cluster # 2544

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Oryza sativa
cluster # 2544 cluster # 2544 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2544#0 length = 618 sequences # 1

consensus_2544#1 length = 87 sequences # 1

consensusID : consensus_2544#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 618
fasta sequence

                              [CCCCTCCCGTGACGCGCCTCGCCGCCGGACGACGCGCATCGCCGCCGCCTCCCCTGTAGTCACTCTGGCCCGCGCTGTATCCCCGCTGCTCCAACCTCTAAGCGGGAGGAGGCAGGCGCCGGGCACCCAGGACCGGCGGCTTCCCCCGTCGTTGTCGATCCGGCGATCCCCCATCCTTCCATCCTTGTCAACTTACAAGGGCTAGAGTGACATTAGGGTTTCACAGGAACTGACAACATGCATTTCAGAATTAAGGGAGCTCTATGCTTACTCGACGGACCGGCGAGGTGAACTTTGAGGAGACACATAATTGGACGAAAGGGAGCAGGCTGATCGATTGACGGAGGACCTGATAGAGGATATACTACTTCTTCAGATAATAAGGTTCTCTAAGCAGATCTATGCTTGAGTTGGATGCAACACAGCAAAGTTTGCCCATCTACTCGGTGGTGGAAGCACTCCCCCGGGCAACGGAGTGAGAGGCACCTCTGGACTACAACGGGGCTCTGTCACGCTGGTCCAGGCAGGGCCAACCCCTGAGTGGTGACGTACGGTTCGACCCGAGTGCGACACGCATCCACCCCTAGGAGCGCTCCCCGGACGGAGGCTGGGGCAGAG]

[+] EMBL CA758421             [CCCCTCCCGTGACGCGCCTCGCCGCCGGACGACGCGCATCGCCGCCGCCTCCCCTGTAGTCACTCTGGCCCGCGCTGTATCCCCGCTGCTCCAACCTCTAAGCGGGAGGAGGCAGGCGCCGGGCACCCAGGACCGGCGGCTTCCCCCGTCGTTGTCGATCCGGCGATCCCCCATCCTTCCATCCTTGTCAACTTACAAGGGCTAGAGTGACATTAGGGTTTCACAGGAACTGACAACATGCATTTCAGAATTAAGGGAGCTCTATGCTTACTCGACGGACCGGCGAGGTGAACTTTGAGGAGACACATAATTGGACGAAAGGGAGCAGGCTGATCGATTGACGGAGGACCTGATAGAGGATATACTACTTCTTCAGATAATAAGGTTCTCTAAGCAGATCTATGCTTGAGTTGGATGCAACACAGCAAAGTTTGCCCATCTACTCGGTGGTGGAAGCACTCCCCCGGGCAACGGAGTGAGAGGCACCTCTGGACTACAACGGGGCTCTGTCACGCTGGTCCAGGCAGGGCCAACCCCTGAGTGGTGACGTACGGTTCGACCCGAGTGCGACACGCATCCACCCCTAGGAGCGCTCCCCGGACGGAGGCTGGGGCAGAG]




>consensus_2544#0
CCCCTCCCGTGACGCGCCTCGCCGCCGGACGACGCGCATCGCCGCCGCCTCCCCTGTAGT
CACTCTGGCCCGCGCTGTATCCCCGCTGCTCCAACCTCTAAGCGGGAGGAGGCAGGCGCC
GGGCACCCAGGACCGGCGGCTTCCCCCGTCGTTGTCGATCCGGCGATCCCCCATCCTTCC
ATCCTTGTCAACTTACAAGGGCTAGAGTGACATTAGGGTTTCACAGGAACTGACAACATG
CATTTCAGAATTAAGGGAGCTCTATGCTTACTCGACGGACCGGCGAGGTGAACTTTGAGG
AGACACATAATTGGACGAAAGGGAGCAGGCTGATCGATTGACGGAGGACCTGATAGAGGA
TATACTACTTCTTCAGATAATAAGGTTCTCTAAGCAGATCTATGCTTGAGTTGGATGCAA
CACAGCAAAGTTTGCCCATCTACTCGGTGGTGGAAGCACTCCCCCGGGCAACGGAGTGAG
AGGCACCTCTGGACTACAACGGGGCTCTGTCACGCTGGTCCAGGCAGGGCCAACCCCTGA
GTGGTGACGTACGGTTCGACCCGAGTGCGACACGCATCCACCCCTAGGAGCGCTCCCCGG
ACGGAGGCTGGGGCAGAG

consensusID : consensus_2544#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 87
fasta sequence

