These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2544#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 618 fasta sequence [CCCCTCCCGTGACGCGCCTCGCCGCCGGACGACGCGCATCGCCGCCGCCTCCCCTGTAGTCACTCTGGCCCGCGCTGTATCCCCGCTGCTCCAACCTCTAAGCGGGAGGAGGCAGGCGCCGGGCACCCAGGACCGGCGGCTTCCCCCGTCGTTGTCGATCCGGCGATCCCCCATCCTTCCATCCTTGTCAACTTACAAGGGCTAGAGTGACATTAGGGTTTCACAGGAACTGACAACATGCATTTCAGAATTAAGGGAGCTCTATGCTTACTCGACGGACCGGCGAGGTGAACTTTGAGGAGACACATAATTGGACGAAAGGGAGCAGGCTGATCGATTGACGGAGGACCTGATAGAGGATATACTACTTCTTCAGATAATAAGGTTCTCTAAGCAGATCTATGCTTGAGTTGGATGCAACACAGCAAAGTTTGCCCATCTACTCGGTGGTGGAAGCACTCCCCCGGGCAACGGAGTGAGAGGCACCTCTGGACTACAACGGGGCTCTGTCACGCTGGTCCAGGCAGGGCCAACCCCTGAGTGGTGACGTACGGTTCGACCCGAGTGCGACACGCATCCACCCCTAGGAGCGCTCCCCGGACGGAGGCTGGGGCAGAG] [+] EMBL CA758421 [CCCCTCCCGTGACGCGCCTCGCCGCCGGACGACGCGCATCGCCGCCGCCTCCCCTGTAGTCACTCTGGCCCGCGCTGTATCCCCGCTGCTCCAACCTCTAAGCGGGAGGAGGCAGGCGCCGGGCACCCAGGACCGGCGGCTTCCCCCGTCGTTGTCGATCCGGCGATCCCCCATCCTTCCATCCTTGTCAACTTACAAGGGCTAGAGTGACATTAGGGTTTCACAGGAACTGACAACATGCATTTCAGAATTAAGGGAGCTCTATGCTTACTCGACGGACCGGCGAGGTGAACTTTGAGGAGACACATAATTGGACGAAAGGGAGCAGGCTGATCGATTGACGGAGGACCTGATAGAGGATATACTACTTCTTCAGATAATAAGGTTCTCTAAGCAGATCTATGCTTGAGTTGGATGCAACACAGCAAAGTTTGCCCATCTACTCGGTGGTGGAAGCACTCCCCCGGGCAACGGAGTGAGAGGCACCTCTGGACTACAACGGGGCTCTGTCACGCTGGTCCAGGCAGGGCCAACCCCTGAGTGGTGACGTACGGTTCGACCCGAGTGCGACACGCATCCACCCCTAGGAGCGCTCCCCGGACGGAGGCTGGGGCAGAG] consensusID : consensus_2544#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 87 fasta sequence [CCCCGCGCTGTCTCCCCGCTGCTCCAGCCTCTAAGCGGGAGGAGGCAGGCGCCGNCCACCNCGGTCCGGCGGTTTCCCCCNTCGCTG] [+] EMBL AU068558 [CCCCGCGCTGTCTCCCCGCTGCTCCAGCCTCTAAGCGGGAGGAGGCAGGCGCCGNCCACCNCGGTCCGGCGGTTTCCCCCNTCGCTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2544#0 CCCCTCCCGTGACGCGCCTCGCCGCCGGACGACGCGCATCGCCGCCGCCTCCCCTGTAGT 60 consensus_2544#1 ------------------------------------------------------------ consensus_2544#0 CACTCTGGCCCGCGCTGTATCCCCGCTGCTCCAACCTCTAAGCGGGAGGAGGCAGGCGCC 120 consensus_2544#1 -------CCCCGCGCTGTCTCCCCGCTGCTCCAGCCTCTAAGCGGGAGGAGGCAGGCGCC 53 ********** ************** ************************** consensus_2544#0 GGGCACCCAGGACCGGCGGCTTCCCCCGTCGTTGTCGATCCGGCGATCCCCCATCCTTCC 180 consensus_2544#1 GNCCACCNCGGTCCGGCGGTTTCCCCCNTCGCTG-------------------------- 87 * **** ** ******* ******* *** ** consensus_2544#0 ATCCTTGTCAACTTACAAGGGCTAGAGTGACATTAGGGTTTCACAGGAACTGACAACATG 240 consensus_2544#1 ------------------------------------------------------------ consensus_2544#0 CATTTCAGAATTAAGGGAGCTCTATGCTTACTCGACGGACCGGCGAGGTGAACTTTGAGG 300 consensus_2544#1 ------------------------------------------------------------ consensus_2544#0 AGACACATAATTGGACGAAAGGGAGCAGGCTGATCGATTGACGGAGGACCTGATAGAGGA 360 consensus_2544#1 ------------------------------------------------------------ consensus_2544#0 TATACTACTTCTTCAGATAATAAGGTTCTCTAAGCAGATCTATGCTTGAGTTGGATGCAA 420 consensus_2544#1 ------------------------------------------------------------ consensus_2544#0 CACAGCAAAGTTTGCCCATCTACTCGGTGGTGGAAGCACTCCCCCGGGCAACGGAGTGAG 480 consensus_2544#1 ------------------------------------------------------------ consensus_2544#0 AGGCACCTCTGGACTACAACGGGGCTCTGTCACGCTGGTCCAGGCAGGGCCAACCCCTGA 540 consensus_2544#1 ------------------------------------------------------------ consensus_2544#0 GTGGTGACGTACGGTTCGACCCGAGTGCGACACGCATCCACCCCTAGGAGCGCTCCCCGG 600 consensus_2544#1 ------------------------------------------------------------ consensus_2544#0 ACGGAGGCTGGGGCAGAG 618 consensus_2544#1 ------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||