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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2534#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1078 fasta sequence
[ATTCGATCACATTTACTCCTACTCGAGATCAAGATCTTGGTGGTACTACTCATCGATTAATTAACTTGTACTCATCGAGACCCTGATACTGATCAATCAATCAAACAATCAGTCAGTGGTTAGTGCTCGTCGTCAGAGATAGCAAAAAGGCGCAGGCAAGAACGAGGAGAGGACGGACAGGCGCCATCAGAAAAGGAAAGAAACGTGAGAGAGAGAGACACAGATCGCGGCGGCGATGGCCGGAGATGGGGAGGATGGCGGCGAGAGGGTGCGGCTGTTCGTCGGCCAGGTGCCACGCAGCATGGCGGAGGAGGACATCCTCGCCGTGGTCCGCGCCGCCGCACGCGCCGACGACGCCACCGTCATCCGCGACCGCGCCACCGGCGCCTCCCGCGGTTGCTGCTTCGTGGTGTGCTCGTCGAGGGAGGAGGCAGACAAGGCCATCGCCGCGTACCACAACAAGTGCACCCTCCCAGGAGCGTCCAGGGCAATGCAGGTAAAATACGCGGACGGCGAGCTGGAACGATTAGCCGCAGAGCAGAAGCTTTTCATTGGCATGCTTCCAAGGGATGTGAAGGAGAATGAAGTTTCTGCATTGTTTTCGCAGTACGGAAATATTAGACAACTGAAGGTACTGAGAAGTCCACAGAAAACAAGAAAAGCTGCAGCCTGTGCTATCCTGGAATTTGGAAGCAAAGAACATGCTAGAGCGGCCATTGAAGCTTTGAATGGCACACGTGTTGTGTTCAATGGTTCAAGTGCGACTTTGGTTGTTAAGTTGGCTGACACTGAAAGGGAAAAGCAAGCTAGAAAGGCACAGAAAGCTCAGGCTCAACCTTCTAAGCCCTTAAGATTTTATCTCTTCCCCCAGCTGCTATCAATATCTGGAGCACCACAGATGAGCTTTCTTCCTCCATATAATGTATTGGATTACAAGGTACCAGGGCATTATGGACACACGAAGAACCCATTGGCATTGTACAGCACTATGTACCCACATGTCAATCAAGGAAATTTACTCCAGGGACTCAACACAAATATATTTCCAGGAACAGATCCTAAAATTTCGAACCTGATT]
[+] EMBL AK100642 [ATTCGATCACATTTACTCCTACTCGAGATCAAGATCTTGGTGGTACTACTCATCGATTAATTAACTTGTACTCATCGAGACCCTGATACTGATCAATCAATCAAACAATCAGTCAGTGGTTAGTGCTCGTCGTCAGAGATAGCAAAAAGGCGCAGGCAAGAACGAGGAGAGGACGGACAGGCGCCATCAGAAAAGGAAAGAAACGTGAGAGAGAGAGACACAGATCGCGGCGGCGATGGCCGGAGATGGGGAGGATGGCGGCGAGAGGGTGCGGCTGTTCGTCGGCCAGGTGCCACGCAGCATGGCGGAGGAGGACATCCTCGCCGTGGTCCGCGCCGCCGCACGCGCCGACGACGCCACCGTCATCCGCGACCGCGCCACCGGCGCCTCCCGCGGTTGCTGCTTCGTGGTGTGCTCGTCGAGGGAGGAGGCAGACAAGGCCATCGCCGCGTACCACAACAAGTGCACCCTCCCAGGAGCGTCCAGGGCAATGCAGGTAAAATACGCGGACGGCGAGCTGGAACGATTAGCCGCAGAGCAGAAGCTTTTCATTGGCATGCTTCCAAGGGATGTGAAGGAGAATGAAGTTTCTGCATTGTTTTCGCAGTACGGAAATATTAGACAACTGAAGGTACTGAGAAGTCCACAGAAAACAAGAAAAGCTGCAGCCTGTGCTATCCTGGAATTTGGAAGCAAAGAACATGCTAGAGCGGCCATTGAAGCTTTGAATGGCACACGTGTTGTGTTCAATGGTTCAAGTGCGACTTTGGTTGTTAAGTTGGCTGACACTGAAAGGGAAAAGCAAGCTAGAAAGGCACAGAAAGCTCAGGCTCAACCTTCTAAGCCCTTAAGATTTTATCTCTTCCCCCAGCTGCTATCAATATCTGGAGCACCACAGATGAGCTTTCTTCCTCCATATAATGTATTGGATTACAAGGTACCAGGGCATTATGGACACACGAAGAACCCATTGGCATTGTACAGCACTATGTACCCACATGTCAATCAAGGAAATTTACTCCAGGGACTCAACACAAATATATTTCCAGGAACAGATCCTAAAATTTCGAACCTGATT]
