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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2571#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 841 fasta sequence
[TGATGGTATGACAGAGAGGAATGTGGAACCTGATGTGGTTATTTACACTATCTTGATCGATGGGTATCGCCGTCTTGGAAAAATGGAGGATGCAATGGCGGTGAAGGAGGCAATGGCAAAGAAGGGGATCAGTCCCAATGTCACAACATATAATTGCTTGATAACAGGGTTTAGCCGCAGTGGGGATTGGAGGAGTGCTTCTGGCCTTCTGGATGAGATGAAGGAGAAAGGTATTGAAGCAGACGTCGTCACTTACAATGTGCTTATTGGTGCTTTGTGCTGCAAAGGTGAGGTACGGAAAGCTGTAAAGCTCTTGGATGAAATGTCGGAAGTTGGATTGGAACCAAACCATCTGACCTACAATACCATAATACAGGGGTTCTGTGATAAGGGTAACATTAAGTCTGCCTATGAAATTAGAACCAGGATGGAAAAATGTCGGAAACGGGCAAATGTGGTTACGTACAATGTGTTCATCAAGTATTTCTGCCAGATAGGGAAGATGGATGAAGCTAATGATCTACTCAATGAGATGTTGGACAAATGTCTAGTTCCAAACGGGATCACTTATGAAACGATAAAAGAGGGGATGATGGAAAAAGGCTATACACCAGATATTAGAGGGTGCACTGTCTCACAAGCTTCTGAAAACCCAGCATCATCCTGAGAAGTATGGAATCTATGACCTTCATCAAGCAAGCATTCGCAATTGGGAGGTAAATGAAACAATGCTGGCAACTGGAGTACCCTGATTGNGCTCATAATGGAAATGGTCAGCTAGTATTCCCATGGCTTTTNAAGATGGGCCTGGCCCTTTGATTNTGGCCANTGAGCATCTAGT]
[+] EMBL CA764336 [TGATGGTATGACAGAGAGGAATGTGGAACCTGATGTGGTTATTTACACTATCTTGATCGATGGGTATCGCCGTCTTGGAAAAATGGAGGATGCAATGGCGGTGAAGGAGGCAATGGCAAAGAAGGGGATCAGTCCCAATGTCACAACATATAATTGCTTGATAACAGGGTTTAGCCGCAGTGGGGATTGGAGGAGTGCTTCTGGCCTTCTGGATGAGATGAAGGAGAAAGGTATTGAAGCAGACGTCGTCACTTACAATGTGCTTATTGGTGCTTTGTGCTGCAAAGGTGAGGTACGGAAAGCTGTAAAGCTCTTGGATGAAATGTCGGAAGTTGGATTGGAACCAAACCATCTGACCTACAATACCATAATACAGGGGTTCTGTGATAAGGGTAACATTAAGTCTGCCTATGAAATTAGAACCAGGATGGAAAAATGTCGGAAACGGGCAAATGTGGTTACGTACAATGTGTTCATCAAGTATTTCTGCCAGATAGGGAAGATGGATGAAGCTAATGATCTACTCAATGAGATGTTGGACAAATGTCTAGTTCCAAACGGGATCACTTATGAAACGATAAAAGAGGGGATGATGGAAAAAGGCTATACACCAGATATTAGAGGGTGCACTGTCTCACAAGCTTCTGAAAACCCAGCATCATCCTGAGAAGTATGGAATCTATGACCTTCATCAAGCAAGCATTCGCAATTGGGAGGTAAATGAAACAATGCTGGCAACTGGAGTACCCTGATTGNGCTCATAATGGAAATGGTCAGCTAGTATTCCCATGGCTTTTNAAGATGGGCCTGGCCCTTTGATTNTGGCCANTGAGCATCTAGT]
consensusID : consensus_2571#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 689 fasta sequence
