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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2574#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1397 fasta sequence
[GAACACTATACTAGAGGGAAGAGTGAGAGGAGGAGAGTGGTGGTGGTGCGAGAGGGAGGGAGATGGGCATTCCCAGAGCTCTCCTGCTGCTGCTGCTCCACGTCGCCGTCGTCGTCGTTCTCCGGTCGCTGCCGGTGTCCTCCGCCGACCTGTACGCGCTCGTCTACAAGGGCTGCTCCAACCAGAGCTTCCCCGGCGGCGCGGTGCCCCCCACAGTCGCCGCGCTCTCCTCCTCGCTCTCGGACCAGTCCGCCTCCGCCAAGCTCTACAAGACCTCGTCGTCATCCTCGGCTTCCTCCACCTCCGTCTTCGGCCTCTTCCAGTGCCGCGGGGACCTCTCCGGCTCCGACTGCGCCGCCTGCGTCTCCCGCGCCATGTCATCCTGGTCCGAGGTTTGCGGCGCCTCCGTCGCCGCCCGTGTCCAGCTCACCGGCTGCCTCGCGCTCTACGAGATATCCGGGTTCCCCCAGGTGTCCGGGACCCAGATGCTGTTCAAGACCTGCGGCACCGGCGGCGGCGGCGGGACCGACTTCGAGATGCGCCGCGACACCGCCTTCGCGCAGATGGAGGCCAGCGTCGGCGGGGGAAACGGCGGGTTCTACGCCACCAGCTACCAGCAGGTGTACGCCATGGCGCAGTGCGAGGGCGACCTCTCCTCGGGGGACTGCGGCCAGTGCGTCACCCAGGCCGTCCAGCACGTCGAGGTCGAGTGCGGGGGCGCGCCATCAGGCCAGGTGTACCTCGAGAAGTGCTACATTAGCTACAGCTACTATCCCCATGGCATACCCCATGGCGGCGGCATCGGAGGGCAGCAGACAGCAAAGACTGTAGCCATTGTTCTCGGTGGAGCTGTAGGTCTGGGTTTTGTGGTCATATGCTTGCTTTTCGCCAGGAGCCTGGTCAAGAAGAAGGAGGATTATTGATGGGCACGCATGGAGCAACTGGACAAAAGGCATTGGGGCATGGTATGCATTTTGATTGGGGTCTCGATGTTTGTTTCTTCAAGGTGGTGAGTGGAATACAGAGGGGATTGTTTTTTTTTGGCTCTTCTTCCTCTGGCCATGTGGGGGTGCGCCATGCCATCCCGCGTGATGAGAGAGGGGAAAAGGAGGTAGTGCCAAGTAGTTCAGAAAGGGGACTCATTTTGGGGGAATGCTATTTTGGTTCACTGATTAAATTGGAGGTAGATTATCTATTTGGGCTGTACCACCTTCGCCTCTCTTGCTTAGGTTCTAGCAGTACATCGATTTTTCTTGTATTCTTTCCCCAAAAGAAATACATTTAGGTGTAGGCAGAAAGTATTTAGTCCTATGTTTAAGGTTTGCCGCGGCAGCTGCGGCAGGTCTAAGGTCTCTCTGACTGATTGGTTTTGCTTCGCTCTCATGAAATTGTTTCAT]
[+] EMBL AK106342 [GAACACTATACTAGAGGGAAGAGTGAGAGGAGGAGAGTGGTGGTGGTGCGAGAGGGAGGGAGATGGGCATTCCCAGAGCTCTCCTGCTGCTGCTGCTCCACGTCGCCGTCGTCGTCGTTCTCCGGTCGCTGCCGGTGTCCTCCGCCGACCTGTACGCGCTCGTCTACAAGGGCTGCTCCAACCAGAGCTTCCCCGGCGGCGCGGTGCCCCCCACAGTCGCCGCGCTCTCCTCCTCGCTCTCGGACCAGTCCGCCTCCGCCAAGCTCTACAAGACCTCGTCGTCATCCTCGGCTTCCTCCACCTCCGTCTTCGGCCTCTTCCAGTGCCGCGGGGACCTCTCCGGCTCCGACTGCGCCGCCTGCGTCTCCCGCGCCATGTCATCCTGGTCCGAGGTTTGCGGCGCCTCCGTCGCCGCCCGTGTCCAGCTCACCGGCTGCCTCGCGCTCTACGAGATATCCGGGTTCCCCCAGGTGTCCGGGACCCAGATGCTGTTCAAGACCTGCGGCACCGGCGGCGGCGGCGGGACCGACTTCGAGATGCGCCGCGACACCGCCTTCGCGCAGATGGAGGCCAGCGTCGGCGGGGGAAACGGCGGGTTCTACGCCACCAGCTACCAGCAGGTGTACGCCATGGCGCAGTGCGAGGGCGACCTCTCCTCGGGGGACTGCGGCCAGTGCGTCACCCAGGCCGTCCAGCACGTCGAGGTCGAGTGCGGGGGCGCGCCATCAGGCCAGGTGTACCTCGAGAAGTGCTACATTAGCTACAGCTACTATCCCCATGGCATACCCCATGGCGGCGGCATCGGAGGGCAGCAGACAGCAAAGACTGTAGCCATTGTTCTCGGTGGAGCTGTAGGTCTGGGTTTTGTGGTCATATGCTTGCTTTTCGCCAGGAGCCTGGTCAAGAAGAAGGAGGATTATTGATGGGCACGCATGGAGCAACTGGACAAAAGGCATTGGGGCATGGTATGCATTTTGATTGGGGTCTCGATGTTTGTTTCTTCAAGGTGGTGAGTGGAATACAGAGGGGATTGTTTTTTTTTGGCTCTTCTTCCTCTGGCCATGTGGGGGTGCGCCATGCCATCCCGCGTGATGAGAGAGGGGAAAAGGAGGTAGTGCCAAGTAGTTCAGAAAGGGGACTCATTTTGGGGGAATGCTATTTTGGTTCACTGATTAAATTGGAGGTAGATTATCTATTTGGGCTGTACCACCTTCGCCTCTCTTGCTTAGGTTCTAGCAGTACATCGATTTTTCTTGTATTCTTTCCCCAAAAGAAATACATTTAGGTGTAGGCAGAAAGTATTTAGTCCTATGTTTAAGGTTTGCCGCGGCAGCTGCGGCAGGTCTAAGGTCTCTCTGACTGATTGGTTTTGCTTCGCTCTCATGAAATTGTTTCAT]
consensusID : consensus_2574#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 991 fasta sequence
[GTGGTGCGAGAGGGAGGGAGATGGGCATTCCCAGAGCTCTCCTGCTGCTGCTGCTCCACGTCGCCGTCGTCGTCGTTCTCCGGTCGCTGCCGGTGTCCTCCGCCGACCTGTACGCGCTCGTCTACAAGGGCTGCTCCAACCAGAGCTTCCCCGGCGGCGCGGTGCCCCCCACAGTCGCCGCGCTCTCCTCCTCGCTCTCGGACCAGTCCGCCTCCGCCAAGTTCTACAAGACCTCGTCGTCATCCTCGGCTTCCTCCACCTCCGTCTTCGGCCTCTTCCAGTGCCGCGGGGACCTCTCCGGCTCCGACTGCGCCGCCTGCGTCTCCCGCGCCATGTCATCCTGGTCCGAGGTTTGCGGCGCCTCCGTCGCCGCCCGTGTCCAGCTCACCGGCTGCCTCGCGCTCTACGAGATATCCGGGTTCCCCCAGGTGTCCGGGACCCAGATGCTGTTCAAGACCTGCGGCACCGGCGGCGGCGGCGGGACCGACTTCGAGATGCGCCGCGACACCGCCTTCGCGCAGATGGAGGCCAGCGTCGGCGGGGGAAACGGCGGGTTCTACGCCACCAGCTACCAGCAGGTGTACGCCATGGCGCAGTGCGAGGGCGACCTCTCCTCGGGGGACTGCGGCCAGTGCGTCACCCAGGCCGTCCAGCACGTCGAGGTCGAGTGCGGGGGCGCGCCATCAGGCCAGGTGTACCTCGAGAAGTGCTACATTAGCTACAGCTACTATCCCCATGGCATACCCCATGGCGGCGGCATCGGAGCAGACAGCAAAGACTGTAGCCATTGTTCTCGGTGGAGCTGTAGGTCTGGGTTTTGTGGTCATATGCTTGCTTTTCGCCAGGAGCCTGGTCAAGAAGAAGGAGGGTGAGTTAGTGGAATCACATGCCACTCGCAGCACCATCTCTTCAATCGGCTATTCAATTTGCAGCTACCATTGCTTCCTGTTCTGGGTATCTGCCCTCTGTTCTTCTTACGAAAATCTGTGTG]
[+] EMBL AK071009 [GTGGTGCGAGAGGGAGGGAGATGGGCATTCCCAGAGCTCTCCTGCTGCTGCTGCTCCACGTCGCCGTCGTCGTCGTTCTCCGGTCGCTGCCGGTGTCCTCCGCCGACCTGTACGCGCTCGTCTACAAGGGCTGCTCCAACCAGAGCTTCCCCGGCGGCGCGGTGCCCCCCACAGTCGCCGCGCTCTCCTCCTCGCTCTCGGACCAGTCCGCCTCCGCCAAGTTCTACAAGACCTCGTCGTCATCCTCGGCTTCCTCCACCTCCGTCTTCGGCCTCTTCCAGTGCCGCGGGGACCTCTCCGGCTCCGACTGCGCCGCCTGCGTCTCCCGCGCCATGTCATCCTGGTCCGAGGTTTGCGGCGCCTCCGTCGCCGCCCGTGTCCAGCTCACCGGCTGCCTCGCGCTCTACGAGATATCCGGGTTCCCCCAGGTGTCCGGGACCCAGATGCTGTTCAAGACCTGCGGCACCGGCGGCGGCGGCGGGACCGACTTCGAGATGCGCCGCGACACCGCCTTCGCGCAGATGGAGGCCAGCGTCGGCGGGGGAAACGGCGGGTTCTACGCCACCAGCTACCAGCAGGTGTACGCCATGGCGCAGTGCGAGGGCGACCTCTCCTCGGGGGACTGCGGCCAGTGCGTCACCCAGGCCGTCCAGCACGTCGAGGTCGAGTGCGGGGGCGCGCCATCAGGCCAGGTGTACCTCGAGAAGTGCTACATTAGCTACAGCTACTATCCCCATGGCATACCCCATGGCGGCGGCATCGGAGCAGACAGCAAAGACTGTAGCCATTGTTCTCGGTGGAGCTGTAGGTCTGGGTTTTGTGGTCATATGCTTGCTTTTCGCCAGGAGCCTGGTCAAGAAGAAGGAGGGTGAGTTAGTGGAATCACATGCCACTCGCAGCACCATCTCTTCAATCGGCTATTCAATTTGCAGCTACCATTGCTTCCTGTTCTGGGTATCTGCCCTCTGTTCTTCTTACGAAAATCTGTGTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2574#0 GAACACTATACTAGAGGGAAGAGTGAGAGGAGGAGAGTGGTGGTGGTGCGAGAGGGAGGG 60