consensusID : consensus_2534#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 979 fasta sequence
[CCATTGATTTGCTCTTGCCCGTGTGTGAGAAGCAGAAGAAGAAGATGATGAAAATTTGGAATTTATTTGGGTTCTTGCAGGTTGCTGCTTCGTGGTGTGCTCGTCGAGGGAGGAGGCAGACAAGGCCATCGCCGCGTACCACAACAAGTGCACCCTCCCAGGAGCGTCCAGGGCAATGCAGGTAAAATACGCGGACGGCGAGCTGGAACGATTAGCCGCAGAGCAGAAGCTTTTCATTGGCATGCTTCCAAGGGATGTGAAGGAGAATGAAGTTTCTGCATTGTTTTCGCAGTACGGAAATATTAGACAACTGAAGGTACTGAGAAGTCCACAGAAAACAAGAAAAGCTGCAGCCTGTGCTATCCTGGAATTTGGAAGCAAAGAACATGCTAGAGCGGCCATTGAAGCTTTGAATGGCACACGTGTTGTGTTCAATGGTTCAAGTGCGACTTTGGTTGTTAAGTTGGCTGACACTGAAAGGGAAAAGCAAGCTAGAAAGGCACAGAAAGCTCAGGCTCAACCTTCTAAGCCCTTAAGATTTTATCTCTTCCCCCAGCTGCTATCAATATCTGGAGCACCACAGATGAGCTTTCTTCCTCCATATAATGTATTGGATTACAAGACTGAAGGAACAACGGATCCAGAATTGAAAGATCTAATGAAGATGACAAACGACAAACTTGAGATGCTAGTGACTGAGCTCAAGAGCGTGGTGAACTTATTAGAGAATCGAGTTACATATAATGATCCAATACAGCCAATTCAGCATTCTCTCTTACCTGTAGAGCATGACGAGAAGCAATATAAGCCTAATGAGTGTGATTCCAAAACGTTAGAGGTACCAGGGCATTATGGACACACGAAGAACCCATTGGCATTGTACAGCACTATGTACCCACATGTCAATCAAGGAAATTTACTCCAGGGACTCAACACAAATATATTTCCAGGAACAGATCCTAAAATTTCGAACCTGATT]
[+] EMBL AK070340 [CCATTGATTTGCTCTTGCCCGTGTGTGAGAAGCAGAAGAAGAAGATGATGAAAATTTGGAATTTATTTGGGTTCTTGCAGGTTGCTGCTTCGTGGTGTGCTCGTCGAGGGAGGAGGCAGACAAGGCCATCGCCGCGTACCACAACAAGTGCACCCTCCCAGGAGCGTCCAGGGCAATGCAGGTAAAATACGCGGACGGCGAGCTGGAACGATTAGCCGCAGAGCAGAAGCTTTTCATTGGCATGCTTCCAAGGGATGTGAAGGAGAATGAAGTTTCTGCATTGTTTTCGCAGTACGGAAATATTAGACAACTGAAGGTACTGAGAAGTCCACAGAAAACAAGAAAAGCTGCAGCCTGTGCTATCCTGGAATTTGGAAGCAAAGAACATGCTAGAGCGGCCATTGAAGCTTTGAATGGCACACGTGTTGTGTTCAATGGTTCAAGTGCGACTTTGGTTGTTAAGTTGGCTGACACTGAAAGGGAAAAGCAAGCTAGAAAGGCACAGAAAGCTCAGGCTCAACCTTCTAAGCCCTTAAGATTTTATCTCTTCCCCCAGCTGCTATCAATATCTGGAGCACCACAGATGAGCTTTCTTCCTCCATATAATGTATTGGATTACAAGACTGAAGGAACAACGGATCCAGAATTGAAAGATCTAATGAAGATGACAAACGACAAACTTGAGATGCTAGTGACTGAGCTCAAGAGCGTGGTGAACTTATTAGAGAATCGAGTTACATATAATGATCCAATACAGCCAATTCAGCATTCTCTCTTACCTGTAGAGCATGACGAGAAGCAATATAAGCCTAATGAGTGTGATTCCAAAACGTTAGAGGTACCAGGGCATTATGGACACACGAAGAACCCATTGGCATTGTACAGCACTATGTACCCACATGTCAATCAAGGAAATTTACTCCAGGGACTCAACACAAATATATTTCCAGGAACAGATCCTAAAATTTCGAACCTGATT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2534#0 ATTCGATCACATTTACTCCTACTCGAGATCAAGATCTTGGTGGTACTACTCATCGATTAA 60
