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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2545#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1454 fasta sequence
[CACATGTCATCCTCATTCCCTCCTCCTTTCTCTCTCCCCTCTTCTCGACGCCGACGCTTCCCATCCACGCATTCCTCGCCGCGGTGGCCGCCGACGCCGACCCACCTCGCGTCGTCCTCGTCTTCGGCGGCGGGTCCAGCCGCGGCGTACAGGTCGCCAACGCCGGCGGGGTCTACTCCACCGATGTCGCCGACTACGCTGTCGGCCTCCTGTTCGACGTTCTCGGCCACGTCTCCGTCGGAGACCGCTACGTCCGGCGTGGCCTCTGGCCGGAGCGCGGTGATTTCGTCCCCCTCGGATCCAAGATCGGCGGGAAGCGAGTCGGCATCATCGGGCTGGGCAACATCGGCTCGGCGATTGCGAGGAGACTGGAGGCGTTCGGCTGCGTCGTCTCCTACCACAACCGCCGGTGAAGGGAGGACGTGGTCTACACCTACTTCCCGACCGCCACCGACCTCGCCGCGAGCTCCGACGTGCTCGTCGTGGCGTGCACGCTGACGGCGGAGACACGGCACATCGTGGACCGGGGCGTGCTAGACGCGCTGGGGGAGCTTGGCGTGGTCGCCCGCTTCTGCTATGGGGAGCAGTTGGATCTCCATCAGGTTGCAGGCTTGCAGCTGCAGATGCAGATGCAGATGCAGATAAAAAGATCGAGGTGCGCTCGGGCCTGGTTGAGTATTTCCCAGCCCGGGCCGCAAACGACCGCTGGGCAACTGGGTGGTCGCAGTGCTGGTTCTACCTCGATGTCGGGGTGGACTCCGGGCTGGCTTCCACCAACAAGATCTACTTCCGCCACCTCCCGGAGGTCAATGCGGACGACGAAGACCTCGACCCGCTGCACCAGTCTCTCCGCAGGATGGCGAAGTGGCTCAGCATGCCGGACCTGACGGAGGAATTCGTCATGCTTCGGATCATTCCGCTCTGGAATGGCTGGGTCCACGACCTTACTTCGGGAGACGAAGACAAGGCCGGGGCCTATGTGGGCCCGGTGACCTCCTCAACTTTGCTGACGCCGGTCTCTACGGCCATTACGGAGGCCGAGAAGATCCTTGGGAAGCCGGTCGTAAAGGAGAAGCAAGAGCGGACCGAACGGACCAGCTCTTGGGAGAGGACCAACCGGGTGGCAGCCCGGTTCAACTTGCAACTTCCGGCCCTCCCGTCCTTGAGCGAGGCCGAGGTGGAGGCCGAGGTGGCAGAGGCCGCCAAGTCCACTGGCAAGCGGAAAGGTTCACGAGGCGGTGGCGGAGGCTGGCGCACTAAGCGGACCAGGGGAAATGATTCCCCAATCCCGGCAATTCCTCTCCGGGCTGTGGCTCCCAACTATCTGCACTCGTAGGCTTCTAGCAGCCCGACGGCGGCTGCAGACGTGGTTTCTTCCTCCGCCGACCCCATCGTGATTCCCGCAGACTCCGAGGGCTCGGGGGAGTCTGCCTGGACAACCGCGTTTCCCGGTA]
[+] EMBL AK105557 [CACATGTCATCCTCATTCCCTCCTCCTTTCTCTCTCCCCTCTTCTCGACGCCGACGCTTCCCATCCACGCATTCCTCGCCGCGGTGGCCGCCGACGCCGACCCACCTCGCGTCGTCCTCGTCTTCGGCGGCGGGTCCAGCCGCGGCGTACAGGTCGCCAACGCCGGCGGGGTCTACTCCACCGATGTCGCCGACTACGCTGTCGGCCTCCTGTTCGACGTTCTCGGCCACGTCTCCGTCGGAGACCGCTACGTCCGGCGTGGCCTCTGGCCGGAGCGCGGTGATTTCGTCCCCCTCGGATCCAAGATCGGCGGGAAGCGAGTCGGCATCATCGGGCTGGGCAACATCGGCTCGGCGATTGCGAGGAGACTGGAGGCGTTCGGCTGCGTCGTCTCCTACCACAACCGCCGGTGAAGGGAGGACGTGGTCTACACCTACTTCCCGACCGCCACCGACCTCGCCGCGAGCTCCGACGTGCTCGTCGTGGCGTGCACGCTGACGGCGGAGACACGGCACATCGTGGACCGGGGCGTGCTAGACGCGCTGGGGGAGCTTGGCGTGGTCGCCCGCTTCTGCTATGGGGAGCAGTTGGATCTCCATCAGGTTGCAGGCTTGCAGCTGCAGATGCAGATGCAGATGCAGATAAAAAGATCGAGGTGCGCTCGGGCCTGGTTGAGTATTTCCCAGCCCGGGCCGCAAACGACCGCTGGGCAACTGGGTGGTCGCAGTGCTGGTTCTACCTCGATGTCGGGGTGGACTCCGGGCTGGCTTCCACCAACAAGATCTACTTCCGCCACCTCCCGGAGGTCAATGCGGACGACGAAGACCTCGACCCGCTGCACCAGTCTCTCCGCAGGATGGCGAAGTGGCTCAGCATGCCGGACCTGACGGAGGAATTCGTCATGCTTCGGATCATTCCGCTCTGGAATGGCTGGGTCCACGACCTTACTTCGGGAGACGAAGACAAGGCCGGGGCCTATGTGGGCCCGGTGACCTCCTCAACTTTGCTGACGCCGGTCTCTACGGCCATTACGGAGGCCGAGAAGATCCTTGGGAAGCCGGTCGTAAAGGAGAAGCAAGAGCGGACCGAACGGACCAGCTCTTGGGAGAGGACCAACCGGGTGGCAGCCCGGTTCAACTTGCAACTTCCGGCCCTCCCGTCCTTGAGCGAGGCCGAGGTGGAGGCCGAGGTGGCAGAGGCCGCCAAGTCCACTGGCAAGCGGAAAGGTTCACGAGGCGGTGGCGGAGGCTGGCGCACTAAGCGGACCAGGGGAAATGATTCCCCAATCCCGGCAATTCCTCTCCGGGCTGTGGCTCCCAACTATCTGCACTCGTAGGCTTCTAGCAGCCCGACGGCGGCTGCAGACGTGGTTTCTTCCTCCGCCGACCCCATCGTGATTCCCGCAGACTCCGAGGGCTCGGGGGAGTCTGCCTGGACAACCGCGTTTCCCGGTA]
consensusID : consensus_2545#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1081 fasta sequence
[AAGCAACAAATCACCAAAAAAAAAGAAAGAGAAATGTCGTCGCCGCCGGTGCTCTTGCTGTGCCGGCTGTTCCCGGGCACCTTCACCGACGTCGCCCACCGATTCCGCCTCCTCGACTTCTACGCCTCCGCGCTTCCCATCCACGCCTTCCTCGCCGCCGTGGCCGCCCACGCCGACCCACCTCGCGTCGTCCTCGTCTTCGGCGGCGGGCCCATCCCCGTCGGCGCCGAGCTGCTCGACGCCGTCCCCTCCCTCCGCTGCATCATCACCGTCAGCGCCGGGACCAACCACATCGACCTCCGCGAGTGCGCGCGCCGCGGCGTGCAGGTCGCCAACGCCGGCGGGATCTACTCCACCGACGTCGCCGACTACGCTGTCGGCCTCCTGCTCGACGTTCTCCGCCACGTCTCCGCCGGAGACCGCTTCGTCCGGCGCGGCCTCTGTCCGGAGCAGCGCGGCGGCGATTTCCTCCCCCTCGGATCCAAGATCGGCGGGAGGCGCGTCGGCATCATCGGCCTCGGCAGCATAGGGTCGGCGATCGCGAGGAGACTGGAGGCGTTCGGCTGCGTCGTCTCCTACCACAACCGCCGGCGAAGGGAGGACGTGGCCTACGCCTACTTCCCGACCGCCACCGACCTCGCCGCGAGCTCCGACGTGCTCGTCGTGGCGTGCGCGCTGACGGCGGAGACGCGGCGCATCGTGGACCGGGGCGTGCTGGACGCGCTGGGGGAGCGCGGCGTGGTCGTGAACGTGGCGCGCGGCGCCAACGTCGACGAGGCGGAGCTGGTGCGCGCGCTGGCGGAGGGCAGGGTCGCCGGCGCGGGGTTGGAAGTGTTCGACGACGAGCCCAACGTGCCGCCGGAGCTGTGGGCCATGGACAACGTGGTGCTCACCCCGCACCAGGCCATCTTCACCCCGGAATCCATGGCCGACCTGAGCCGCGTCGTCCTCGCCAACCTCGACGCGTTCTTCGCCGGCGAGCCGCTGCTTACGCGAGTGGAAGCCTCGGAGTGACGCACACTTGCCCTGTTAGTCCAACAATTGACTTATTCTTATTATCATCATTATTGCTATAAAATGT]