consensus_2574#1 ------------------------------------------GTGGTGCGAGAGGGAGGG 18
******************
consensus_2574#0 AGATGGGCATTCCCAGAGCTCTCCTGCTGCTGCTGCTCCACGTCGCCGTCGTCGTCGTTC 120
consensus_2574#1 AGATGGGCATTCCCAGAGCTCTCCTGCTGCTGCTGCTCCACGTCGCCGTCGTCGTCGTTC 78
************************************************************
consensus_2574#0 TCCGGTCGCTGCCGGTGTCCTCCGCCGACCTGTACGCGCTCGTCTACAAGGGCTGCTCCA 180
consensus_2574#1 TCCGGTCGCTGCCGGTGTCCTCCGCCGACCTGTACGCGCTCGTCTACAAGGGCTGCTCCA 138
************************************************************
consensus_2574#0 ACCAGAGCTTCCCCGGCGGCGCGGTGCCCCCCACAGTCGCCGCGCTCTCCTCCTCGCTCT 240
consensus_2574#1 ACCAGAGCTTCCCCGGCGGCGCGGTGCCCCCCACAGTCGCCGCGCTCTCCTCCTCGCTCT 198
************************************************************
consensus_2574#0 CGGACCAGTCCGCCTCCGCCAAGCTCTACAAGACCTCGTCGTCATCCTCGGCTTCCTCCA 300
consensus_2574#1 CGGACCAGTCCGCCTCCGCCAAGTTCTACAAGACCTCGTCGTCATCCTCGGCTTCCTCCA 258
*********************** ************************************
consensus_2574#0 CCTCCGTCTTCGGCCTCTTCCAGTGCCGCGGGGACCTCTCCGGCTCCGACTGCGCCGCCT 360
consensus_2574#1 CCTCCGTCTTCGGCCTCTTCCAGTGCCGCGGGGACCTCTCCGGCTCCGACTGCGCCGCCT 318
************************************************************
consensus_2574#0 GCGTCTCCCGCGCCATGTCATCCTGGTCCGAGGTTTGCGGCGCCTCCGTCGCCGCCCGTG 420
consensus_2574#1 GCGTCTCCCGCGCCATGTCATCCTGGTCCGAGGTTTGCGGCGCCTCCGTCGCCGCCCGTG 378
************************************************************
consensus_2574#0 TCCAGCTCACCGGCTGCCTCGCGCTCTACGAGATATCCGGGTTCCCCCAGGTGTCCGGGA 480
consensus_2574#1 TCCAGCTCACCGGCTGCCTCGCGCTCTACGAGATATCCGGGTTCCCCCAGGTGTCCGGGA 438
************************************************************
consensus_2574#0 CCCAGATGCTGTTCAAGACCTGCGGCACCGGCGGCGGCGGCGGGACCGACTTCGAGATGC 540
consensus_2574#1 CCCAGATGCTGTTCAAGACCTGCGGCACCGGCGGCGGCGGCGGGACCGACTTCGAGATGC 498
************************************************************
consensus_2574#0 GCCGCGACACCGCCTTCGCGCAGATGGAGGCCAGCGTCGGCGGGGGAAACGGCGGGTTCT 600
consensus_2574#1 GCCGCGACACCGCCTTCGCGCAGATGGAGGCCAGCGTCGGCGGGGGAAACGGCGGGTTCT 558
************************************************************
consensus_2574#0 ACGCCACCAGCTACCAGCAGGTGTACGCCATGGCGCAGTGCGAGGGCGACCTCTCCTCGG 660
consensus_2574#1 ACGCCACCAGCTACCAGCAGGTGTACGCCATGGCGCAGTGCGAGGGCGACCTCTCCTCGG 618