consensus_2534#1 ------------------------------------------------------------
consensus_2534#0 TTAACTTGTACTCATCGAGACCCTGATACTGATCAATCAATCAAACAATCAGTCAGTGGT 120
consensus_2534#1 ------------------------------------------------------------
consensus_2534#0 TAGTGCTCGTCGTCAGAGATAGCAAAAAGGCGCAGGCAAGAACGAGGAGAGGACGGACAG 180
consensus_2534#1 ------------------------------------------------------------
consensus_2534#0 GCGCCATCAGAAAAGGAAAGAAACGTGAGAGAGAGAGACACAGATCGCGGCGGCGATGGC 240
consensus_2534#1 ------------------------------------------------------------
consensus_2534#0 CGGAGATGGGGAGGATGGCGGCGAGAGGGTGCGGCTGTTCGTCGGCCAGGTGCCACGCAG 300
consensus_2534#1 ------------------------------------------------------------
consensus_2534#0 CATGGCGGAGGAGGACATCCTCGCCGTGGTCCGCGCCGCCGCACGCGCCGACGACGCCAC 360
consensus_2534#1 ------CCATTGATTTGCTCTTGCCCGTGTGTGAGAAGCAGAAGAAGAAGATGATGAAA- 53
* ** *** ** * * ** * * * ** ** * *
consensus_2534#0 CGTCATCCGCGACCGCGCCACCGGCGCCTCCCGCGGTTGCTGCTTCGTGGTGTGCTCGTC 420
consensus_2534#1 ----ATTTGGAATT----TATTTGGGTTCTTGCAGGTTGCTGCTTCGTGGTGTGCTCGTC 105
** * * * * * **************************
consensus_2534#0 GAGGGAGGAGGCAGACAAGGCCATCGCCGCGTACCACAACAAGTGCACCCTCCCAGGAGC 480
consensus_2534#1 GAGGGAGGAGGCAGACAAGGCCATCGCCGCGTACCACAACAAGTGCACCCTCCCAGGAGC 165
************************************************************
consensus_2534#0 GTCCAGGGCAATGCAGGTAAAATACGCGGACGGCGAGCTGGAACGATTAGCCGCAGAGCA 540
consensus_2534#1 GTCCAGGGCAATGCAGGTAAAATACGCGGACGGCGAGCTGGAACGATTAGCCGCAGAGCA 225
************************************************************
consensus_2534#0 GAAGCTTTTCATTGGCATGCTTCCAAGGGATGTGAAGGAGAATGAAGTTTCTGCATTGTT 600
consensus_2534#1 GAAGCTTTTCATTGGCATGCTTCCAAGGGATGTGAAGGAGAATGAAGTTTCTGCATTGTT 285
************************************************************
consensus_2534#0 TTCGCAGTACGGAAATATTAGACAACTGAAGGTACTGAGAAGTCCACAGAAAACAAGAAA 660
consensus_2534#1 TTCGCAGTACGGAAATATTAGACAACTGAAGGTACTGAGAAGTCCACAGAAAACAAGAAA 345
