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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2521#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1613 fasta sequence
[ACTTCCACTCGCTGGCGATAGCACCGCACCGGAGCATATGCTCTCCGCAGCCGCCGCCGCCGCCGCCGACGCGAGCTTCCATGGCGGAGCTCCCCGACGAAGAAGACCGCGGCTACGCTCCTGCCTCGCGTCCCCGCCGGCATCCGGTGGAGGAGGAGGAGACTGCCGCGAGTCCGAAAAAGCGAGACGTTTGCTCGTGGAGAGATACCAGGATGGGGTTTCCAAGAGGTATATACTGGATGGAAACTCTAAGCTACAGATTCACCAGGAGAAGAATGAACATATGGCGAACACATTGGAAGAAGAAGAAAAAGAAGAAGCAAATTCTTCGATTCCCCGTGCTATTAAGGATTTTGTACTTCCCGCGGGGTTTCCAGGGTCTGTGTCAGACGATTACCTGGAATATATGCTATGGCAATTACCAACAAATGTAACAGGATGGATCTGTCACACGCTGGTTACATCAACCCTTCTAAAGGCTGTAGGTGTTAGGTCCTTTACAGGAACTTCAGCAGCTGCTTCTGCTGCTGCTATAAGATGGGTATCGAAAGATGGCATAGGGGCTTTTGGACGTCTTCTAATTGGTGGACGATTCGGAACTCTTTTTGATGATGACCCAAAGAAGTGGCGGATGTATGCCGATTTCATTGGAAGTGCTGGAAGCATCTTCGAGCTCATCACTCCGCTCTATCCTGGATACTTCCTCCCACTTGCGTCCTTGGGGAATCTAGCAAAGGCTGTAGGAAGAGGATTTAGGGATCCATCCTTCCGTGTTATCCAAAATCACTTCGCGGAATCTGGAAATTTAGGGGAGGTTGCTGCAAAGGAGGAAGTATGGGAAGTAGGAGCTCAGTTGTTAGGCCTTTCTATCGGTGTATTTATTATGGATACATCAGGTATAAAGTCATCATACCCAACACTTGCTTTGACATGGCTTGGTGTCCGTCTTCTACATCTTTGGTTTCGCTATCAGTCCCTATCAGTTCTCAAATTCCGCACAGTAAGGTAAACTTGAAACGCGCTCGGATTCTCGTGAGATCACACGTTGCAAAGCACACAGTTCCTGATTATGTGACTTGCAACGAGGAGGAGAATATTTTAACATGGGAAAGATTCTTGCATCCACAAATTTCTTTTGGTGTTCCCATGGAGAGAATGCTTGGTGAAGAGGAATCCAGTGACGTGGTGGATAGACTATTGAAGTTGTACAGAAATGAGAAATACATCCTCTTTCTCAATCCGATTGGAACAGGCCGAGCAGCATTTTTTGTTACATTCAAGGAGGCTGCAACGAGCATGTCAGTCCTCAGGAGCCTATGGCAAGCGCATTGGCTTGACAAAAATCAGCTAAGGCAGGATGATGTTTTCTCTTGGCTAGAGGAGAGCGTTCTTGCGTTGGAGCACGGATTCCCTGACTTCCTCAAACAGATGGAAATAGCTGGCTGGGATCAGAACCAGATCATACTGAAGGTGCCAAAAGAACCCATCATGGTGATGGAACACCCTGACCAAGAGGTGTAAGATGACAATGCCAACTAACTAATCCATTCTACTCCCTCCGTGTTTTTTAAATGTAAAGGCGTATTGACTTTTGGACATGGCGTTAGACCATT]
[+] EMBL AK066922 [ACTTCCACTCGCTGGCGATAGCACCGCACCGGAGCATATGCTCTCCGCAGCCGCCGCCGCCGCCGCCGACGCGAGCTTCCATGGCGGAGCTCCCCGACGAAGAAGACCGCGGCTACGCTCCTGCCTCGCGTCCCCGCCGGCATCCGGTGGAGGAGGAGGAGACTGCCGCGAGTCCGAAAAAGCGAGACGTTTGCTCGTGGAGAGATACCAGGATGGGGTTTCCAAGAGGTATATACTGGATGGAAACTCTAAGCTACAGATTCACCAGGAGAAGAATGAACATATGGCGAACACATTGGAAGAAGAAGAAAAAGAAGAAGCAAATTCTTCGATTCCCCGTGCTATTAAGGATTTTGTACTTCCCGCGGGGTTTCCAGGGTCTGTGTCAGACGATTACCTGGAATATATGCTATGGCAATTACCAACAAATGTAACAGGATGGATCTGTCACACGCTGGTTACATCAACCCTTCTAAAGGCTGTAGGTGTTAGGTCCTTTACAGGAACTTCAGCAGCTGCTTCTGCTGCTGCTATAAGATGGGTATCGAAAGATGGCATAGGGGCTTTTGGACGTCTTCTAATTGGTGGACGATTCGGAACTCTTTTTGATGATGACCCAAAGAAGTGGCGGATGTATGCCGATTTCATTGGAAGTGCTGGAAGCATCTTCGAGCTCATCACTCCGCTCTATCCTGGATACTTCCTCCCACTTGCGTCCTTGGGGAATCTAGCAAAGGCTGTAGGAAGAGGATTTAGGGATCCATCCTTCCGTGTTATCCAAAATCACTTCGCGGAATCTGGAAATTTAGGGGAGGTTGCTGCAAAGGAGGAAGTATGGGAAGTAGGAGCTCAGTTGTTAGGCCTTTCTATCGGTGTATTTATTATGGATACATCAGGTATAAAGTCATCATACCCAACACTTGCTTTGACATGGCTTGGTGTCCGTCTTCTACATCTTTGGTTTCGCTATCAGTCCCTATCAGTTCTCAAATTCCGCACAGTAAGGTAAACTTGAAACGCGCTCGGATTCTCGTGAGATCACACGTTGCAAAGCACACAGTTCCTGATTATGTGACTTGCAACGAGGAGGAGAATATTTTAACATGGGAAAGATTCTTGCATCCACAAATTTCTTTTGGTGTTCCCATGGAGAGAATGCTTGGTGAAGAGGAATCCAGTGACGTGGTGGATAGACTATTGAAGTTGTACAGAAATGAGAAATACATCCTCTTTCTCAATCCGATTGGAACAGGCCGAGCAGCATTTTTTGTTACATTCAAGGAGGCTGCAACGAGCATGTCAGTCCTCAGGAGCCTATGGCAAGCGCATTGGCTTGACAAAAATCAGCTAAGGCAGGATGATGTTTTCTCTTGGCTAGAGGAGAGCGTTCTTGCGTTGGAGCACGGATTCCCTGACTTCCTCAAACAGATGGAAATAGCTGGCTGGGATCAGAACCAGATCATACTGAAGGTGCCAAAAGAACCCATCATGGTGATGGAACACCCTGACCAAGAGGTGTAAGATGACAATGCCAACTAACTAATCCATTCTACTCCCTCCGTGTTTTTTAAATGTAAAGGCGTATTGACTTTTGGACATGGCGTTAGACCATT]
consensusID : consensus_2521#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 790 fasta sequence
[CACCGGAGCATATGCTCTCCGCAGCCGCCGCCGCCGCCGCCGACGCGAGCTTCCATGGCGGAGCTCCCCGACGAAGAAGACCGCGGCTACGCTCCTGCCTCGCGTCCCCGCCGGCATCCGGTGGAGGAGGAGGAGACTGCCGCGAGTCCGAGTTCGTCACTGGATTTCGCGGCTCCGTTTCATGCCGCAGTTTTTTTTTTCTTCTTCTTCTTGTTGATAATGAAATTTGTGCGCTTCTTATGCAGAAAAGCGAGACGTTTGCTCGTGGAGAGATACCAGGATGGGGTTTCCAAGAGGTATATACTGGATGGAAACTCTAAGCTACAGATTCACCAGGAGAAGAATGAACATATGGCGAACACATTGGAAGAAGAAGAAAAAGAAGAAGCAAATTCTTCGATTCCCCGTGCTATTAAGGATTTTGTACTTCCCGCGGGGTTTCCAGGGTCTGTGTCAGACGATTACCTGGAATATATGCTATGGCAATTACCAACAAATGTAACAGGATGGATCTGTCACACGCTGGTTACATCAACCCTTCTAAAGGCTGTAGGTGTTGGGTCCTTTACAGGAACTTCAGCAGCTGCTTCTGCTGCTGCTATAAGATGGGTATCGAAAGATGGCATAGGGGCTTTTGGACGTCTTCTAATTGGTACGGTTAATATGTCTGGTCATATTTTCAGAATATAAATACTGTCCAGGAAGGTGGGAAGGTTCATTAATACTTTACATTGTGCAGGAAGGTTTATGAATAATCTATGTTGTTTAAGAAGCTTTGTGAATGATTTCT]
[+] EMBL CB671077 [CACCGGAGCATATGCTCTCCGCAGCCGCCGCCGCCGCCGCCGACGCGAGCTTCCATGGCGGAGCTCCCCGACGAAGAAGACCGCGGCTACGCTCCTGCCTCGCGTCCCCGCCGGCATCCGGTGGAGGAGGAGGAGACTGCCGCGAGTCCGAGTTCGTCACTGGATTTCGCGGCTCCGTTTCATGCCGCAGTTTTTTTTTTCTTCTTCTTCTTGTTGATAATGAAATTTGTGCGCTTCTTATGCAGAAAAGCGAGACGTTTGCTCGTGGAGAGATACCAGGATGGGGTTTCCAAGAGGTATATACTGGATGGAAACTCTAAGCTACAGATTCACCAGGAGAAGAATGAACATATGGCGAACACATTGGAAGAAGAAGAAAAAGAAGAAGCAAATTCTTCGATTCCCCGTGCTATTAAGGATTTTGTACTTCCCGCGGGGTTTCCAGGGTCTGTGTCAGACGATTACCTGGAATATATGCTATGGCAATTACCAACAAATGTAACAGGATGGATCTGTCACACGCTGGTTACATCAACCCTTCTAAAGGCTGTAGGTGTTGGGTCCTTTACAGGAACTTCAGCAGCTGCTTCTGCTGCTGCTATAAGATGGGTATCGAAAGATGGCATAGGGGCTTTTGGACGTCTTCTAATTGGTACGGTTAATATGTCTGGTCATATTTTCAGAATATAAATACTGTCCAGGAAGGTGGGAAGGTTCATTAATACTTTACATTGTGCAGGAAGGTTTATGAATAATCTATGTTGTTTAAGAAGCTTTGTGAATGATTTCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2521#0 ACTTCCACTCGCTGGCGATAGCACCGCACCGGAGCATATGCTCTCCGCAGCCGCCGCCGC 60