[+] EMBL AK070553 [AAGCAACAAATCACCAAAAAAAAAGAAAGAGAAATGTCGTCGCCGCCGGTGCTCTTGCTGTGCCGGCTGTTCCCGGGCACCTTCACCGACGTCGCCCACCGATTCCGCCTCCTCGACTTCTACGCCTCCGCGCTTCCCATCCACGCCTTCCTCGCCGCCGTGGCCGCCCACGCCGACCCACCTCGCGTCGTCCTCGTCTTCGGCGGCGGGCCCATCCCCGTCGGCGCCGAGCTGCTCGACGCCGTCCCCTCCCTCCGCTGCATCATCACCGTCAGCGCCGGGACCAACCACATCGACCTCCGCGAGTGCGCGCGCCGCGGCGTGCAGGTCGCCAACGCCGGCGGGATCTACTCCACCGACGTCGCCGACTACGCTGTCGGCCTCCTGCTCGACGTTCTCCGCCACGTCTCCGCCGGAGACCGCTTCGTCCGGCGCGGCCTCTGTCCGGAGCAGCGCGGCGGCGATTTCCTCCCCCTCGGATCCAAGATCGGCGGGAGGCGCGTCGGCATCATCGGCCTCGGCAGCATAGGGTCGGCGATCGCGAGGAGACTGGAGGCGTTCGGCTGCGTCGTCTCCTACCACAACCGCCGGCGAAGGGAGGACGTGGCCTACGCCTACTTCCCGACCGCCACCGACCTCGCCGCGAGCTCCGACGTGCTCGTCGTGGCGTGCGCGCTGACGGCGGAGACGCGGCGCATCGTGGACCGGGGCGTGCTGGACGCGCTGGGGGAGCGCGGCGTGGTCGTGAACGTGGCGCGCGGCGCCAACGTCGACGAGGCGGAGCTGGTGCGCGCGCTGGCGGAGGGCAGGGTCGCCGGCGCGGGGTTGGAAGTGTTCGACGACGAGCCCAACGTGCCGCCGGAGCTGTGGGCCATGGACAACGTGGTGCTCACCCCGCACCAGGCCATCTTCACCCCGGAATCCATGGCCGACCTGAGCCGCGTCGTCCTCGCCAACCTCGACGCGTTCTTCGCCGGCGAGCCGCTGCTTACGCGAGTGGAAGCCTCGGAGTGACGCACACTTGCCCTGTTAGTCCAACAATTGACTTATTCTTATTATCATCATTATTGCTATAAAATGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2545#0 ------------------------------------------------------------
consensus_2545#1 AAGCAACAAATCACCAAAAAAAAAGAAAGAGAAATGTCGTCGCCGCCGGTGCTCTTGCTG 60
consensus_2545#0 -----------------CACATGTCATCCTCATTCCCTCCTCCTTTCTCTCTCCCCTCTT 43
consensus_2545#1 TGCCGGCTGTTCCCGGGCACCT-TCACCGACGTCGCCCACCGATTCCGCCTCCTCGACTT 119
*** * *** * * * ** * ** * * * * ***
consensus_2545#0 CTCGACGCCGACGCTTCCCATCCACGCATTCCTCGCCGCGGTGGCCGCCGACGCCGACCC 103
consensus_2545#1 CTACGCCTCCGCGCTTCCCATCCACGCCTTCCTCGCCGCCGTGGCCGCCCACGCCGACCC 179
** * * **************** *********** ********* **********
consensus_2545#0 ACCTCGCGTCGTCCTCGTCTTCGGCGGCGGGTCCA------------------------- 138
consensus_2545#1 ACCTCGCGTCGTCCTCGTCTTCGGCGGCGGGCCCATCCCCGTCGGCGCCGAGCTGCTCGA 239
******************************* ***
consensus_2545#0 ------------------------------------------------------------
consensus_2545#1 CGCCGTCCCCTCCCTCCGCTGCATCATCACCGTCAGCGCCGGGACCAACCACATCGACCT 299
consensus_2545#0 --------------GCCGCGGCGTACAGGTCGCCAACGCCGGCGGGGTCTACTCCACCGA 184
