These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2579#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 695 fasta sequence [TTTTTTTTTTGGCAACAGATCAATGAATAAACATTGCAATTTGCATAGTGTTCATCAAGTATATATCTACGTGGACTGGAAATAAATGATGTTCTAACCTAAATTAACTAGCTAAGCTCGCCAAAAAAAAAAACCTATGCCATGCCAATGGAGCAGAGGATGTTATTGTGGTAAGCTACTGTTATACACCTTTTTATCTAAAGCTTAATAAAGACAAACTCCTCAACTGATGGTATGTCGCCGATCAACTTGAGAGCTTCCTTCTCAGGCTCCTCATCAACCCCAATGGCCATTATCGCCTGCTTTCCAGGAGCAGTCCTTCCAACGCTCATGAAATTCACATTCACATTCATCTTCCCCAAAATTGATCCTACCTTTCCAATGATACCTGGCTGATCAACTTGACGGCAGAGTATTAGGTTGCCCTCAAGACTAACATCCACACTGAATGGCCCAACAAGTGTGAGATGTGGTTTCCCATCCTTCACCTCTCCCTCCACTCTGATGTCACCTTCGTCAGAGAGGGCACCGGCAAACTTGGACTCTACATTGGCGAGATGCACCTGGATAGAATCTATAGGGACCTCCGGTGATCCATCAAGGAGGATTCTCCCTTCGCTGATCCGAAGGCCTCTTTGCTTGGCCACATAGTCNGCATTGACAATGTTAACAAATGCACTTGACATGGCCTCGAT] [+] EMBL CA763041 [TTTTTTTTTTGGCAACAGATCAATGAATAAACATTGCAATTTGCATAGTGTTCATCAAGTATATATCTACGTGGACTGGAAATAAATGATGTTCTAACCTAAATTAACTAGCTAAGCTCGCCAAAAAAAAAAACCTATGCCATGCCAATGGAGCAGAGGATGTTATTGTGGTAAGCTACTGTTATACACCTTTTTATCTAAAGCTTAATAAAGACAAACTCCTCAACTGATGGTATGTCGCCGATCAACTTGAGAGCTTCCTTCTCAGGCTCCTCATCAACCCCAATGGCCATTATCGCCTGCTTTCCAGGAGCAGTCCTTCCAACGCTCATGAAATTCACATTCACATTCATCTTCCCCAAAATTGATCCTACCTTTCCAATGATACCTGGCTGATCAACTTGACGGCAGAGTATTAGGTTGCCCTCAAGACTAACATCCACACTGAATGGCCCAACAAGTGTGAGATGTGGTTTCCCATCCTTCACCTCTCCCTCCACTCTGATGTCACCTTCGTCAGAGAGGGCACCGGCAAACTTGGACTCTACATTGGCGAGATGCACCTGGATAGAATCTATAGGGACCTCCGGTGATCCATCAAGGAGGATTCTCCCTTCGCTGATCCGAAGGCCTCTTTGCTTGGCCACATAGTCNGCATTGACAATGTTAACAAATGCACTTGACATGGCCTCGAT] consensusID : consensus_2579#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 591 fasta sequence [TTTTTTTTGGAACAAACCAGCAGGGGCAACAGATCAATGAATAAACATTGCAATTTGCATAGTGTTCATCAAGTATATATCTACGTGGACTGAAAATAAATGATGTTCTAACCTAAATTAACTAGCTAAGCTTGCCAAAAAAAAAAACCTATGCCATGCCAATGGAGCAGAGGATGTTATTGTGGTAAGCTACTGTTATACACCTTATTATCTAAAGCTTAATAAAGACAAACTCCTCAACTGATGGTATGTCGCCGATCAACTTGAGAGCTTCCTTCTCAGGCTCCTCATCAACCCCAATGGCCATTATCGCCTGCTTTCCAGGAGCAGTCCTTCCAACGCTCATGAAATTCACATTCACATTCATCTTCCCCAAAATTGATCCTACCTTTCCAATGATACCTGGCTGATCAACTTGACGGCAGAGTATTAGGTTGCCCTCAAGACTAACATCCACACTGAATGGCCCAACAAGTGTGAGATGTGGTTTCCCATCCTTCACCTCTCCCTCCACTCTGATGTCACCTTCGTCAGAGAGGGCACCGGCGAACTTGGACTCTACATTGGCGAGATGCACCTGGATAGAATCTA] [+] EMBL CF308917 [TTTTTTTTGGAACAAACCAGCAGGGGCAACAGATCAATGAATAAACATTGCAATTTGCATAGTGTTCATCAAGTATATATCTACGTGGACTGAAAATAAATGATGTTCTAACCTAAATTAACTAGCTAAGCTTGCCAAAAAAAAAAACCTATGCCATGCCAATGGAGCAGAGGATGTTATTGTGGTAAGCTACTGTTATACACCTTATTATCTAAAGCTTAATAAAGACAAACTCCTCAACTGATGGTATGTCGCCGATCAACTTGAGAGCTTCCTTCTCAGGCTCCTCATCAACCCCAATGGCCATTATCGCCTGCTTTCCAGGAGCAGTCCTTCCAACGCTCATGAAATTCACATTCACATTCATCTTCCCCAAAATTGATCCTACCTTTCCAATGATACCTGGCTGATCAACTTGACGGCAGAGTATTAGGTTGCCCTCAAGACTAACATCCACACTGAATGGCCCAACAAGTGTGAGATGTGGTTTCCCATCCTTCACCTCTCCCTCCACTCTGATGTCACCTTCGTCAGAGAGGGCACCGGCGAACTTGGACTCTACATTGGCGAGATGCACCTGGATAGAATCTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2579#0 