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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2557#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 994 fasta sequence
[GTAGATCGATCGAGCCAGTCGCCCAGTGCTGCTCCTGCAGCGATGGCGGAGGCAGCCGGGACGAGGGCTTCACAGCAGCAGGAGGAAGCAGCTGGGATTGAGAACGGAGGAGGCAAGGACCAGCTGCCAGAAGATACAAGTAAGTTAAACATAACAGTCCTCTGGCTTGCAATCTACTTTAGGTTGATGGACGGCTTCGGGAAGCTGGCACTTGCCTGGGCCACCGTTGTGCTGCTAGGTGGATTCTCCACCCTGATAAAGCCCAAGGACTTTTGGTTCGTCACCATCATCGTGGTCATGCAAATAACAAGGTGCGTATCAATACGACATCCCTATATATATAAAGTAGAAGTTAACTAAACTGCTAATTAGTTTCCGTTTCCACCATCAATTGATACATAGGAAAAGTGCTGGCTTGTTCTTGGGCACTCGATCACAAGAGAAAAATTGGGCGTCCCATGGCTACAGGCAGTGCCCCTCTTTCACTGTGAATAGCCTGCACACGCCAGCCCCTCTCTCTCCTATGCATGCATGCATGTGTGTGTATCGCTCTAACGAGTTTCAAATATTTTCCCTTAAATTAGTTATTATCTCACATATGATCCAATTACACCCATATTTATTAAATTACTAGAAAAAATATCCATGCGTTGCAACGGGAAAATACCTTAAATCACTTAGATCCGTACTTTCCTTTCTCAAAACTTCGGCAAACTCAATTTGAAAATTTGAAAGCGAATTCAACTTTCCCTTTTGAATTACTTTCTTCTTTTACTAGTCTCCCCTTGTTTAAAATTCGTTTAAATTCTCGTATATCAAAATTCACTAAAGATACAAAAGTCCATATAATCACACGTTGTGACCGATGATGGATGAAAAACGGAAGCCCATTAAGATTTTTCTACAAAGTAGGTGGTGAAGATATTCCAGGAGAAAAACAAGATAAAAAGAGGAGAAAAGAGAGGAGATTGAAAGGAGAGGGAGATAATCAAGA]
[+] EMBL AK058902 [GTAGATCGATCGAGCCAGTCGCCCAGTGCTGCTCCTGCAGCGATGGCGGAGGCAGCCGGGACGAGGGCTTCACAGCAGCAGGAGGAAGCAGCTGGGATTGAGAACGGAGGAGGCAAGGACCAGCTGCCAGAAGATACAAGTAAGTTAAACATAACAGTCCTCTGGCTTGCAATCTACTTTAGGTTGATGGACGGCTTCGGGAAGCTGGCACTTGCCTGGGCCACCGTTGTGCTGCTAGGTGGATTCTCCACCCTGATAAAGCCCAAGGACTTTTGGTTCGTCACCATCATCGTGGTCATGCAAATAACAAGGTGCGTATCAATACGACATCCCTATATATATAAAGTAGAAGTTAACTAAACTGCTAATTAGTTTCCGTTTCCACCATCAATTGATACATAGGAAAAGTGCTGGCTTGTTCTTGGGCACTCGATCACAAGAGAAAAATTGGGCGTCCCATGGCTACAGGCAGTGCCCCTCTTTCACTGTGAATAGCCTGCACACGCCAGCCCCTCTCTCTCCTATGCATGCATGCATGTGTGTGTATCGCTCTAACGAGTTTCAAATATTTTCCCTTAAATTAGTTATTATCTCACATATGATCCAATTACACCCATATTTATTAAATTACTAGAAAAAATATCCATGCGTTGCAACGGGAAAATACCTTAAATCACTTAGATCCGTACTTTCCTTTCTCAAAACTTCGGCAAACTCAATTTGAAAATTTGAAAGCGAATTCAACTTTCCCTTTTGAATTACTTTCTTCTTTTACTAGTCTCCCCTTGTTTAAAATTCGTTTAAATTCTCGTATATCAAAATTCACTAAAGATACAAAAGTCCATATAATCACACGTTGTGACCGATGATGGATGAAAAACGGAAGCCCATTAAGATTTTTCTACAAAGTAGGTGGTGAAGATATTCCAGGAGAAAAACAAGATAAAAAGAGGAGAAAAGAGAGGAGATTGAAAGGAGAGGGAGATAATCAAGA]
consensusID : consensus_2557#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 702 fasta sequence
