|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_255#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1968 fasta sequence
[TCATGATTCAGATTCAGATCATGATGATAACAAGAAGAAGAAGAAGAATTCTCGCTATGGTTCAGAAGATGATTCTGAGGCTAAATATGATGAAAAGAAGCACAGTAAACACTTGAAGAATTCTCGCCATGATACAGATGATGATTCTGAGAGTGACCATAAGAATGCAAAGTGTAAAAAGAGTTCTCGCCATGATTCAGAGTCTGATTCTGAGAGTGATCATAAGAATGCAAGGCGTGGAAAGAGCTCTCGCCATGATTCAGAGTCTGATTCAGATGGTGATTATGGCAAGAAGACAACAAAACATGGCAAGAACGATCGTGATGAGAGAAAGAAAAGGCCTGCCACGATCTCTCGCCGACATGACTCAGAAGATGAAAAGCCTAGAAAGGGTAAGCGCATGGATGATTCAGATACTGACTCGGAGGGTGATGGTTCGTTCAGTGAGTCGGACAGCGACTATGATCGGAAGAAGAAGAAATCTACAAATAGTTCTCGCAATGAATCTAAAGATGATAAGCCCCGAAGAAAGGCTCCTAAGGACAAGTATTCTGATGGCCCAGAAAGTGGCTCAGACAGTGATCATGGTGGAAAATCAAAGTATTCAAAGATTTCTCGCCGTGATTCTGAACTTCAGTCCCGAAAGGATGCTGATAAACAGGACCAGTACCGTGATAAATTGAAGAGTGAGTTTGCTAGCGATGGCTATGGAGAGAAGAAATCTGTTAAGATCCCATACAATGACTTGAAAGATGACAAGCCAAGCAGCAAGGTTGTTCGGAAGGACCGGTACAGTGATGAATCAGAGACTGATTCAGAAACTTATGTTAAGAAAAAGAAGAATCTTCCGAAGTCCTATCACCATAGTGATAAACCAGCACAAAGAGGTAAAGAAAAGGAAGAGAACTCTGGAAAGAATGTTGATAAGCGCAAGAGGCATGATACTGATTCTGATTCAGATAGCCATGCTCGTGAAAGGAAAAGACACCTTGATGCACGGGCGAGTTTGGCTGCCCAAAAGAAAAGAAGTGTGACTAGCTCAAGTGAGAGTTCAGAGAGTTCAGATTACAGCAGTAGCAGTGATAGTGAATCAGATGTGAGTTCTGACAGCCGCGAGGATAGGAAATCAGCAAGACAGTTGAAGCATGATGAGTTAGAGAGAAAGAAAAGGAGTCAAGACGAGAAGAGAAAGGAGCTAGAGAAGCAAAAGCAGGAGGAAGAGAGAAAAGAGCTGGACAGGCAGAAGCAGAGGGAGGAAGAGAGAAAGGCTAAAGAGCTTGAGAAGCAGAAGCAGAGGGAGGAAGAGAGAAAGGCATTGGAGAAGCAGAAGCAGGGGGAGAGGGACGGAGATAGATATGAGCGTGACCATGAGGGGAGGAAAGGCGAAAATGATGTTGAAAGAGACTACAAAAGAAAAGTTGGAGAAGATAGGTATGATCCAAGCAGGAGGCAGGATGAGGATAGGTATGATCCAAACAGGAGACATGATGAAGATATGTATGATCCAAATAGGAGGCATGAAGAACATGGTCGACGAAGAAATAGAGATTTTGATAGCCGTGATCCGAAAAGGTCTAGACATGATGATTCTTATCATCATTCTCGAAGGGACTATGAACAGCGTTATTCTAGAGATGAATATAGAGACAGGAGGCATCGTTGAATGCAAGTCATGTCCATCTCTGGTTTCTTCAAGCAGAAGAGGGATGCATCTTTACATGAACCGAGCAGATGATCGATGTCCTGCTCCCTCAAGTTTTTCAGAGTCCTACCAGAAGAAGACTTGATGCAGCAGTAAATCTCTCCTAGCAGTAGAGAACCTTTTGCCTCAGGAATGTACGTTTGCTTATGTTTGTATGAACTTTCATACTTGTTGTTTTGTTGTGTGAATGATCAATATGTATTCTGGTGGATATAATTACCTTGTGTCTGCAAGAAATATATGATTTAACACTGTGCCCATGTGGT]