************************************************************
consensus_2574#0 GGGACTGCGGCCAGTGCGTCACCCAGGCCGTCCAGCACGTCGAGGTCGAGTGCGGGGGCG 720
consensus_2574#1 GGGACTGCGGCCAGTGCGTCACCCAGGCCGTCCAGCACGTCGAGGTCGAGTGCGGGGGCG 678
************************************************************
consensus_2574#0 CGCCATCAGGCCAGGTGTACCTCGAGAAGTGCTACATTAGCTACAGCTACTATCCCCATG 780
consensus_2574#1 CGCCATCAGGCCAGGTGTACCTCGAGAAGTGCTACATTAGCTACAGCTACTATCCCCATG 738
************************************************************
consensus_2574#0 GCATACCCCATGGCGGCGGCATCGGAGGGCAGCAGACAGCAAAGACTGTAGCCATTGTTC 840
consensus_2574#1 GCATACCCCATGGCGGCGGCATCGGA-----GCAGACAGCAAAGACTGTAGCCATTGTTC 793
************************** *****************************
consensus_2574#0 TCGGTGGAGCTGTAGGTCTGGGTTTTGTGGTCATATGCTTGCTTTTCGCCAGGAGCCTGG 900
consensus_2574#1 TCGGTGGAGCTGTAGGTCTGGGTTTTGTGGTCATATGCTTGCTTTTCGCCAGGAGCCTGG 853
************************************************************
consensus_2574#0 TCAAGAAGAAGGAGGATTA-TTGATGGGCACGCATGGAGCAACTGGACAAAAGGCATTGG 959
consensus_2574#1 TCAAGAAGAAGGAGGGTGAGTTAGTGGAATCACATG--CCACTCGCAGCACCATCTCTTC 911
*************** * * ** *** * **** ** * * * * *
consensus_2574#0 GGCATGGTATGCATTTTGATTGGGGTCTCGATGTTTGTTTCTTCAAGGTGGTGAGTGGAA 1019
consensus_2574#1 AATCGGCTATTCAATTTGCAGCTACCATTGCTTCCTGTTCTGGGTATCTGCCCTCTGTTC 971
* *** ** **** * * * **** * ** **
consensus_2574#0 TACAGAGGGGATTGTTTTTTTTTGGCTCTTCTTCCTCTGGCCATGTGGGGGTGCGCCATG 1079
consensus_2574#1 TTCTTACGAAAATCTGTGTG---------------------------------------- 991
* * * * * * * * *
consensus_2574#0 CCATCCCGCGTGATGAGAGAGGGGAAAAGGAGGTAGTGCCAAGTAGTTCAGAAAGGGGAC 1139
consensus_2574#1 ------------------------------------------------------------
consensus_2574#0 TCATTTTGGGGGAATGCTATTTTGGTTCACTGATTAAATTGGAGGTAGATTATCTATTTG 1199
consensus_2574#1 ------------------------------------------------------------
consensus_2574#0 GGCTGTACCACCTTCGCCTCTCTTGCTTAGGTTCTAGCAGTACATCGATTTTTCTTGTAT 1259
consensus_2574#1 ------------------------------------------------------------
consensus_2574#0 TCTTTCCCCAAAAGAAATACATTTAGGTGTAGGCAGAAAGTATTTAGTCCTATGTTTAAG 1319
consensus_2574#1 ------------------------------------------------------------
consensus_2574#0 GTTTGCCGCGGCAGCTGCGGCAGGTCTAAGGTCTCTCTGACTGATTGGTTTTGCTTCGCT 1379
consensus_2574#1 ------------------------------------------------------------
consensus_2574#0 CTCATGAAATTGTTTCAT 1397
consensus_2574#1 ------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||