consensus_2521#1 --------------------------CACCGGAGCATATGCTCTCCGCAGCCGCCGCCGC 34
**********************************
consensus_2521#0 CGCCGCCGACGCGAGCTTCCATGGCGGAGCTCCCCGACGAAGAAGACCGCGGCTACGCTC 120
consensus_2521#1 CGCCGCCGACGCGAGCTTCCATGGCGGAGCTCCCCGACGAAGAAGACCGCGGCTACGCTC 94
************************************************************
consensus_2521#0 CTGCCTCGCGTCCCCGCCGGCATCCGGTGGAGGAGGAGGAGACTGCCGCGAGTCCGA--- 177
consensus_2521#1 CTGCCTCGCGTCCCCGCCGGCATCCGGTGGAGGAGGAGGAGACTGCCGCGAGTCCGAGTT 154
*********************************************************
consensus_2521#0 ------------------------------------------------------------
consensus_2521#1 CGTCACTGGATTTCGCGGCTCCGTTTCATGCCGCAGTTTTTTTTTTCTTCTTCTTCTTGT 214
consensus_2521#0 -------------------------------AAAAGCGAGACGTTTGCTCGTGGAGAGAT 206
consensus_2521#1 TGATAATGAAATTTGTGCGCTTCTTATGCAGAAAAGCGAGACGTTTGCTCGTGGAGAGAT 274
*****************************
consensus_2521#0 ACCAGGATGGGGTTTCCAAGAGGTATATACTGGATGGAAACTCTAAGCTACAGATTCACC 266
consensus_2521#1 ACCAGGATGGGGTTTCCAAGAGGTATATACTGGATGGAAACTCTAAGCTACAGATTCACC 334
************************************************************
consensus_2521#0 AGGAGAAGAATGAACATATGGCGAACACATTGGAAGAAGAAGAAAAAGAAGAAGCAAATT 326
consensus_2521#1 AGGAGAAGAATGAACATATGGCGAACACATTGGAAGAAGAAGAAAAAGAAGAAGCAAATT 394
************************************************************
consensus_2521#0 CTTCGATTCCCCGTGCTATTAAGGATTTTGTACTTCCCGCGGGGTTTCCAGGGTCTGTGT 386
consensus_2521#1 CTTCGATTCCCCGTGCTATTAAGGATTTTGTACTTCCCGCGGGGTTTCCAGGGTCTGTGT 454
************************************************************
consensus_2521#0 CAGACGATTACCTGGAATATATGCTATGGCAATTACCAACAAATGTAACAGGATGGATCT 446
consensus_2521#1 CAGACGATTACCTGGAATATATGCTATGGCAATTACCAACAAATGTAACAGGATGGATCT 514
************************************************************
consensus_2521#0 GTCACACGCTGGTTACATCAACCCTTCTAAAGGCTGTAGGTGTTAGGTCCTTTACAGGAA 506
consensus_2521#1 GTCACACGCTGGTTACATCAACCCTTCTAAAGGCTGTAGGTGTTGGGTCCTTTACAGGAA 574
******************************************** ***************
consensus_2521#0 CTTCAGCAGCTGCTTCTGCTGCTGCTATAAGATGGGTATCGAAAGATGGCATAGGGGCTT 566
consensus_2521#1 CTTCAGCAGCTGCTTCTGCTGCTGCTATAAGATGGGTATCGAAAGATGGCATAGGGGCTT 634
************************************************************
consensus_2521#0 TTGGACGTCTTCTAATTGGTGGACGATTCGGAACTCTTTTTGATGATGACCCAAAGAAGT 626
consensus_2521#1 TTGGACGTCTTCTAATTGGT--ACGGTT----AATATGTCTGGTCATATTTTCAGAATAT 688
******************** *** ** * * * * ** * ** * * *
consensus_2521#0 GGCGGATGTATGCCGATTTCATTGGAAGTGCTGGAAGCATCTTCGAGCTCATCACTCCGC 686
consensus_2521#1 AA-------ATACTG--TCCA--GGAAG-GTGGGAAGGTTCATTAA------TACTTTAC 730