[GCCGGGTCCGATAAGCTTGGCTANGTGAAGCCAGCCAAGGCAAGCGGGTACACCCCAGGATGTAAAAATGTCGGAACCGGCCAAATGTCGTACGCGACAATGTGTTCATCAAGTATTTCTGCCAGATAGGCAAGATGGATGAACGCTAATGATCTACTCAATGAGATGTTGGACAAATGTCTAGTTCCAAACGGGATCACTTATGAAACGATAAAAGAGGGGATGATGGAAAAAGGCTATACACCAGATATTAGAGGGTGCACTGTCTCACAAGCTTCTGAAAACCCAGCATCATCCTGAGAAGAATCTATGACCTTCATCAAGCAAGCATTCGCAATTGGAAGTAAATGAAACAATGCTGGCAAACTGGAGTACCTGATTGTGCTCATAATGGAGATGGTCAGCTAGTATTCACCATGGCTTTTGAAGATGGGCCTGGCCCCTTGATTCTGGCCAATTGAGCATCTAGTCTAGGTAAGACTAACGTACCAAAGTAACTGCAGATAGTTTACGGTCTCTTGTGTAAATTTCTTATCCCATCTATTGTTAATGCCCATACAAATGACAGAAGAGATTGCAATCTCAGCAATAGCAATGTCCTCACCTGTTACGAATGGACTAGAGTTAACATCTCTGTACGAATGATTCGAAAAAAAACAGCTTATATGAAATATTGAAATGCAAAAAAA]
[-] EMBL CA763009 [GCCGGGTCCGATAAGCTTGGCTANGTGAAGCCAGCCAAGGCAAGCGGGTACACCCCAGGATGTAAAAATGTCGGAACCGGCCAAATGTCGTACGCGACAATGTGTTCATCAAGTATTTCTGCCAGATAGGCAAGATGGATGAACGCTAATGATCTACTCAATGAGATGTTGGACAAATGTCTAGTTCCAAACGGGATCACTTATGAAACGATAAAAGAGGGGATGATGGAAAAAGGCTATACACCAGATATTAGAGGGTGCACTGTCTCACAAGCTTCTGAAAACCCAGCATCATCCTGAGAAGAATCTATGACCTTCATCAAGCAAGCATTCGCAATTGGAAGTAAATGAAACAATGCTGGCAAACTGGAGTACCTGATTGTGCTCATAATGGAGATGGTCAGCTAGTATTCACCATGGCTTTTGAAGATGGGCCTGGCCCCTTGATTCTGGCCAATTGAGCATCTAGTCTAGGTAAGACTAACGTACCAAAGTAACTGCAGATAGTTTACGGTCTCTTGTGTAAATTTCTTATCCCATCTATTGTTAATGCCCATACAAATGACAGAAGAGATTGCAATCTCAGCAATAGCAATGTCCTCACCTGTTACGAATGGACTAGAGTTAACATCTCTGTACGAATGATTCGAAAAAAAACAGCTTATATGAAATATTGAAATGCAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2571#0 TGATGGTATGACAGAGAGGAATGTGGAACCTGATGTGGTTATTTACACTATCTTGATCGA 60
consensus_2571#1 ------------------------------------------------------------
consensus_2571#0 TGGGTATCGCCGTCTTGGAAAAATGGAGGATGCAATGGCGGTGAAGGAGGCAATGGCAAA 120
consensus_2571#1 ------------------------------------------------------------
consensus_2571#0 GAAGGGGATCAGTCCCAATGTCACAACATATAATTGCTTGATAACAGGGTTTAGCCGCAG 180
consensus_2571#1 ------------------------------------------------------------
consensus_2571#0 TGGGGATTGGAGGAGTGCTTCTGGCCTTCTGGATGAGATGAAGGAGAAAGGTATTGAAGC 240
consensus_2571#1 ------------------------------------------------------------
consensus_2571#0 AGACGTCGTCACTTACAATGTGCTTATTGGTGCTTTGTGCTGCAAAGGTGAGGTACGGAA 300
consensus_2571#1 ------------------------------------------------------------
consensus_2571#0 AGCTGTAAAGCTCTTGGATGAAATGTCGGAAGTTGGATTGGAACCAAACCATCTGACCTA 360
consensus_2571#1 ------------------------------------------------------------
consensus_2571#0 CAATACCATAATACAGGGGTTCTGTGATAAGGGTAACATTAAGTCTGCCTATGAAATTAG 420
consensus_2571#1 -------------GCCGGGTCCGATAAGCTTGGCTANGTGAAGCCAGCCAAGGCAAGCGG 47