consensus_2545#1 CCGCGAGTGCGCGCGCCGCGGCGTGCAGGTCGCCAACGCCGGCGGGATCTACTCCACCGA 359
********** ********************* *************
consensus_2545#0 TGTCGCCGACTACGCTGTCGGCCTCCTGTTCGACGTTCTCGGCCACGTCTCCGTCGGAGA 244
consensus_2545#1 CGTCGCCGACTACGCTGTCGGCCTCCTGCTCGACGTTCTCCGCCACGTCTCCGCCGGAGA 419
*************************** *********** ************ ******
consensus_2545#0 CCGCTACGTCCGGCGTGGCCTCTGGCCGGAGC------GCGGTGATTTCGTCCCCCTCGG 298
consensus_2545#1 CCGCTTCGTCCGGCGCGGCCTCTGTCCGGAGCAGCGCGGCGGCGATTTCCTCCCCCTCGG 479
***** ********* ******** ******* **** ****** **********
consensus_2545#0 ATCCAAGATCGGCGGGAAGCGAGTCGGCATCATCGGGCTGGGCAACATCGGCTCGGCGAT 358
consensus_2545#1 ATCCAAGATCGGCGGGAGGCGCGTCGGCATCATCGGCCTCGGCAGCATAGGGTCGGCGAT 539
***************** *** ************** ** **** *** ** ********
consensus_2545#0 TGCGAGGAGACTGGAGGCGTTCGGCTGCGTCGTCTCCTACCACAACCGCCGGTGAAGGGA 418
consensus_2545#1 CGCGAGGAGACTGGAGGCGTTCGGCTGCGTCGTCTCCTACCACAACCGCCGGCGAAGGGA 599
*************************************************** *******
consensus_2545#0 GGACGTGGTCTACACCTACTTCCCGACCGCCACCGACCTCGCCGCGAGCTCCGACGTGCT 478
consensus_2545#1 GGACGTGGCCTACGCCTACTTCCCGACCGCCACCGACCTCGCCGCGAGCTCCGACGTGCT 659
******** **** **********************************************
consensus_2545#0 CGTCGTGGCGTGCACGCTGACGGCGGAGACACGGCACATCGTGGACCGGGGCGTGCTAGA 538
consensus_2545#1 CGTCGTGGCGTGCGCGCTGACGGCGGAGACGCGGCGCATCGTGGACCGGGGCGTGCTGGA 719
************* **************** **** ********************* **
consensus_2545#0 CGCGCTGGGGGAGCTTGGCGTGGTCGCCCGCTTCTGCTATGGGGAGCAGTTGGATCTCCA 598
consensus_2545#1 CGCGCTGGGGGAGCGCGGCGTGGTCGTGAAC-------GTGGCGCGCGGCGCCAACGTCG 772
************** ********** * *** * ** * * * *
consensus_2545#0 TCAGGTTGCAGGCTTGCAGCTGCAGATGCAGATGCAGATGCAGATAAAAAGATCGAGGTG 658
consensus_2545#1 ACGAG----------------GCGGA-GCTGGTGCGCGCGCTGGCGGAGGG--CAGGGT- 812
* * ** ** ** * *** ** * * * * ***
consensus_2545#0 CGCTCGGGCCTGGTTGAGTATTTCCCAGCCCGGGCCGCAAACGACCGCTGGGCAACTGGG 718
consensus_2545#1 CGCCGGCGCGGGGTTGGAAGTGTTCGACGACGAGCC-CAACGTGCCGCCGGAGCTGTGGG 871
*** * ** ***** * * * * ** *** *** **** ** ****
consensus_2545#0 TGGTCGCAGTGCTGGTTCTACCTCGATGTCGGGGTGGACTCCGGGCTGGCTTCCACCAAC 778