************************************************************
consensus_2534#0 AGCTGCAGCCTGTGCTATCCTGGAATTTGGAAGCAAAGAACATGCTAGAGCGGCCATTGA 720
consensus_2534#1 AGCTGCAGCCTGTGCTATCCTGGAATTTGGAAGCAAAGAACATGCTAGAGCGGCCATTGA 405
************************************************************
consensus_2534#0 AGCTTTGAATGGCACACGTGTTGTGTTCAATGGTTCAAGTGCGACTTTGGTTGTTAAGTT 780
consensus_2534#1 AGCTTTGAATGGCACACGTGTTGTGTTCAATGGTTCAAGTGCGACTTTGGTTGTTAAGTT 465
************************************************************
consensus_2534#0 GGCTGACACTGAAAGGGAAAAGCAAGCTAGAAAGGCACAGAAAGCTCAGGCTCAACCTTC 840
consensus_2534#1 GGCTGACACTGAAAGGGAAAAGCAAGCTAGAAAGGCACAGAAAGCTCAGGCTCAACCTTC 525
************************************************************
consensus_2534#0 TAAGCCCTTAAGATTTTATCTCTTCCCCCAGCTGCTATCAATATCTGGAGCACCACAGAT 900
consensus_2534#1 TAAGCCCTTAAGATTTTATCTCTTCCCCCAGCTGCTATCAATATCTGGAGCACCACAGAT 585
************************************************************
consensus_2534#0 GAGCTTTCTTCCTCCATATAATGTATTGGATTACAAGGTACCAGGGCATTATGGACACA- 959
consensus_2534#1 GAGCTTTCTTCCTCCATATAATGTATTGGATTACAAGAC-TGAAGGAACAACGGATCCAG 644
************************************* * ** * * *** **
consensus_2534#0 ---CGAAGAACCCATTGGCATTGTACAGCACTATGTACCC-ACATGTCAATCAAGGAAAT 1015
consensus_2534#1 AATTGAAAGATCTAATGAAGATG-ACAA-ACGACAAACTTGAGATGCTAGTGACTGAGCT 702
*** * * * ** ** *** ** * ** * *** * * * ** *
consensus_2534#0 TTACTCCAGGG---ACTCAACACA-AATATATTTCCAGGAACAGATCCTAAAATTTCGAA 1071
consensus_2534#1 CAAGAGCGTGGTGAACTTATTAGAGAATCGAGTTACATATAATGATCCAATACAGCCAAT 762
* * ** *** * * * *** * ** ** * ***** * * * *
consensus_2534#0 CCTG-ATT---------------------------------------------------- 1078
consensus_2534#1 TCAGCATTCTCTCTTACCTGTAGAGCATGACGAGAAGCAATATAAGCCTAATGAGTGTGA 822
* * ***
consensus_2534#0 ------------------------------------------------------------
consensus_2534#1 TTCCAAAACGTTAGAGGTACCAGGGCATTATGGACACACGAAGAACCCATTGGCATTGTA 882
consensus_2534#0 ------------------------------------------------------------
consensus_2534#1 CAGCACTATGTACCCACATGTCAATCAAGGAAATTTACTCCAGGGACTCAACACAAATAT 942
consensus_2534#0 -------------------------------------
consensus_2534#1 ATTTCCAGGAACAGATCCTAAAATTTCGAACCTGATT 979
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||