** * * * ** ***** * ***** ** * * *** *
consensus_2521#0 TCTATCCTGGATACTTCCTC--CCACTTGCGTC-CTTGGGGAATCTAGCAAAGGCTGTAG 743
consensus_2521#1 ATTGTGCAGGAAGGTTTATGAATAATCTATGTTGTTTAAGAAGCTTTGTGAATGATTTCT 790
* * * *** ** * * * ** ** * * * * ** * * *
consensus_2521#0 GAAGAGGATTTAGGGATCCATCCTTCCGTGTTATCCAAAATCACTTCGCGGAATCTGGAA 803
consensus_2521#1 ------------------------------------------------------------
consensus_2521#0 ATTTAGGGGAGGTTGCTGCAAAGGAGGAAGTATGGGAAGTAGGAGCTCAGTTGTTAGGCC 863
consensus_2521#1 ------------------------------------------------------------
consensus_2521#0 TTTCTATCGGTGTATTTATTATGGATACATCAGGTATAAAGTCATCATACCCAACACTTG 923
consensus_2521#1 ------------------------------------------------------------
consensus_2521#0 CTTTGACATGGCTTGGTGTCCGTCTTCTACATCTTTGGTTTCGCTATCAGTCCCTATCAG 983
consensus_2521#1 ------------------------------------------------------------
consensus_2521#0 TTCTCAAATTCCGCACAGTAAGGTAAACTTGAAACGCGCTCGGATTCTCGTGAGATCACA 1043
consensus_2521#1 ------------------------------------------------------------
consensus_2521#0 CGTTGCAAAGCACACAGTTCCTGATTATGTGACTTGCAACGAGGAGGAGAATATTTTAAC 1103
consensus_2521#1 ------------------------------------------------------------
consensus_2521#0 ATGGGAAAGATTCTTGCATCCACAAATTTCTTTTGGTGTTCCCATGGAGAGAATGCTTGG 1163
consensus_2521#1 ------------------------------------------------------------
consensus_2521#0 TGAAGAGGAATCCAGTGACGTGGTGGATAGACTATTGAAGTTGTACAGAAATGAGAAATA 1223
consensus_2521#1 ------------------------------------------------------------
consensus_2521#0 CATCCTCTTTCTCAATCCGATTGGAACAGGCCGAGCAGCATTTTTTGTTACATTCAAGGA 1283
consensus_2521#1 ------------------------------------------------------------
consensus_2521#0 GGCTGCAACGAGCATGTCAGTCCTCAGGAGCCTATGGCAAGCGCATTGGCTTGACAAAAA 1343
consensus_2521#1 ------------------------------------------------------------
consensus_2521#0 TCAGCTAAGGCAGGATGATGTTTTCTCTTGGCTAGAGGAGAGCGTTCTTGCGTTGGAGCA 1403
consensus_2521#1 ------------------------------------------------------------
consensus_2521#0 CGGATTCCCTGACTTCCTCAAACAGATGGAAATAGCTGGCTGGGATCAGAACCAGATCAT 1463
consensus_2521#1 ------------------------------------------------------------
consensus_2521#0 ACTGAAGGTGCCAAAAGAACCCATCATGGTGATGGAACACCCTGACCAAGAGGTGTAAGA 1523
consensus_2521#1 ------------------------------------------------------------
consensus_2521#0 TGACAATGCCAACTAACTAATCCATTCTACTCCCTCCGTGTTTTTTAAATGTAAAGGCGT 1583
consensus_2521#1 ------------------------------------------------------------
consensus_2521#0 ATTGACTTTTGGACATGGCGTTAGACCATT 1613
consensus_2521#1 ------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||