consensus_2545#1 CCATGGACAACGTGGTGCTCACCCCGCACCAGGCCAT-CTTCACCCCGGAATCCATGGCC 930
* * **** ** * * * ** ** * * ** **** *
consensus_2545#0 AAGATCTACTTCCGCCACCTCCCGGAGGTCAATGCGGACGACGAAGACCTCGACCCGCTG 838
consensus_2545#1 GACCTGAGCCGCGTCGTCCTCGCCAACCTCGACGCGTTCTTCGCCGG---CGAGCCGCTG 987
* * * * * **** * * ** * *** * ** * *** ******
consensus_2545#0 CACCAGTCTCTCCGCAGGATGGCGAAGTGGCTCA-GCATGCCGGACCTGACGGAGGAATT 897
consensus_2545#1 C-TTACGCGAGTGGAAGCCT--CGGAGTGACGCACACTTGCCCTGTTAGTCCAACAATTG 1044
* * * * ** * ** **** * ** * **** * * * * *
consensus_2545#0 CGTCATGCTTCGGATCATT----CCGCTCTGGAATGGCTGGGTCCACGACCTTACTTCGG 953
consensus_2545#1 ACTTATTCTTATTATCATCATTATTGCTATAAAATGT----------------------- 1081
* ** *** ***** *** * ****
consensus_2545#0 GAGACGAAGACAAGGCCGGGGCCTATGTGGGCCCGGTGACCTCCTCAACTTTGCTGACGC 1013
consensus_2545#1 ------------------------------------------------------------
consensus_2545#0 CGGTCTCTACGGCCATTACGGAGGCCGAGAAGATCCTTGGGAAGCCGGTCGTAAAGGAGA 1073
consensus_2545#1 ------------------------------------------------------------
consensus_2545#0 AGCAAGAGCGGACCGAACGGACCAGCTCTTGGGAGAGGACCAACCGGGTGGCAGCCCGGT 1133
consensus_2545#1 ------------------------------------------------------------
consensus_2545#0 TCAACTTGCAACTTCCGGCCCTCCCGTCCTTGAGCGAGGCCGAGGTGGAGGCCGAGGTGG 1193
consensus_2545#1 ------------------------------------------------------------
consensus_2545#0 CAGAGGCCGCCAAGTCCACTGGCAAGCGGAAAGGTTCACGAGGCGGTGGCGGAGGCTGGC 1253
consensus_2545#1 ------------------------------------------------------------
consensus_2545#0 GCACTAAGCGGACCAGGGGAAATGATTCCCCAATCCCGGCAATTCCTCTCCGGGCTGTGG 1313
consensus_2545#1 ------------------------------------------------------------
consensus_2545#0 CTCCCAACTATCTGCACTCGTAGGCTTCTAGCAGCCCGACGGCGGCTGCAGACGTGGTTT 1373
consensus_2545#1 ------------------------------------------------------------
consensus_2545#0 CTTCCTCCGCCGACCCCATCGTGATTCCCGCAGACTCCGAGGGCTCGGGGGAGTCTGCCT 1433
consensus_2545#1 ------------------------------------------------------------
consensus_2545#0 GGACAACCGCGTTTCCCGGTA 1454
consensus_2545#1 ---------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||