**** * * * ** * * *** * *** * * ** *
consensus_2571#0 AA-----CCAGGATGGAAAAATGTCGGAAACGGGCAAATGTGGTTACGTACAATGTGTTC 475
consensus_2571#1 GTACACCCCAGGATGTAAAAATGTCGGAACCGGCCAAATGTCGTACGCGACAATGTGTTC 107
******** ************* *** ******* ** ***********
consensus_2571#0 ATCAAGTATTTCTGCCAGATAGGGAAGATGGATGAA-GCTAATGATCTACTCAATGAGAT 534
consensus_2571#1 ATCAAGTATTTCTGCCAGATAGGCAAGATGGATGAACGCTAATGATCTACTCAATGAGAT 167
*********************** ************ ***********************
consensus_2571#0 GTTGGACAAATGTCTAGTTCCAAACGGGATCACTTATGAAACGATAAAAGAGGGGATGAT 594
consensus_2571#1 GTTGGACAAATGTCTAGTTCCAAACGGGATCACTTATGAAACGATAAAAGAGGGGATGAT 227
************************************************************
consensus_2571#0 GGAAAAAGGCTATACACCAGATATTAGAGGGTGCACTGTCTCACAAGCTTCTGAAAACCC 654
consensus_2571#1 GGAAAAAGGCTATACACCAGATATTAGAGGGTGCACTGTCTCACAAGCTTCTGAAAACCC 287
************************************************************
consensus_2571#0 AGCATCATCCTGAGAAGTATGGAATCTATGACCTTCATCAAGCAAGCATTCGCAATTGGG 714
consensus_2571#1 AGCATCATCCTGAGAA-----GAATCTATGACCTTCATCAAGCAAGCATTCGCAATTGG- 341
**************** **************************************
consensus_2571#0 AGGTAAATGAAACAATGCTGGCAA-CTGGAGTACCCTGATTGNGCTCATAATGGAAATGG 773
consensus_2571#1 AAGTAAATGAAACAATGCTGGCAAACTGGAGTACC-TGATTGTGCTCATAATGGAGATGG 400
* ********************** ********** ****** ************ ****
consensus_2571#0 TCAGCTAGTATTC-CCATGGCTTTTNAAGATGGGCCTGGCCCTTTGATTNTGGCCANT-G 831
consensus_2571#1 TCAGCTAGTATTCACCATGGCTTTTGAAGATGGGCCTGGCCCCTTGATTCTGGCCAATTG 460
************* *********** **************** ****** ****** * *
consensus_2571#0 AGCATCTAGT-------------------------------------------------- 841
consensus_2571#1 AGCATCTAGTCTAGGTAAGACTAACGTACCAAAGTAACTGCAGATAGTTTACGGTCTCTT 520
**********
consensus_2571#0 ------------------------------------------------------------
consensus_2571#1 GTGTAAATTTCTTATCCCATCTATTGTTAATGCCCATACAAATGACAGAAGAGATTGCAA 580
consensus_2571#0 ------------------------------------------------------------
consensus_2571#1 TCTCAGCAATAGCAATGTCCTCACCTGTTACGAATGGACTAGAGTTAACATCTCTGTACG 640
consensus_2571#0 -------------------------------------------------
consensus_2571#1 AATGATTCGAAAAAAAACAGCTTATATGAAATATTGAAATGCAAAAAAA 689
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||