                              [CCCCGCGCTGTCTCCCCGCTGCTCCAGCCTCTAAGCGGGAGGAGGCAGGCGCCGNCCACCNCGGTCCGGCGGTTTCCCCCNTCGCTG]

[+] EMBL AU068558             [CCCCGCGCTGTCTCCCCGCTGCTCCAGCCTCTAAGCGGGAGGAGGCAGGCGCCGNCCACCNCGGTCCGGCGGTTTCCCCCNTCGCTG]




>consensus_2544#1
CCCCGCGCTGTCTCCCCGCTGCTCCAGCCTCTAAGCGGGAGGAGGCAGGCGCCGNCCACC
NCGGTCCGGCGGTTTCCCCCNTCGCTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2544#0      CCCCTCCCGTGACGCGCCTCGCCGCCGGACGACGCGCATCGCCGCCGCCTCCCCTGTAGT 60
consensus_2544#1      ------------------------------------------------------------
                                                                                  

consensus_2544#0      CACTCTGGCCCGCGCTGTATCCCCGCTGCTCCAACCTCTAAGCGGGAGGAGGCAGGCGCC 120
consensus_2544#1      -------CCCCGCGCTGTCTCCCCGCTGCTCCAGCCTCTAAGCGGGAGGAGGCAGGCGCC 53
                              ********** ************** **************************

consensus_2544#0      GGGCACCCAGGACCGGCGGCTTCCCCCGTCGTTGTCGATCCGGCGATCCCCCATCCTTCC 180
consensus_2544#1      GNCCACCNCGGTCCGGCGGTTTCCCCCNTCGCTG-------------------------- 87
                      *  ****  ** ******* ******* *** **                          

consensus_2544#0      ATCCTTGTCAACTTACAAGGGCTAGAGTGACATTAGGGTTTCACAGGAACTGACAACATG 240
consensus_2544#1      ------------------------------------------------------------
                                                                                  

consensus_2544#0      CATTTCAGAATTAAGGGAGCTCTATGCTTACTCGACGGACCGGCGAGGTGAACTTTGAGG 300
consensus_2544#1      ------------------------------------------------------------
                                                                                  

consensus_2544#0      AGACACATAATTGGACGAAAGGGAGCAGGCTGATCGATTGACGGAGGACCTGATAGAGGA 360
consensus_2544#1      ------------------------------------------------------------
                                                                                  

consensus_2544#0      TATACTACTTCTTCAGATAATAAGGTTCTCTAAGCAGATCTATGCTTGAGTTGGATGCAA 420
consensus_2544#1      ------------------------------------------------------------
                                                                                  

consensus_2544#0      CACAGCAAAGTTTGCCCATCTACTCGGTGGTGGAAGCACTCCCCCGGGCAACGGAGTGAG 480
consensus_2544#1      ------------------------------------------------------------
                                                                                  

consensus_2544#0      AGGCACCTCTGGACTACAACGGGGCTCTGTCACGCTGGTCCAGGCAGGGCCAACCCCTGA 540
consensus_2544#1      ------------------------------------------------------------
                                                                                  

consensus_2544#0      GTGGTGACGTACGGTTCGACCCGAGTGCGACACGCATCCACCCCTAGGAGCGCTCCCCGG 600
consensus_2544#1      ------------------------------------------------------------
                                                                                  

consensus_2544#0      ACGGAGGCTGGGGCAGAG 618
consensus_2544#1      ------------------