[CCAGCGCTGCTCCTGCAGCGATGGCGGAGGCAGCCGGGACGAGGGCTTCACAGCAGCAGGAGGAAGCAGCTGGGATTGAGAACGGAGGAGGCAAGGACCAGCTGCCAGAAGATACAAGTAAGTTAAACATAACAGTCCTCTGGCTTGCAATCTACTTTAGGTTGATGGACGGCTTCGGGAAGCTGGCACTTGCCTGGGCCACCGTTGTGCTGCTAGGTGGATTCTCCACCCTGATAAAGCCCAAGGACTTTTGGTTCGTCACCATCATCGTGGTCATGCAAATAACAAGGGTTTTTGGCGGTTCCCAGAAACCCGAGGATCAACTCTTTATTCGGGTACCACTCTCGATGCTGCACCGTGACGAACTTACGCATGTTGGACTCGGAAGTTGGCGGAAGAACACAATAAAGAACGGAGAGGCCAGCAAAGGCTCGTCAAGCGTACGACAGAATCAACGCAATGTCCTAGTTCGCATGTTTTGCCCAAAGCGCCATGTCAAGATGACCATATTCCAGACAACCCTGACATGGATGGAGGCAGCTGCACTCGTCGCTTGCATCTTCATATCGTTCCGGCGTTTACTCAAGCAAGACTACGTCGATCCAAAAGACAAAGTTAAGGATGACCACAAGAACATTAGAGGTTCCCTGAATGTCTTCTATGGGCTGGCCCTTGCCCATAGCATGTCCTACTACATCTTGA]
[+] EMBL CB672744 [CCAGCGCTGCTCCTGCAGCGATGGCGGAGGCAGCCGGGACGAGGGCTTCACAGCAGCAGGAGGAAGCAGCTGGGATTGAGAACGGAGGAGGCAAGGACCAGCTGCCAGAAGATACAAGTAAGTTAAACATAACAGTCCTCTGGCTTGCAATCTACTTTAGGTTGATGGACGGCTTCGGGAAGCTGGCACTTGCCTGGGCCACCGTTGTGCTGCTAGGTGGATTCTCCACCCTGATAAAGCCCAAGGACTTTTGGTTCGTCACCATCATCGTGGTCATGCAAATAACAAGGGTTTTTGGCGGTTCCCAGAAACCCGAGGATCAACTCTTTATTCGGGTACCACTCTCGATGCTGCACCGTGACGAACTTACGCATGTTGGACTCGGAAGTTGGCGGAAGAACACAATAAAGAACGGAGAGGCCAGCAAAGGCTCGTCAAGCGTACGACAGAATCAACGCAATGTCCTAGTTCGCATGTTTTGCCCAAAGCGCCATGTCAAGATGACCATATTCCAGACAACCCTGACATGGATGGAGGCAGCTGCACTCGTCGCTTGCATCTTCATATCGTTCCGGCGTTTACTCAAGCAAGACTACGTCGATCCAAAAGACAAAGTTAAGGATGACCACAAGAACATTAGAGGTTCCCTGAATGTCTTCTATGGGCTGGCCCTTGCCCATAGCATGTCCTACTACATCTTGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2557#0 GTAGATCGATCGAGCCAGTCGCCCAGTGCTGCTCCTGCAGCGATGGCGGAGGCAGCCGGG 60
consensus_2557#1 ----------------------CCAGCGCTGCTCCTGCAGCGATGGCGGAGGCAGCCGGG 38
**** *********************************
consensus_2557#0 ACGAGGGCTTCACAGCAGCAGGAGGAAGCAGCTGGGATTGAGAACGGAGGAGGCAAGGAC 120
consensus_2557#1 ACGAGGGCTTCACAGCAGCAGGAGGAAGCAGCTGGGATTGAGAACGGAGGAGGCAAGGAC 98
************************************************************
consensus_2557#0 CAGCTGCCAGAAGATACAAGTAAGTTAAACATAACAGTCCTCTGGCTTGCAATCTACTTT 180
consensus_2557#1 CAGCTGCCAGAAGATACAAGTAAGTTAAACATAACAGTCCTCTGGCTTGCAATCTACTTT 158
************************************************************
consensus_2557#0 AGGTTGATGGACGGCTTCGGGAAGCTGGCACTTGCCTGGGCCACCGTTGTGCTGCTAGGT 240
consensus_2557#1 AGGTTGATGGACGGCTTCGGGAAGCTGGCACTTGCCTGGGCCACCGTTGTGCTGCTAGGT 218
************************************************************
consensus_2557#0 GGATTCTCCACCCTGATAAAGCCCAAGGACTTTTGGTTCGTCACCATCATCGTGGTCATG 300
