGCGCGCGCCCTGTGTATTGTGAGCTTTTGCGTTTGGACCCGTGTTCATTTTCTCTGTTTCCCCCCTCCTTTCGTGTCGTAATTAATTAAACTAGTATGATCCTGTGGATCTTCCTCCAACCTTCAGAATCTCTCCCGGTTGTCAACCTCAAAAAA] [+] EMBL BI798090 [CACCATATACTTCCGTCTGCGGCTTTCCCGAACCCACTTGCAGGCATCGGCCCAGAAGGTGGACAATCCGCGTCGCCGCACTCCGGGCCACGTCCGTCTTGCTGCCCACTTCCATGGCGCCACAGCCCCGGCACTCACAGGCTCCGAGGCACCACGTCGCACCCCGGTGGTGCAGCGGCTCAGTCCAGGCCAACGCACCGCACAGCCCCAGTCGCCGCACGGGCAACGCCCCCAGTTGCCAGCTTCCGTCTTCACAGGCCATCCCGTGTCCAGTGCTCTCCGTCGCCAGCCGCTGGCCTGAAGTTGATCTATTGGGGGGTGTGCGTTACGTGCCCTCCCGGAGATGGTGTCGGTTAGGATGGCGCGCGCCCTGTGTATTGTGAGCTTTTGCGTTTGGACCCGTGTTCATTTTCTCTGTTTCCCCCCTCCTTTCGTGTCGTAATTAATTAAACTAGTATGATCCTGTGGATCTTCCTCCAACCTTCAGAATCTCTCCCGGTTGTCAACCTCAAAAAA] consensusID : consensus_2495#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 485 fasta sequence [CACGCCACGGGCCACCAGTACTTCCTCTGCGGCTTCCCGAACCACTGCGGCATCGCCAGAAGGTGGACATCCGCGTCGCCGCCTCCGGCCACTCCTCTGCTGCCCCTTCCATGGCGCCCGCCCCGGCCTCCGGCTCCGAGGCACCCGTCGCCCCCGGTGGTGCGCGGCTCGTCCGGCCACCAGCCCCGCCCCGTCGCCGCACGGCAACGCCGCCGTTGCCGCTCCGTCTTCACGGCCATCGCCGTGTCCGTGCTCTCCGTCGCCGCCGCTGGCCTGAAGTTGATCTAGTTGGGGGGTGTGCGTACGTGTGTCCGGAGATGGTGTTCGGTTAGGATGGCGCGCGCCCTGTGTATTGTGAGCTTTTGCGTTTGGACCGTGTTCATTTTCTCTTTTGCCCCCTCCTTTCGTGTCGTAATTAATTAAACTAGTATGATCCTGTGGATCTTGCTGCATTTGAGGATCTCTGCCGGTTGTCAAAAAAAAAA] [+] EMBL BI801663 [CACGCCACGGGCCACCAGTACTTCCTCTGCGGCTTCCCGAACCACTGCGGCATCGCCAGAAGGTGGACATCCGCGTCGCCGCCTCCGGCCACTCCTCTGCTGCCCCTTCCATGGCGCCCGCCCCGGCCTCCGGCTCCGAGGCACCCGTCGCCCCCGGTGGTGCGCGGCTCGTCCGGCCACCAGCCCCGCCCCGTCGCCGCACGGCAACGCCGCCGTTGCCGCTCCGTCTTCACGGCCATCGCCGTGTCCGTGCTCTCCGTCGCCGCCGCTGGCCTGAAGTTGATCTAGTTGGGGGGTGTGCGTACGTGTGTCCGGAGATGGTGTTCGGTTAGGATGGCGCGCGCCCTGTGTATTGTGAGCTTTTGCGTTTGGACCGTGTTCATTTTCTCTTTTGCCCCCTCCTTTCGTGTCGTAATTAATTAAACTAGTATGATCCTGTGGATCTTGCTGCATTTGAGGATCTCTGCCGGTTGTCAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2495#0 ------------CACCATATACTTCCGTCTGCGGCTTTCCCGAACCCACTTGCAGGCATC 48 consensus_2495#1 CACGCCACGGGCCACCA-GTACTTCC-TCTGCGGCTT-CCCGAACC--ACTGC-GGCATC 54 ***** ******* ********** ******** *** ****** consensus_2495#0 GGCCCAGAAGGTGGACAATCCGCGTCGCCGCACTCCGGGCCACGTCCGTCTTGCTGCCCA 108 consensus_2495#1 G--CCAGAAGGTGGACA-TCCGCGTCGCCGC-CTCCGG-CCACTCCT---CTGCTGCCC- 105 * ************** ************* ****** **** * ******** consensus_2495#0 CTTCCATGGCGCCACAGCCCCGGCACTCACAGGCTCCGAGGCACCACGTCGCACCCCGGT 168 consensus_2495#1 CTTCCATGGCGCC--CGCCCCGGC---CTCCGGCTCCGAGGCACC-CGTCGC-CCCCGGT 158 ************* ******** * * ************** ****** ******* consensus_2495#0 GGTGCAGCGGCTCAGTCCAGGCCAACGCACCGCACAGCCCCAGTCGCCGCACGGGCAACG 228 consensus_2495#1 GGTGC-GCGGCTC-GTCC-GGCCACCA----GCCCCGCCCC-GTCGCCGCACGG-CAACG 209 ***** ******* **** ***** * ** * ***** ************ ***** consensus_2495#0 CCCCCAGTTGCCAGCTTCCGTCTTCACAGGCCATC-CCGTGTCCAGTGCTCTCCGTCGCC 287 consensus_2495#1 CCGCC-GTTGCCG--CTCCGTCTTCAC-GGCCATCGCCGTGTCC-GTGCTCTCCGTCGCC 264 ** ** ****** *********** ******* ******** *************** consensus_2495#0 AGCCGCTGGCCTGAAGTTGATCTA-TTGGGGGGTGTGCGTTACGTGCCCTCCCGGAGATG 346 consensus_2495#1 -GCCGCTGGCCTGAAGTTGATCTAGTTGGGGGGTGTGCGT-ACGTGTG--TCCGGAGATG 320 *********************** *************** ***** ********* consensus_2495#0 GTGT-CGGTTAGGATGGCGCGCGCCCTGTGTATTGTGAGCTTTTGCGTTTGGACCCGTGT 405 consensus_2495#1 GTGTTCGGTTAGGATGGCGCGCGCCCTGTGTATTGTGAGCTTTTGCGTTTGGACC-GTGT 379 **** ************************************************** **** consensus_2495#0 TCATTTTCTCTGTTTCCCCCCTCCTTTCGTGTCGTAATTAATTAAACTAGTATGATCCTG 465 consensus_2495#1 TCATTTTCTCT-TTTGCCCCCTCCTTTCGTGTCGTAATTAATTAAACTAGTATGATCCTG 438 *********** *** ******************************************** consensus_2495#0 TGGATCTTCCTCCAACCTTCAGAATCTCTCCCGGTTGTCAACCTCAAAAAA 516 consensus_2495#1 TGGATCTTGCTGCA--TTTGAGGATCTCTGCCGGTTGTCAAAAAAAAAA-- 485 ******** ** ** ** ** ****** *********** **** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||