TTTTTTTTTT--------------GGCAACAGATCAATGAATAAACATTGCAATTTGCAT 46 consensus_2579#1 TTTTTTTTGGAACAAACCAGCAGGGGCAACAGATCAATGAATAAACATTGCAATTTGCAT 60 ******** ************************************ consensus_2579#0 AGTGTTCATCAAGTATATATCTACGTGGACTGGAAATAAATGATGTTCTAACCTAAATTA 106 consensus_2579#1 AGTGTTCATCAAGTATATATCTACGTGGACTGAAAATAAATGATGTTCTAACCTAAATTA 120 ******************************** *************************** consensus_2579#0 ACTAGCTAAGCTCGCCAAAAAAAAAAACCTATGCCATGCCAATGGAGCAGAGGATGTTAT 166 consensus_2579#1 ACTAGCTAAGCTTGCCAAAAAAAAAAACCTATGCCATGCCAATGGAGCAGAGGATGTTAT 180 ************ *********************************************** consensus_2579#0 TGTGGTAAGCTACTGTTATACACCTTTTTATCTAAAGCTTAATAAAGACAAACTCCTCAA 226 consensus_2579#1 TGTGGTAAGCTACTGTTATACACCTTATTATCTAAAGCTTAATAAAGACAAACTCCTCAA 240 ************************** ********************************* consensus_2579#0 CTGATGGTATGTCGCCGATCAACTTGAGAGCTTCCTTCTCAGGCTCCTCATCAACCCCAA 286 consensus_2579#1 CTGATGGTATGTCGCCGATCAACTTGAGAGCTTCCTTCTCAGGCTCCTCATCAACCCCAA 300 ************************************************************ consensus_2579#0 TGGCCATTATCGCCTGCTTTCCAGGAGCAGTCCTTCCAACGCTCATGAAATTCACATTCA 346 consensus_2579#1 TGGCCATTATCGCCTGCTTTCCAGGAGCAGTCCTTCCAACGCTCATGAAATTCACATTCA 360 ************************************************************ consensus_2579#0 CATTCATCTTCCCCAAAATTGATCCTACCTTTCCAATGATACCTGGCTGATCAACTTGAC 406 consensus_2579#1 CATTCATCTTCCCCAAAATTGATCCTACCTTTCCAATGATACCTGGCTGATCAACTTGAC 420 ************************************************************ consensus_2579#0 GGCAGAGTATTAGGTTGCCCTCAAGACTAACATCCACACTGAATGGCCCAACAAGTGTGA 466 consensus_2579#1 GGCAGAGTATTAGGTTGCCCTCAAGACTAACATCCACACTGAATGGCCCAACAAGTGTGA 480 ************************************************************ consensus_2579#0 GATGTGGTTTCCCATCCTTCACCTCTCCCTCCACTCTGATGTCACCTTCGTCAGAGAGGG 526 consensus_2579#1 GATGTGGTTTCCCATCCTTCACCTCTCCCTCCACTCTGATGTCACCTTCGTCAGAGAGGG 540 ************************************************************ consensus_2579#0 CACCGGCAAACTTGGACTCTACATTGGCGAGATGCACCTGGATAGAATCTATAGGGACCT 586 consensus_2579#1 CACCGGCGAACTTGGACTCTACATTGGCGAGATGCACCTGGATAGAATCTA--------- 591 ******* ******************************************* consensus_2579#0 CCGGTGATCCATCAAGGAGGATTCTCCCTTCGCTGATCCGAAGGCCTCTTTGCTTGGCCA 646 consensus_2579#1 ------------------------------------------------------------ consensus_2579#0 CATAGTCNGCATTGACAATGTTAACAAATGCACTTGACATGGCCTCGAT 695 consensus_2579#1 ------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||