[+] EMBL AK063294 [TCATGATTCAGATTCAGATCATGATGATAACAAGAAGAAGAAGAAGAATTCTCGCTATGGTTCAGAAGATGATTCTGAGGCTAAATATGATGAAAAGAAGCACAGTAAACACTTGAAGAATTCTCGCCATGATACAGATGATGATTCTGAGAGTGACCATAAGAATGCAAAGTGTAAAAAGAGTTCTCGCCATGATTCAGAGTCTGATTCTGAGAGTGATCATAAGAATGCAAGGCGTGGAAAGAGCTCTCGCCATGATTCAGAGTCTGATTCAGATGGTGATTATGGCAAGAAGACAACAAAACATGGCAAGAACGATCGTGATGAGAGAAAGAAAAGGCCTGCCACGATCTCTCGCCGACATGACTCAGAAGATGAAAAGCCTAGAAAGGGTAAGCGCATGGATGATTCAGATACTGACTCGGAGGGTGATGGTTCGTTCAGTGAGTCGGACAGCGACTATGATCGGAAGAAGAAGAAATCTACAAATAGTTCTCGCAATGAATCTAAAGATGATAAGCCCCGAAGAAAGGCTCCTAAGGACAAGTATTCTGATGGCCCAGAAAGTGGCTCAGACAGTGATCATGGTGGAAAATCAAAGTATTCAAAGATTTCTCGCCGTGATTCTGAACTTCAGTCCCGAAAGGATGCTGATAAACAGGACCAGTACCGTGATAAATTGAAGAGTGAGTTTGCTAGCGATGGCTATGGAGAGAAGAAATCTGTTAAGATCCCATACAATGACTTGAAAGATGACAAGCCAAGCAGCAAGGTTGTTCGGAAGGACCGGTACAGTGATGAATCAGAGACTGATTCAGAAACTTATGTTAAGAAAAAGAAGAATCTTCCGAAGTCCTATCACCATAGTGATAAACCAGCACAAAGAGGTAAAGAAAAGGAAGAGAACTCTGGAAAGAATGTTGATAAGCGCAAGAGGCATGATACTGATTCTGATTCAGATAGCCATGCTCGTGAAAGGAAAAGACACCTTGATGCACGGGCGAGTTTGGCTGCCCAAAAGAAAAGAAGTGTGACTAGCTCAAGTGAGAGTTCAGAGAGTTCAGATTACAGCAGTAGCAGTGATAGTGAATCAGATGTGAGTTCTGACAGCCGCGAGGATAGGAAATCAGCAAGACAGTTGAAGCATGATGAGTTAGAGAGAAAGAAAAGGAGTCAAGACGAGAAGAGAAAGGAGCTAGAGAAGCAAAAGCAGGAGGAAGAGAGAAAAGAGCTGGACAGGCAGAAGCAGAGGGAGGAAGAGAGAAAGGCTAAAGAGCTTGAGAAGCAGAAGCAGAGGGAGGAAGAGAGAAAGGCATTGGAGAAGCAGAAGCAGGGGGAGAGGGACGGAGATAGATATGAGCGTGACCATGAGGGGAGGAAAGGCGAAAATGATGTTGAAAGAGACTACAAAAGAAAAGTTGGAGAAGATAGGTATGATCCAAGCAGGAGGCAGGATGAGGATAGGTATGATCCAAACAGGAGACATGATGAAGATATGTATGATCCAAATAGGAGGCATGAAGAACATGGTCGACGAAGAAATAGAGATTTTGATAGCCGTGATCCGAAAAGGTCTAGACATGATGATTCTTATCATCATTCTCGAAGGGACTATGAACAGCGTTATTCTAGAGATGAATATAGAGACAGGAGGCATCGTTGAATGCAAGTCATGTCCATCTCTGGTTTCTTCAAGCAGAAGAGGGATGCATCTTTACATGAACCGAGCAGATGATCGATGTCCTGCTCCCTCAAGTTTTTCAGAGTCCTACCAGAAGAAGACTTGATGCAGCAGTAAATCTCTCCTAGCAGTAGAGAACCTTTTGCCTCAGGAATGTACGTTTGCTTATGTTTGTATGAACTTTCATACTTGTTGTTTTGTTGTGTGAATGATCAATATGTATTCTGGTGGATATAATTACCTTGTGTCTGCAAGAAATATATGATTTAACACTGTGCCCATGTGGT]
consensusID : consensus_255#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 676 fasta sequence
[GGGAAAAGAAAAGGCTTGGGAAACCAAAAACGGGGAAGAGGGGGGAAAAAAATTATTAGGTGCCCCTTGGGGGGAGAAAGGCAATATTTTTTTTAAAGGGGTCTCAAAAAAAATGTGGAGATTATGGTTTTGTTCCAACCGGGGCCATGTTTGGGTATGGTTTTTTTCCAACCGGGGCCCTTATGAATATGGGTTATGTCCCAATTGGGGGCCTTAAACACAGTGGTCCAAAAAAAAAAGAATTTTTAATACCTGTTTCCAAAAGGGTCTACACAGGATGTTTCTTATCCTCTTTCCAAAGGGGCCTATGAAAAGGTTTTTCTAGAGTTGAATATAGAGCCGGGGGGTTCGTTGAAATCCAAGTCATGTCAATTTGGGGTTTTTCAAGCAGAAAGGGGATGCTTCTTTCATGAACCGAGCAGATGATCAATGTCTTGTTCCCTCAAGTTTTTAGAGGTCCTAGCAGAAGAAGACTTGATGCAGCAGTAATCTTTTCCTAGCAGTAGAGAACCTTTTGCCTCAGGAATGTACGTTTGCGTATGTTTGTATGAACTTTCATACTTGTTGCTTTGTTGTGTGAATGATCAATATGTATTTTGGTGGATATAATTACCCTGTGTTTGCAAGAAATATATGATTTAACCCTGTGCCCAAAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CA760607 [GGGAAAAGAAAAGGCTTGGGAAACCAAAAACGGGGAAGAGGGGGGAAAAAAATTATTAGGTGCCCCTTGGGGGGAGAAAGGCAATATTTTTTTTAAAGGGGTCTCAAAAAAAATGTGGAGATTATGGTTTTGTTCCAACCGGGGCCATGTTTGGGTATGGTTTTTTTCCAACCGGGGCCCTTATGAATATGGGTTATGTCCCAATTGGGGGCCTTAAACACAGTGGTCCAAAAAAAAAAGAATTTTTAATACCTGTTTCCAAAAGGGTCTACACAGGATGTTTCTTATCCTCTTTCCAAAGGGGCCTATGAAAAGGTTTTTCTAGAGTTGAATATAGAGCCGGGGGGTTCGTTGAAATCCAAGTCATGTCAATTTGGGGTTTTTCAAGCAGAAAGGGGATGCTTCTTTCATGAACCGAGCAGATGATCAATGTCTTGTTCCCTCAAGTTTTTAGAGGTCCTAGCAGAAGAAGACTTGATGCAGCAGTAATCTTTTCCTAGCAGTAGAGAACCTTTTGCCTCAGGAATGTACGTTTGCGTATGTTTGTATGAACTTTCATACTTGTTGCTTTGTTGTGTGAATGATCAATATGTATTTTGGTGGATATAATTACCCTGTGTTTGCAAGAAATATATGATTTAACCCTGTGCCCAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_255#0 TCATGATTCAGATTCAGATCATGATGATAACAAGAAGAAGAAGAAGAATTCTCGCTATGG 60
consensus_255#1 ------------------------------------------------------------
consensus_255#0 TTCAGAAGATGATTCTGAGGCTAAATATGATGAAAAGAAGCACAGTAAACACTTGAAGAA 120
consensus_255#1 ------------------------------------------------------------
consensus_255#0 TTCTCGCCATGATACAGATGATGATTCTGAGAGTGACCATAAGAATGCAAAGTGTAAAAA 180
consensus_255#1 ------------------------------------------------------------
consensus_255#0 GAGTTCTCGCCATGATTCAGAGTCTGATTCTGAGAGTGATCATAAGAATGCAAGGCGTGG 240
consensus_255#1 ------------------------------------------------------------
consensus_255#0 AAAGAGCTCTCGCCATGATTCAGAGTCTGATTCAGATGGTGATTATGGCAAGAAGACAAC 300
consensus_255#1 ------------------------------------------------------------
consensus_255#0 AAAACATGGCAAGAACGATCGTGATGAGAGAAAGAAAAGGCCTGCCACGATCTCTCGCCG 360
consensus_255#1 ------------------------------------------------------------
consensus_255#0 ACATGACTCAGAAGATGAAAAGCCTAGAAAGGGTAAGCGCATGGATGATTCAGATACTGA 420
consensus_255#1 ------------------------------------------------------------
consensus_255#0 CTCGGAGGGTGATGGTTCGTTCAGTGAGTCGGACAGCGACTATGATCGGAAGAAGAAGAA 480
consensus_255#1 ------------------------------------------------------------
consensus_255#0 ATCTACAAATAGTTCTCGCAATGAATCTAAAGATGATAAGCCCCGAAGAAAGGCTCCTAA 540