consensus_2557#1 GGATTCTCCACCCTGATAAAGCCCAAGGACTTTTGGTTCGTCACCATCATCGTGGTCATG 278
************************************************************
consensus_2557#0 CAAATAACAAGGTGCGTATCAATACGACATCCCTATATATATAAAGTAGAAGTTAACTAA 360
consensus_2557#1 CAAATAACAAGG---GTTTTTG-GCGGTTCCCAGAAACCCGAGGATCAACTCTTTATTCG 334
************ ** * ** ** * * * * ** * *
consensus_2557#0 ACTGCTAATTAGTTTCCGTTTCCACCATCAATTGATACATAGGAAAAGTGCTGGCTTGTT 420
consensus_2557#1 GGTACCACTCTCGATGCTGCACCGTGACGAACTTACGCATGTTGGA--------CTCGGA 386
* * * * * * ** * ** * * *** * ** *
consensus_2557#0 CTTGGGCACTCGATCACAAGAGAAAAATTGGGCGTCCCATGGCTACAGGCAGTGCCCCTC 480
consensus_2557#1 AGTTGGCGGAAGAACACAATA-AAGAACGGAGAGGCCAGCAAAGGCTCGTCAAGC--GTA 443
* *** ** ***** * ** ** * * * ** * * ** *
consensus_2557#0 TTTCACTGTGAATAGCCTGCACACGCCAGCCCCTCTCTCTCCTATGCATGCATGCATGTG 540
consensus_2557#1 CGACAGAATCAACGCAATGTCCTAGTTCGCATGTTT-TGCCCAAAGCGC-CATGTCAAGA 501
** * ** ** * * ** * * * ** * ** ****
consensus_2557#0 TGTGTATCGCTCTAACGAGTTTCAAATATTTTCCCTTAAATTAGTTATTATCTCACATAT 600
consensus_2557#1 TGACCATATTCCAGACAACCCTGACATGGATGGAGGCAGCT--GCACTCGTCGCTTGCAT 559
** ** * ** * * * ** * * * * * ** * **
consensus_2557#0 GATCCAATTACACCCATATTTATTAAATTACTAGAAAAAATATCCATGCGTTGCAACGGG 660
consensus_2557#1 CTTCATATCGTTCCGGCGTTTACTCAAGCAAGACTACGTCGATCCAAAAGACAAAGTTAA 619
** ** ** **** * ** * * * ***** * *
consensus_2557#0 AAAATACCTTAAATCACTTAGATCCGTACTTTCCTTTCTCAAAACTTCGGCAAACTCAAT 720
consensus_2557#1 GGATGACCACAAGAACATTAGAGGTTCCCTGAATGTCTTCTATGGGCTGGCCCTTGCCCA 679
* *** ** ***** ** * ** * *** *
consensus_2557#0 TTGAAAATTTGAAAGCGAATTCAACTTTCCCTTTTGAATTACTTTCTTCTTTTACTAGTC 780
consensus_2557#1 TAGCATGTCCTACTACATCTTGA------------------------------------- 702
* * * * * * ** *
consensus_2557#0 TCCCCTTGTTTAAAATTCGTTTAAATTCTCGTATATCAAAATTCACTAAAGATACAAAAG 840
consensus_2557#1 ------------------------------------------------------------
consensus_2557#0 TCCATATAATCACACGTTGTGACCGATGATGGATGAAAAACGGAAGCCCATTAAGATTTT 900
consensus_2557#1 ------------------------------------------------------------
consensus_2557#0 TCTACAAAGTAGGTGGTGAAGATATTCCAGGAGAAAAACAAGATAAAAAGAGGAGAAAAG 960
consensus_2557#1 ------------------------------------------------------------
consensus_2557#0 AGAGGAGATTGAAAGGAGAGGGAGATAATCAAGA 994
consensus_2557#1 ----------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||