consensus_255#1 ------------------------------------------------------------
consensus_255#0 GGACAAGTATTCTGATGGCCCAGAAAGTGGCTCAGACAGTGATCATGGTGGAAAATCAAA 600
consensus_255#1 ------------------------------------------------------------
consensus_255#0 GTATTCAAAGATTTCTCGCCGTGATTCTGAACTTCAGTCCCGAAAGGATGCTGATAAACA 660
consensus_255#1 ------------------------------------------------------------
consensus_255#0 GGACCAGTACCGTGATAAATTGAAGAGTGAGTTTGCTAGCGATGGCTATGGAGAGAAGAA 720
consensus_255#1 ------------------------------------------------------------
consensus_255#0 ATCTGTTAAGATCCCATACAATGACTTGAAAGATGACAAGCCAAGCAGCAAGGTTGTTCG 780
consensus_255#1 ------------------------------------------------------------
consensus_255#0 GAAGGACCGGTACAGTGATGAATCAGAGACTGATTCAGAAACTTATGTTAAGAAAAAGAA 840
consensus_255#1 ------------------------------------------------------------
consensus_255#0 GAATCTTCCGAAGTCCTATCACCATAGTGATAAACCAGCACAAAGAGGTAAAGAAAAGGA 900
consensus_255#1 ------------------------------------------------------------
consensus_255#0 AGAGAACTCTGGAAAGAATGTTGATAAGCGCAAGAGGCATGATACTGATTCTGATTCAGA 960
consensus_255#1 ------------------------------------------------------------
consensus_255#0 TAGCCATGCTCGTGAAAGGAAAAGACACCTTGATGCACGGGCGAGTTTGGCTGCCCAAAA 1020
consensus_255#1 ------------------------------------------------------------
consensus_255#0 GAAAAGAAGTGTGACTAGCTCAAGTGAGAGTTCAGAGAGTTCAGATTACAGCAGTAGCAG 1080
consensus_255#1 ------------------------------------------------------------
consensus_255#0 TGATAGTGAATCAGATGTGAGTTCTGACAGCCGCGAGGATAGGAAATCAGCAAGACAGTT 1140
consensus_255#1 ------------------------------------------------------------
consensus_255#0 GAAGCATGATGAGTTAGAGAGAAAGAAAAGGAGTCAAGACGAGAAGAGAAAGGAGCTAGA 1200
consensus_255#1 ------------------------------------------------------------
consensus_255#0 GAAGCAAAAGCAGGAGGAAGAGAGAAAAGAGCTGGACAGGCAGAAGCAGAGGGAGGAAGA 1260
consensus_255#1 ------------------------------------------------------------
consensus_255#0 GAGAAAGGCTAAAGAGCTTGAGAAGCAGAAGCAGAGGGAGGAAGAGAGAAAGGCATTGGA 1320
consensus_255#1 ---------------------------------------GGGAAAAGAAAAGGC-TTGGG 20
** * * ****** ****
consensus_255#0 GAAGCAGAAGCAGGGGGAGAGGGACGGAGATAGATATGAGCGTGACCATGAGGGGAGGAA 1380
consensus_255#1 AAACCAAAAAC-GGGGAAGAGGGGGGAAAAAAATTATTAG-GTGCCCCTTGGGGGGAGAA 78
** ** ** * **** ****** * * * * *** ** *** ** * **** ***
consensus_255#0 AGGCGAAAATGATGTTGAAAGAGACTACAAAAGAAAAGTTGGAGAAGATAGGTATGATCC 1440
consensus_255#1 AGGC-AATATTTTTTTTAAAGGGGTCTCAAAAAAAATGT-GGAGATTATGGTTTTGTTCC 136
**** ** ** * ** **** * ***** *** ** ***** ** * * ** ***
consensus_255#0 AAGCAGGAGGCAGGATGAGGATAGGTATGATCCAAACAGGAGACATGATGAAGATATGTA 1500
consensus_255#1 AA-CCGGGGCCATGTTTGGGTATGGTTTTTTTCCAACCGGGGCCCTTATGAATATGGGTT 195
** * ** * ** * * ** *** * * * *** ** * * * ***** ** **
consensus_255#0 TGATCCAAATAGGAGGCATGAAGAACA-TGGTCGACGAAGAAATAGAGATTTTGATAGCC 1559
consensus_255#1 ATGTCCCAATTGGGGGCCTTAAACACAGTGGTCCA-AAAAAAAAAGAATTTTTAATACCT 254
*** *** ** *** * ** *** ***** * ** *** *** **** *** *
consensus_255#0 GTGATCCGAAAAGGTCTAGACATGATGATTCTTATCATCATTCTCGAAGGGACTATGAAC 1619
consensus_255#1 GTT-TCCAAAAGGGTCTACACAGGATGTTTCTTATCCTCTTTCCAAAGGGGCCTATGAAA 313
** *** *** ****** *** **** ******** ** *** * *** *******
consensus_255#0 AGCGTTATTCTAGAGATGAATATAGAGACAGGAGGCATCGTTGAA-TGCAAGTCATGTCC 1678
consensus_255#1 AG-GTTTTTCTAGAGTTGAATATAGAGCCGGGGGGT-TCGTTGAAATCCAAGTCATGTCA 371
** *** ******** *********** * ** ** ******** * ***********
consensus_255#0 ATCTCTGGTTTCTTCAAGCAGAAGAGGGATGCATCTTTACATGAACCGAGCAGATGATCG 1738
consensus_255#1 ATTTGGGGTTT-TTCAAGCAGAAAGGGGATGCTTCTTT-CATGAACCGAGCAGATGATCA 429
** * ***** *********** ******* ***** ********************
consensus_255#0 ATGTCCTGCTCCCTCAAGTTTTTCAGAGTCCTACCAGAAGAAGACTTGATGCAGCAGTAA 1798
consensus_255#1 ATGTCTTGTTCCCTCAAGTTTTTAGAGGTCCTAGCAGAAGAAGACTTGATGCAGCAGTAA 489
***** ** ************** ****** **************************
consensus_255#0 ATCTCTCCTAGCAGTAGAGAACCTTTTGCCTCAGGAATGTACGTTTGCTTATGTTTGTAT 1858
consensus_255#1 TCTTTTCCTAGCAGTAGAGAACCTTTTGCCTCAGGAATGTACGTTTGCGTATGTTTGTAT 549
* ******************************************* ***********
consensus_255#0 GAACTTTCATACTTGTTGTTTTGTTGTGTGAATGATCAATATGTATTCTGGTGGATATAA 1918
consensus_255#1 GAACTTTCATACTTGTTGCTTTGTTGTGTGAATGATCAATATGTATTTTGGTGGATATAA 609
****************** **************************** ************
consensus_255#0 TTACCTTGTGTCTGCAAGAAATATATGATTTAACACTGTGCCCATGTGGT---------- 1968
consensus_255#1 TTACCCTGTGTTTGCAAGAAATATATGATTTAACCCTGTGCCCAAAAAAAAAAAAAAAAA 669
***** ***** ********************** *********
consensus_255#0 -------
consensus_255#1 AAAAAAA 676
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||